data_VY7
#

_chem_comp.id                                   VY7
_chem_comp.name                                 "1-{2-[2-(2,4-diamino-5,7-dihydro-6H-pyrrolo[3,4-d]pyrimidin-6-yl)-2-oxoethoxy]phenyl}piperidine-4-carboxylic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H24 N6 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-21
_chem_comp.pdbx_modified_date                   2021-03-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       412.442
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VY7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7K69
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VY7  C11  C1   C  0  1  N  N  N  -2.035  -2.809  18.428   0.596   1.098   0.003  C11  VY7   1  
VY7  C13  C2   C  0  1  Y  N  N  -3.511  -3.890  19.910  -1.598   2.015  -0.004  C13  VY7   2  
VY7  C14  C3   C  0  1  Y  N  N  -2.666  -3.664  20.969  -1.013   3.271  -0.008  C14  VY7   3  
VY7  C15  C4   C  0  1  Y  N  N  -2.787  -4.420  22.120  -1.806   4.404  -0.016  C15  VY7   4  
VY7  C16  C5   C  0  1  Y  N  N  -3.763  -5.397  22.179  -3.184   4.287  -0.020  C16  VY7   5  
VY7  C17  C6   C  0  1  Y  N  N  -4.611  -5.614  21.107  -3.776   3.038  -0.017  C17  VY7   6  
VY7  C02  C7   C  0  1  Y  N  N  -1.188   0.830  13.277   7.267   0.163   0.024  C02  VY7   7  
VY7  C04  C8   C  0  1  Y  N  N  -1.590  -0.715  14.851   4.965   0.284   0.016  C04  VY7   8  
VY7  C05  C9   C  0  1  Y  N  N  -1.136  -1.725  14.060   4.901  -1.092   0.016  C05  VY7   9  
VY7  C06  C10  C  0  1  N  N  N  -1.230  -3.054  14.755   3.457  -1.517   0.012  C06  VY7  10  
VY7  C08  C11  C  0  1  N  N  N  -2.052  -1.226  16.183   3.563   0.836   0.012  C08  VY7  11  
VY7  C09  C12  C  0  1  N  N  N  -1.608  -3.483  17.144   1.290  -0.240   0.005  C09  VY7  12  
VY7  C18  C13  C  0  1  Y  N  N  -4.500  -4.863  19.939  -2.986   1.897  -0.009  C18  VY7  13  
VY7  C20  C14  C  0  1  N  N  N  -6.786  -5.010  19.033  -4.342   0.405  -1.242  C20  VY7  14  
VY7  C21  C15  C  0  1  N  N  N  -7.638  -4.772  17.781  -4.857  -1.036  -1.269  C21  VY7  15  
VY7  C22  C16  C  0  1  N  N  N  -7.129  -5.618  16.616  -5.749  -1.277  -0.049  C22  VY7  16  
VY7  C23  C17  C  0  1  N  N  N  -5.639  -5.369  16.347  -4.949  -0.987   1.224  C23  VY7  17  
VY7  C24  C18  C  0  1  N  N  N  -4.831  -5.705  17.609  -4.432   0.452   1.179  C24  VY7  18  
VY7  C25  C19  C  0  1  N  N  N  -8.037  -5.342  15.357  -6.213  -2.711  -0.038  C25  VY7  19  
VY7  C28  C20  C  0  1  Y  N  N  -0.671  -1.363  12.798   6.093  -1.820   0.009  C28  VY7  20  
VY7  N01  N1   N  0  1  N  N  N  -1.232   2.132  12.924   8.486   0.819   0.029  N01  VY7  21  
VY7  N03  N2   N  0  1  Y  N  N  -1.635   0.551  14.499   6.151   0.877   0.021  N03  VY7  22  
VY7  N07  N3   N  0  1  N  N  N  -1.630  -2.625  16.109   2.636  -0.301   0.009  N07  VY7  23  
VY7  N19  N4   N  0  1  N  N  N  -5.315  -5.002  18.815  -3.583   0.631  -0.006  N19  VY7  24  
VY7  N29  N5   N  0  1  N  N  N  -0.184  -2.282  11.921   6.072  -3.205  -0.004  N29  VY7  25  
