data_UY7
# 
_chem_comp.id                                    UY7 
_chem_comp.name                                  "(4S)-4-hydroxy-D-proline" 
_chem_comp.type                                  "D-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C5 H9 N O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-06-04 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        131.130 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UY7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6X9A 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UY7 CB  C1  C 0 1 N N N N N N -20.746 73.819 103.141 -0.505 -0.790 0.670  C01 UY7 1  
UY7 CG  C2  C 0 1 N N S N N N -20.923 74.518 104.485 -1.907 -0.156 0.521  C02 UY7 2  
UY7 CD  C3  C 0 1 N N N N N N -22.296 75.205 104.377 -1.663 1.200  -0.169 C03 UY7 3  
UY7 CA  C4  C 0 1 N N R Y N N -22.160 73.601 102.581 0.324  -0.057 -0.414 C05 UY7 4  
UY7 C   C5  C 0 1 N N N Y N Y -22.256 74.160 101.119 1.791  -0.081 -0.068 C06 UY7 5  
UY7 N   N1  N 0 1 N N N Y Y N -23.107 74.270 103.545 -0.203 1.330  -0.366 N04 UY7 6  
UY7 OXT O1  O 0 1 N Y N Y N Y -22.914 75.218 100.951 2.522  -1.178 -0.319 O07 UY7 7  
UY7 O   O2  O 0 1 N N N Y N Y -21.662 73.520 100.230 2.309  0.888  0.435  O08 UY7 8  
UY7 O09 O3  O 0 1 N N N N N N -20.997 73.540 105.489 -2.741 -0.983 -0.292 O09 UY7 9  
UY7 HB2 H1  H 0 1 N N N N N N -20.237 72.853 103.278 -0.098 -0.597 1.663  H1  UY7 10 
UY7 HB3 H2  H 0 1 N N N N N N -20.158 74.450 102.458 -0.543 -1.861 0.472  H2  UY7 11 
UY7 HG2 H3  H 0 1 N N N N N N -20.126 75.256 104.658 -2.361 -0.007 1.500  H3  UY7 12 
UY7 HD2 H4  H 0 1 N N N N N N -22.205 76.185 103.886 -2.172 1.222  -1.133 H4  UY7 13 
UY7 HD3 H5  H 0 1 N N N N N N -22.747 75.334 105.372 -2.030 2.009  0.463  H5  UY7 14 
UY7 HA  H6  H 0 1 N N N Y N N -22.370 72.522 102.556 0.152  -0.500 -1.395 H6  UY7 15 
UY7 H   H7  H 0 1 N Y N Y Y N -23.807 74.777 103.042 0.218  1.851  0.389  H7  UY7 16 
UY7 HXT H9  H 0 1 N Y N Y N Y -22.892 75.463 100.033 3.459  -1.146 -0.080 H9  UY7 17 
UY7 H10 H10 H 0 1 N N N N N N -21.108 73.960 106.334 -3.634 -0.635 -0.421 H10 UY7 18 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UY7 O   C   DOUB N N 1  
UY7 OXT C   SING N N 2  
UY7 C   CA  SING N N 3  
UY7 CA  CB  SING N N 4  
UY7 CA  N   SING N N 5  
UY7 CB  CG  SING N N 6  
UY7 N   CD  SING N N 7  
UY7 CD  CG  SING N N 8  
UY7 CG  O09 SING N N 9  
UY7 CB  HB2 SING N N 10 
UY7 CB  HB3 SING N N 11 
UY7 CG  HG2 SING N N 12 
UY7 CD  HD2 SING N N 13 
UY7 CD  HD3 SING N N 14 
UY7 CA  HA  SING N N 15 
UY7 N   H   SING N N 16 
UY7 OXT HXT SING N N 17 
UY7 O09 H10 SING N N 18 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UY7 SMILES           ACDLabs              12.01 "C1C(O)CNC1C(O)=O"                                                           
UY7 InChI            InChI                1.03  "InChI=1S/C5H9NO3/c7-3-1-4(5(8)9)6-2-3/h3-4,6-7H,1-2H2,(H,8,9)/t3-,4+/m0/s1" 
UY7 InChIKey         InChI                1.03  PMMYEEVYMWASQN-IUYQGCFVSA-N                                                  
UY7 SMILES_CANONICAL CACTVS               3.385 "O[C@@H]1CN[C@H](C1)C(O)=O"                                                  
UY7 SMILES           CACTVS               3.385 "O[CH]1CN[CH](C1)C(O)=O"                                                     
UY7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H](CN[C@H]1C(=O)O)O"                                                  
UY7 SMILES           "OpenEye OEToolkits" 2.0.7 "C1C(CNC1C(=O)O)O"                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
UY7 "SYSTEMATIC NAME" ACDLabs              12.01 "(4S)-4-hydroxy-D-proline"                              
UY7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},4~{S})-4-oxidanylpyrrolidine-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UY7 "Create component" 2020-06-04 RCSB 
UY7 "Initial release"  2020-12-30 RCSB 
UY7 "Modify backbone"  2024-09-25 PDBE 
UY7 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            UY7 
_pdbx_chem_comp_pcm.modified_residue_id                DPR 
_pdbx_chem_comp_pcm.type                               Hydroxylation 
_pdbx_chem_comp_pcm.category                           "Named protein modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
