data_XL7
# 
_chem_comp.id                                    XL7 
_chem_comp.name                                  "N-[3-chloro-2-({5-[(2,6-dichloro-3,5-dimethoxyphenyl)methoxy]pyrimidin-2-yl}amino)-5-fluorophenyl]propanamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H20 Cl3 F N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-11-05 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        529.776 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XL7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6BIP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XL7 C1  C1  C  0 1 Y N N N N N 3.920  -22.002 6.526  -6.286 -0.827 -0.039 C1  XL7 1  
XL7 C2  C2  C  0 1 Y N N N N N 4.603  -20.784 6.512  -4.995 -0.855 0.472  C2  XL7 2  
XL7 C3  C3  C  0 1 Y N N N N N 4.169  -19.688 7.260  -4.202 0.276  0.411  C3  XL7 3  
XL7 C4  C4  C  0 1 Y N N N N N 3.028  -19.855 8.032  -4.692 1.437  -0.158 C4  XL7 4  
XL7 C5  C5  C  0 1 Y N N N N N 2.317  -21.052 8.038  -5.982 1.469  -0.670 C5  XL7 5  
XL7 C6  C6  C  0 1 Y N N N N N 2.753  -22.116 7.260  -6.779 0.336  -0.610 C6  XL7 6  
XL7 O1  O1  O  0 1 N N N N N N 4.382  -23.024 5.748  -7.064 -1.940 0.017  O1  XL7 7  
XL7 O2  O2  O  0 1 N N N N N N 1.213  -21.097 8.843  -6.463 2.610  -1.230 O2  XL7 8  
XL7 C7  C7  C  0 1 N N N N N N 4.341  -24.358 6.257  -8.379 -1.841 -0.533 C7  XL7 9  
XL7 C8  C8  C  0 1 N N N N N N 0.414  -22.284 8.823  -7.799 2.571  -1.736 C8  XL7 10 
XL7 C9  C9  C  0 1 N N N N N N 4.957  -18.402 7.277  -2.801 0.243  0.967  C9  XL7 11 
XL7 O3  O3  O  0 1 N N N N N N 6.172  -18.635 8.019  -1.891 -0.160 -0.059 O3  XL7 12 
XL7 C10 C10 C  0 1 Y N N N N N 7.267  -17.819 7.822  -0.576 -0.241 0.279  C10 XL7 13 
XL7 C11 C11 C  0 1 Y N N N N N 7.190  -16.505 7.397  -0.154 0.052  1.571  C11 XL7 14 
XL7 N1  N1  N  0 1 Y N N N N N 8.289  -15.768 7.223  1.132  -0.038 1.865  N1  XL7 15 
XL7 C12 C12 C  0 1 Y N N N N N 9.471  -16.368 7.476  2.013  -0.402 0.945  C12 XL7 16 
XL7 N2  N2  N  0 1 Y N N N N N 9.626  -17.639 7.894  1.647  -0.688 -0.295 N2  XL7 17 
XL7 C13 C13 C  0 1 Y N N N N N 8.512  -18.357 8.062  0.377  -0.625 -0.658 C13 XL7 18 
XL7 CL1 CL1 CL 0 0 N N N N N N 6.019  -20.605 5.529  -4.377 -2.311 1.188  CL1 XL7 19 
XL7 CL2 CL2 CL 0 0 N N N N N N 2.471  -18.561 9.042  -3.694 2.855  -0.232 CL2 XL7 20 
XL7 N3  N3  N  0 1 N N N N N N 10.608 -15.655 7.258  3.354  -0.485 1.290  N3  XL7 21 
XL7 C14 C14 C  0 1 Y N N N N N 10.736 -14.323 6.780  4.312  -0.787 0.312  C14 XL7 22 
XL7 C15 C15 C  0 1 Y N N N N N 11.263 -13.351 7.640  5.233  0.181  -0.086 C15 XL7 23 
XL7 C16 C16 C  0 1 Y N N N N N 11.363 -12.025 7.185  6.179  -0.124 -1.054 C16 XL7 24 
XL7 C17 C17 C  0 1 Y N N N N N 10.971 -11.728 5.899  6.207  -1.386 -1.622 C17 XL7 25 
XL7 C18 C18 C  0 1 Y N N N N N 10.464 -12.675 5.035  5.292  -2.347 -1.226 C18 XL7 26 
XL7 C19 C19 C  0 1 Y N N N N N 10.350 -13.981 5.481  4.349  -2.052 -0.257 C19 XL7 27 
XL7 CL3 CL3 CL 0 0 N N N N N N 9.745  -15.193 4.390  3.204  -3.260 0.235  CL3 XL7 28 