VY7  N30  N6   N  0  1  Y  N  N  -0.703  -0.075  12.418   7.247  -1.161   0.019  N30  VY7  26  
VY7  O10  O1   O  0  1  N  N  N  -1.250  -4.642  17.034   0.637  -1.262   0.002  O10  VY7  27  
VY7  O12  O2   O  0  1  N  N  N  -3.377  -3.106  18.760  -0.819   0.900  -0.002  O12  VY7  28  
VY7  O26  O3   O  0  1  N  N  N  -7.673  -4.426  14.595  -5.865  -3.464  -0.917  O26  VY7  29  
VY7  O27  O4   O  0  1  N  N  N  -9.043  -6.083  15.279  -7.011  -3.151   0.947  O27  VY7  30  
VY7  H1   H1   H  0  1  N  N  N  -1.383  -3.153  19.244   0.882   1.657   0.894  H1   VY7  31  
VY7  H2   H2   H  0  1  N  N  N  -1.931  -1.720  18.310   0.888   1.657  -0.886  H2   VY7  32  
VY7  H3   H3   H  0  1  N  N  N  -1.908  -2.897  20.903   0.063   3.365  -0.004  H3   VY7  33  
VY7  H4   H4   H  0  1  N  N  N  -2.129  -4.250  22.960  -1.348   5.382  -0.018  H4   VY7  34  
VY7  H5   H5   H  0  1  N  N  N  -3.865  -5.997  23.071  -3.799   5.175  -0.026  H5   VY7  35  
VY7  H6   H6   H  0  1  N  N  N  -5.371  -6.378  21.177  -4.852   2.950  -0.020  H6   VY7  36  
VY7  H7   H7   H  0  1  N  N  N  -1.991  -3.700  14.293   3.248  -2.106  -0.881  H7   VY7  37  
VY7  H8   H8   H  0  1  N  N  N  -0.262  -3.576  14.764   3.242  -2.106   0.903  H8   VY7  38  
VY7  H9   H9   H  0  1  N  N  N  -1.557  -0.698  17.012   3.402   1.442   0.904  H9   VY7  39  
VY7  H10  H10  H  0  1  N  N  N  -3.143  -1.139  16.292   3.408   1.443  -0.880  H10  VY7  40  
VY7  H11  H11  H  0  1  N  N  N  -7.025  -4.221  19.761  -3.695   0.575  -2.102  H11  VY7  41  
VY7  H12  H12  H  0  1  N  N  N  -7.062  -5.990  19.450  -5.187   1.093  -1.281  H12  VY7  42  
VY7  H13  H13  H  0  1  N  N  N  -7.586  -3.708  17.505  -5.434  -1.199  -2.180  H13  VY7  43  
VY7  H14  H14  H  0  1  N  N  N  -8.682  -5.044  17.997  -4.013  -1.725  -1.245  H14  VY7  44  
VY7  H15  H15  H  0  1  N  N  N  -7.252  -6.677  16.885  -6.615  -0.615  -0.094  H15  VY7  45  
VY7  H16  H16  H  0  1  N  N  N  -5.304  -6.007  15.516  -5.592  -1.116   2.095  H16  VY7  46  
VY7  H17  H17  H  0  1  N  N  N  -5.485  -4.312  16.083  -4.106  -1.675   1.288  H17  VY7  47  
VY7  H18  H18  H  0  1  N  N  N  -4.895  -6.789  17.787  -5.275   1.140   1.129  H18  VY7  48  
VY7  H19  H19  H  0  1  N  N  N  -3.782  -5.423  17.438  -3.849   0.657   2.077  H19  VY7  49  
VY7  H20  H20  H  0  1  N  N  N  -0.867   2.240  11.999   8.515   1.788   0.029  H20  VY7  50  
VY7  H21  H21  H  0  1  N  N  N  -2.179   2.452  12.948   9.311   0.309   0.031  H21  VY7  51  
VY7  H22  H22  H  0  1  N  N  N   0.092  -1.824  11.076   5.225  -3.678  -0.009  H22  VY7  52  
VY7  H23  H23  H  0  1  N  N  N   0.608  -2.741  12.325   6.905  -3.703  -0.009  H23  VY7  53  
VY7  H24  H24  H  0  1  N  N  N  -9.547  -5.853  14.507  -7.282  -4.079   0.910  H24  VY7  54  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VY7  N29  C28  SING  N  N   1  
VY7  N30  C28  DOUB  Y  N   2  
VY7  N30  C02  SING  Y  N   3  
VY7  C28  C05  SING  Y  N   4  
VY7  N01  C02  SING  N  N   5  
VY7  C02  N03  DOUB  Y  N   6  
VY7  C05  C06  SING  N  N   7  
