data_U87
#

_chem_comp.id                                   U87
_chem_comp.name                                 "5'-([(3S)-3-amino-3-carboxypropyl]{3-[(4R)-7,8-dichloro-1,2,3,4-tetrahydroisoquinolin-4-yl]propyl}amino)-5'-deoxyadenosine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H34 Cl2 N8 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-05-01
_chem_comp.pdbx_modified_date                   2020-07-31
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       609.505
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    U87
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6WS1
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
U87  C      C1   C   0  1  N  N  N   -5.941  -18.485  -73.370   2.738  -5.723   1.006  C      U87   1  
U87  N      N1   N   0  1  N  N  N   -4.090  -18.349  -74.915   0.382  -5.251   1.366  N      U87   2  
U87  O      O1   O   0  1  N  N  N   -6.992  -18.037  -72.838   3.762  -6.091   0.221  O      U87   3  
U87  N1     N2   N   0  1  Y  N  N   -1.001  -15.593  -85.024   7.093   4.248   1.596  N1     U87   4  
U87  O1     O2   O   0  1  N  N  N   -5.505  -19.653  -73.201   2.829  -5.829   2.207  O1     U87   5  
U87  C2     C2   C   0  1  Y  N  N   -0.699  -15.789  -83.729   6.174   4.618   0.723  C2     U87   6  
U87  C4     C3   C   0  1  Y  N  N   -2.710  -14.887  -83.033   5.444   2.460   0.417  C4     U87   7  
U87  C5     C4   C   0  1  Y  N  N   -3.060  -14.666  -84.357   6.406   2.015   1.339  C5     U87   8  
U87  C6     C5   C   0  1  Y  N  N   -2.185  -15.033  -85.373   7.247   2.972   1.934  C6     U87   9  
U87  C8     C6   C   0  1  Y  N  N   -4.662  -13.983  -83.087   5.318   0.271   0.650  C8     U87  10  
U87  C11    C7   C   0  1  N  N  N   -8.155  -16.105  -77.293  -0.648  -1.145  -1.399  C11    U87  11  
U87  C12    C8   C   0  1  N  N  N   -8.914  -17.144  -78.105  -1.598  -1.185  -0.200  C12    U87  12  
U87  C13    C9   C   0  1  N  N  N   -9.646  -18.146  -77.233  -2.934  -0.547  -0.585  C13    U87  13  
U87  CA     C10  C   0  1  N  N  S   -5.144  -17.562  -74.245   1.478  -5.171   0.392  CA     U87  14  
U87  CB     C11  C   0  1  N  N  N   -6.069  -16.844  -75.233   1.701  -3.710  -0.005  CB     U87  15  
U87  CG     C12  C   0  1  N  N  N   -6.150  -17.373  -76.672   0.474  -3.193  -0.757  CG     U87  16  
U87  ND     N3   N   0  1  N  N  N   -6.693  -16.244  -77.481   0.634  -1.758  -1.028  ND     U87  17  
U87  "C1'"  C13  C   0  1  N  N  R   -3.779  -14.490  -80.792   3.674   1.296  -0.968  "C1'"  U87  18  
U87  C14    C14  C   0  1  N  N  R  -11.153  -17.924  -77.195  -3.883  -0.586   0.614  C14    U87  19  
U87  C15    C15  C   0  1  N  N  N  -11.826  -18.319  -78.507  -3.317   0.281   1.738  C15    U87  20  
U87  C16    C16  C   0  1  N  N  N  -13.189  -20.107  -77.630  -5.433   1.278   2.320  C16    U87  21  
U87  C17    C17  C   0  1  Y  N  N  -12.210  -20.125  -76.456  -5.957   0.794   0.993  C17    U87  22  