XL7 F1  F1  F  0 1 N N N N N N 11.096 -10.440 5.468  7.129  -1.681 -2.564 F1  XL7 29 
XL7 N4  N4  N  0 1 N N N N N N 11.627 -13.739 8.947  5.203  1.458  0.489  N4  XL7 30 
XL7 C20 C20 C  0 1 N N N N N N 11.661 -12.979 10.061 6.290  2.252  0.423  C20 XL7 31 
XL7 C21 C21 C  0 1 N N N N N N 12.087 -13.693 11.288 6.221  3.667  0.938  C21 XL7 32 
XL7 O4  O4  O  0 1 N N N N N N 11.359 -11.781 10.060 7.323  1.829  -0.050 O4  XL7 33 
XL7 C22 C22 C  0 1 N N N N N N 11.632 -15.080 11.586 7.579  4.346  0.746  C22 XL7 34 
XL7 H1  H1  H  0 1 N N N N N N 2.182  -23.032 7.228  -7.782 0.359  -1.008 H1  XL7 35 
XL7 H2  H2  H  0 1 N N N N N N 4.749  -25.050 5.506  -8.936 -1.067 -0.005 H2  XL7 36 
XL7 H3  H3  H  0 1 N N N N N N 4.943  -24.418 7.176  -8.312 -1.582 -1.590 H3  XL7 37 
XL7 H4  H4  H  0 1 N N N N N N 3.300  -24.633 6.482  -8.891 -2.797 -0.425 H4  XL7 38 
XL7 H5  H5  H  0 1 N N N N N N -0.431 -22.169 9.517  -7.870 1.811  -2.514 H5  XL7 39 
XL7 H6  H6  H  0 1 N N N N N N 0.032  -22.452 7.805  -8.488 2.329  -0.927 H6  XL7 40 
XL7 H7  H7  H  0 1 N N N N N N 1.027  -23.144 9.131  -8.057 3.544  -2.154 H7  XL7 41 
XL7 H8  H8  H  0 1 N N N N N N 5.200  -18.099 6.248  -2.529 1.236  1.325  H8  XL7 42 
XL7 H9  H9  H  0 1 N N N N N N 4.369  -17.610 7.763  -2.754 -0.467 1.793  H9  XL7 43 
XL7 H10 H10 H  0 1 N N N N N N 6.222  -16.067 7.202  -0.868 0.350  2.325  H10 XL7 44 
XL7 H11 H11 H  0 1 N N N N N N 8.589  -19.382 8.393  0.084  -0.864 -1.669 H11 XL7 45 
XL7 H12 H12 H  0 1 N N N N N N 11.465 -16.129 7.460  3.629  -0.334 2.208  H12 XL7 46 
XL7 H13 H13 H  0 1 N N N N N N 11.742 -11.250 7.835  6.893  0.624  -1.365 H13 XL7 47 
XL7 H14 H14 H  0 1 N N N N N N 10.163 -12.405 4.034  5.320  -3.332 -1.668 H14 XL7 48 
XL7 H15 H15 H  0 1 N N N N N N 11.893 -14.696 9.062  4.400  1.770  0.934  H15 XL7 49 
XL7 H16 H16 H  0 1 N N N N N N 13.186 -13.728 11.260 5.458  4.218  0.387  H16 XL7 50 
XL7 H17 H17 H  0 1 N N N N N N 11.762 -13.072 12.136 5.966  3.656  1.997  H17 XL7 51 
XL7 H18 H18 H  0 1 N N N N N N 12.066 -15.412 12.541 8.341  3.795  1.297  H18 XL7 52 
XL7 H19 H19 H  0 1 N N N N N N 10.534 -15.098 11.657 7.833  4.357  -0.314 H19 XL7 53 
XL7 H20 H20 H  0 1 N N N N N N 11.959 -15.754 10.781 7.529  5.369  1.118  H20 XL7 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XL7 CL3 C19 SING N N 1  
XL7 C18 C19 DOUB Y N 2  
XL7 C18 C17 SING Y N 3  
XL7 F1  C17 SING N N 4  
XL7 C19 C14 SING Y N 5  
XL7 CL1 C2  SING N N 6  
XL7 O1  C7  SING N N 7  
XL7 O1  C1  SING N N 8  
XL7 C17 C16 DOUB Y N 9  
XL7 C2  C1  DOUB Y N 10 
XL7 C2  C3  SING Y N 11 
XL7 C1  C6  SING Y N 12 
XL7 C14 N3  SING N N 13 
XL7 C14 C15 DOUB Y N 14 
XL7 C16 C15 SING Y N 15 
XL7 N1  C11 DOUB Y N 16 
XL7 N1  C12 SING Y N 17 
XL7 N3  C12 SING N N 18 
XL7 C6  C5  DOUB Y N 19 
XL7 C3  C9  SING N N 20 
XL7 C3  C4  DOUB Y N 21 
XL7 C9  O3  SING N N 22 
XL7 C11 C10 SING Y N 23 
XL7 C12 N2  DOUB Y N 24 
XL7 C15 N4  SING N N 25 
XL7 C10 O3  SING N N 26 