VY7  C05  C04  DOUB  Y  N   8  
VY7  N03  C04  SING  Y  N   9  
VY7  O26  C25  DOUB  N  N  10  
VY7  C06  N07  SING  N  N  11  
VY7  C04  C08  SING  N  N  12  
VY7  O27  C25  SING  N  N  13  
VY7  C25  C22  SING  N  N  14  
VY7  N07  C08  SING  N  N  15  
VY7  N07  C09  SING  N  N  16  
VY7  C23  C22  SING  N  N  17  
VY7  C23  C24  SING  N  N  18  
VY7  C22  C21  SING  N  N  19  
VY7  O10  C09  DOUB  N  N  20  
VY7  C09  C11  SING  N  N  21  
VY7  C24  N19  SING  N  N  22  
VY7  C21  C20  SING  N  N  23  
VY7  C11  O12  SING  N  N  24  
VY7  O12  C13  SING  N  N  25  
VY7  N19  C20  SING  N  N  26  
VY7  N19  C18  SING  N  N  27  
VY7  C13  C18  DOUB  Y  N  28  
VY7  C13  C14  SING  Y  N  29  
VY7  C18  C17  SING  Y  N  30  
VY7  C14  C15  DOUB  Y  N  31  
VY7  C17  C16  DOUB  Y  N  32  
VY7  C15  C16  SING  Y  N  33  
VY7  C11  H1   SING  N  N  34  
VY7  C11  H2   SING  N  N  35  
VY7  C14  H3   SING  N  N  36  
VY7  C15  H4   SING  N  N  37  
VY7  C16  H5   SING  N  N  38  
VY7  C17  H6   SING  N  N  39  
VY7  C06  H7   SING  N  N  40  
VY7  C06  H8   SING  N  N  41  
VY7  C08  H9   SING  N  N  42  
VY7  C08  H10  SING  N  N  43  
VY7  C20  H11  SING  N  N  44  
VY7  C20  H12  SING  N  N  45  
VY7  C21  H13  SING  N  N  46  
VY7  C21  H14  SING  N  N  47  
VY7  C22  H15  SING  N  N  48  
VY7  C23  H16  SING  N  N  49  
VY7  C23  H17  SING  N  N  50  
VY7  C24  H18  SING  N  N  51  
VY7  C24  H19  SING  N  N  52  
VY7  N01  H20  SING  N  N  53  
VY7  N01  H21  SING  N  N  54  
VY7  N29  H22  SING  N  N  55  
VY7  N29  H23  SING  N  N  56  
VY7  O27  H24  SING  N  N  57  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VY7  SMILES            ACDLabs               12.01  "C(Oc1c(cccc1)N2CCC(CC2)C(=O)O)C(N3Cc4c(C3)nc(N)nc4N)=O"  
VY7  InChI             InChI                 1.03   "InChI=1S/C20H24N6O4/c21-18-13-9-26(10-14(13)23-20(22)24-18)17(27)11-30-16-4-2-1-3-15(16)25-7-5-12(6-8-25)19(28)29/h1-4,12H,5-11H2,(H,28,29)(H4,21,22,23,24)"  
VY7  InChIKey          InChI                 1.03   GJSALIBRKRZNLE-UHFFFAOYSA-N  
VY7  SMILES_CANONICAL  CACTVS                3.385  "Nc1nc(N)c2CN(Cc2n1)C(=O)COc3ccccc3N4CCC(CC4)C(O)=O"  
VY7  SMILES            CACTVS                3.385  "Nc1nc(N)c2CN(Cc2n1)C(=O)COc3ccccc3N4CCC(CC4)C(O)=O"  
VY7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(c(c1)N2CCC(CC2)C(=O)O)OCC(=O)N3Cc4c(nc(nc4N)N)C3"  
VY7  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(c(c1)N2CCC(CC2)C(=O)O)OCC(=O)N3Cc4c(nc(nc4N)N)C3"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VY7  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-{2-[2-(2,4-diamino-5,7-dihydro-6H-pyrrolo[3,4-d]pyrimidin-6-yl)-2-oxoethoxy]phenyl}piperidine-4-carboxylic acid"  
VY7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "1-[2-[2-[2,4-bis(azanyl)-5,7-dihydropyrrolo[3,4-d]pyrimidin-6-yl]-2-oxidanylidene-ethoxy]phenyl]piperidine-4-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VY7  "Create component"  2020-09-21  RCSB  
VY7  "Initial release"   2021-03-17  RCSB  
##