U87  C18    C18  C   0  1  Y  N  N  -11.756  -18.726  -76.054  -5.237  -0.070   0.198  C18    U87  23  
U87  C19    C19  C   0  1  Y  N  N  -10.751  -18.900  -74.943  -5.757  -0.486  -1.019  C19    U87  24  
U87  "C2'"  C20  C   0  1  N  N  R   -4.778  -13.443  -80.350   4.225   1.115  -2.400  "C2'"  U87  25  
U87  C20    C21  C   0  1  Y  N  N  -11.131  -19.611  -73.886  -6.995  -0.041  -1.437  C20    U87  26  
U87  C21    C22  C   0  1  Y  N  N  -12.158  -20.661  -74.064  -7.721   0.825  -0.639  C21    U87  27  
U87  C22    C23  C   0  1  Y  N  N  -12.858  -20.690  -75.223  -7.202   1.241   0.573  C22    U87  28  
U87  "C3'"  C24  C   0  1  N  N  S   -5.302  -13.970  -79.030   3.197   0.186  -3.083  "C3'"  U87  29  
U87  "C4'"  C25  C   0  1  N  N  R   -5.046  -15.468  -79.108   2.146  -0.085  -1.983  "C4'"  U87  30  
U87  "C5'"  C26  C   0  1  N  N  N   -6.315  -16.303  -78.910   1.647  -1.528  -2.068  "C5'"  U87  31  
U87  N10    N4   N   0  1  N  N  N  -13.207  -18.756  -78.213  -4.342   0.415   2.786  N10    U87  32  
U87  N3     N5   N   0  1  Y  N  N   -1.530  -15.450  -82.738   5.365   3.758   0.141  N3     U87  33  
U87  N6     N6   N   0  1  N  N  N   -2.502  -14.835  -86.680   8.213   2.593   2.850  N6     U87  34  
U87  N7     N7   N   0  1  Y  N  N   -4.273  -14.107  -84.369   6.275   0.670   1.436  N7     U87  35  
U87  N9     N8   N   0  1  Y  N  N   -3.706  -14.459  -82.272   4.774   1.338  -0.001  N9     U87  36  
U87  "O2'"  O3   O   0  1  N  N  N   -4.172  -12.155  -80.224   4.288   2.373  -3.075  "O2'"  U87  37  
U87  "O3'"  O4   O   0  1  N  N  N   -4.568  -13.384  -77.939   2.594   0.842  -4.201  "O3'"  U87  38  
U87  O4     O5   O   0  1  N  N  N   -4.393  -15.701  -80.369   2.850   0.132  -0.740  O4     U87  39  
U87  CL1    CL1  CL  0  0  N  N  N  -12.395  -21.763  -72.694  -9.279   1.387  -1.158  CL1    U87  40  
U87  CL2    CL2  CL  0  0  N  N  N  -14.532  -21.260  -75.369  -8.113   2.328   1.575  CL2    U87  41  
U87  H1     H1   H   0  1  N  N  N   -3.518  -18.795  -74.227   0.171  -6.211   1.596  H1     U87  42  
U87  H2     H2   H   0  1  N  N  N   -4.512  -19.043  -75.498   0.596  -4.719   2.197  H2     U87  43  
U87  H4     H4   H   0  1  N  N  N   -7.389  -18.713  -72.302   4.578  -6.365   0.663  H4     U87  44  
U87  H5     H5   H   0  1  N  N  N    0.251  -16.237  -83.479   6.083   5.666   0.477  H5     U87  45  
U87  H6     H6   H   0  1  N  N  N   -5.602  -13.563  -82.762   5.002  -0.754   0.530  H6     U87  46  
U87  H7     H7   H   0  1  N  N  N   -8.465  -15.100  -77.616  -1.089  -1.697  -2.229  H7     U87  47  
U87  H8     H8   H   0  1  N  N  N   -8.394  -16.237  -76.227  -0.484  -0.110  -1.697  H8     U87  48  
U87  H9     H9   H   0  1  N  N  N   -9.649  -16.627  -78.740  -1.763  -2.220   0.099  H9     U87  49  
U87  H10    H10  H   0  1  N  N  N   -8.198  -17.687  -78.740  -1.158  -0.633   0.631  H10    U87  50  