XL7 C10 C13 DOUB Y N 27 
XL7 N2  C13 SING Y N 28 
XL7 C4  C5  SING Y N 29 
XL7 C4  CL2 SING N N 30 
XL7 C5  O2  SING N N 31 
XL7 C8  O2  SING N N 32 
XL7 N4  C20 SING N N 33 
XL7 O4  C20 DOUB N N 34 
XL7 C20 C21 SING N N 35 
XL7 C21 C22 SING N N 36 
XL7 C6  H1  SING N N 37 
XL7 C7  H2  SING N N 38 
XL7 C7  H3  SING N N 39 
XL7 C7  H4  SING N N 40 
XL7 C8  H5  SING N N 41 
XL7 C8  H6  SING N N 42 
XL7 C8  H7  SING N N 43 
XL7 C9  H8  SING N N 44 
XL7 C9  H9  SING N N 45 
XL7 C11 H10 SING N N 46 
XL7 C13 H11 SING N N 47 
XL7 N3  H12 SING N N 48 
XL7 C16 H13 SING N N 49 
XL7 C18 H14 SING N N 50 
XL7 N4  H15 SING N N 51 
XL7 C21 H16 SING N N 52 
XL7 C21 H17 SING N N 53 
XL7 C22 H18 SING N N 54 
XL7 C22 H19 SING N N 55 
XL7 C22 H20 SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XL7 SMILES           ACDLabs              12.01 "c1(cc(c(c(c1Cl)COc2cnc(nc2)Nc3c(NC(CC)=O)cc(cc3Cl)F)Cl)OC)OC"                                                                                                            
XL7 InChI            InChI                1.03  "InChI=1S/C22H20Cl3FN4O4/c1-4-18(31)29-15-6-11(26)5-14(23)21(15)30-22-27-8-12(9-28-22)34-10-13-19(24)16(32-2)7-17(33-3)20(13)25/h5-9H,4,10H2,1-3H3,(H,29,31)(H,27,28,30)" 
XL7 InChIKey         InChI                1.03  MGRZNNQBILIXES-UHFFFAOYSA-N                                                                                                                                               
XL7 SMILES_CANONICAL CACTVS               3.385 "CCC(=O)Nc1cc(F)cc(Cl)c1Nc2ncc(OCc3c(Cl)c(OC)cc(OC)c3Cl)cn2"                                                                                                              
XL7 SMILES           CACTVS               3.385 "CCC(=O)Nc1cc(F)cc(Cl)c1Nc2ncc(OCc3c(Cl)c(OC)cc(OC)c3Cl)cn2"                                                                                                              
XL7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC(=O)Nc1cc(cc(c1Nc2ncc(cn2)OCc3c(c(cc(c3Cl)OC)OC)Cl)Cl)F"                                                                                                              
XL7 SMILES           "OpenEye OEToolkits" 2.0.6 "CCC(=O)Nc1cc(cc(c1Nc2ncc(cn2)OCc3c(c(cc(c3Cl)OC)OC)Cl)Cl)F"                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XL7 "SYSTEMATIC NAME" ACDLabs              12.01 "N-[3-chloro-2-({5-[(2,6-dichloro-3,5-dimethoxyphenyl)methoxy]pyrimidin-2-yl}amino)-5-fluorophenyl]propanamide"                  
XL7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[2-[[5-[[2,6-bis(chloranyl)-3,5-dimethoxy-phenyl]methoxy]pyrimidin-2-yl]amino]-3-chloranyl-5-fluoranyl-phenyl]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XL7 "Create component" 2017-11-05 RCSB 
XL7 "Initial release"  2019-07-10 RCSB 
XL7 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            XL7 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C22 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