U87  H11    H11  H   0  1  N  N  N   -9.452  -19.156  -77.623  -2.769   0.489  -0.884  H11    U87  51  
U87  H12    H12  H   0  1  N  N  N   -9.256  -18.067  -76.208  -3.374  -1.099  -1.416  H12    U87  52  
U87  H13    H13  H   0  1  N  N  N   -4.668  -16.802  -73.608   1.220  -5.753  -0.493  H13    U87  53  
U87  H14    H14  H   0  1  N  N  N   -5.735  -15.797  -75.289   1.858  -3.110   0.891  H14    U87  54  
U87  H15    H15  H   0  1  N  N  N   -7.085  -16.883  -74.814   2.578  -3.639  -0.649  H15    U87  55  
U87  H16    H16  H   0  1  N  N  N   -6.822  -18.242  -76.725   0.371  -3.731  -1.700  H16    U87  56  
U87  H17    H17  H   0  1  N  N  N   -5.151  -17.659  -77.033  -0.418  -3.350  -0.150  H17    U87  57  
U87  H19    H19  H   0  1  N  N  N   -2.794  -14.326  -80.330   3.076   2.204  -0.904  H19    U87  58  
U87  H20    H20  H   0  1  N  N  N  -11.344  -16.856  -77.012  -3.980  -1.614   0.965  H20    U87  59  
U87  H21    H21  H   0  1  N  N  N  -11.268  -19.143  -78.977  -2.428  -0.194   2.155  H21    U87  60  
U87  H22    H22  H   0  1  N  N  N  -11.847  -17.455  -79.188  -3.061   1.265   1.348  H22    U87  61  
U87  H23    H23  H   0  1  N  N  N  -14.196  -20.370  -77.275  -5.064   2.298   2.212  H23    U87  62  
U87  H24    H24  H   0  1  N  N  N  -12.867  -20.833  -78.391  -6.239   1.262   3.053  H24    U87  63  
U87  H27    H27  H   0  1  N  N  N   -9.764  -18.465  -75.004  -5.191  -1.162  -1.642  H27    U87  64  
U87  H29    H29  H   0  1  N  N  N   -5.604  -13.406  -81.075   5.209   0.646  -2.375  H29    U87  65  
U87  H30    H30  H   0  1  N  N  N  -10.698  -19.425  -72.914  -7.396  -0.368  -2.385  H30    U87  66  
U87  H32    H32  H   0  1  N  N  N   -6.380  -13.773  -78.941   3.671  -0.743  -3.398  H32    U87  67  
U87  H33    H33  H   0  1  N  N  N   -4.349  -15.729  -78.298   1.312   0.611  -2.076  H33    U87  68  
U87  H34    H34  H   0  1  N  N  N   -7.129  -15.894  -79.527   2.483  -2.211  -1.917  H34    U87  69  
U87  H35    H35  H   0  1  N  N  N   -6.123  -17.346  -79.201   1.206  -1.704  -3.049  H35    U87  70  
U87  H36    H36  H   0  1  N  N  N  -13.625  -18.120  -77.564  -4.691  -0.488   3.069  H36    U87  71  
U87  H38    H38  H   0  1  N  N  N   -1.752  -15.158  -87.258   8.788   3.263   3.253  H38    U87  72  
U87  H39    H39  H   0  1  N  N  N   -3.335  -15.342  -86.901   8.316   1.659   3.088  H39    U87  73  
U87  H40    H40  H   0  1  N  N  N   -4.825  -11.523  -79.946   4.627   2.318  -3.979  H40    U87  74  
U87  H41    H41  H   0  1  N  N  N   -4.902  -13.719  -77.115   3.219   1.090  -4.896  H41    U87  75  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
U87  N6     C6     SING  N  N   1  
U87  C6     N1     DOUB  Y  N   2  
U87  C6     C5     SING  Y  N   3  
U87  N1     C2     SING  Y  N   4  
U87  N7     C5     SING  Y  N   5  
U87  N7     C8     DOUB  Y  N   6  
U87  C5     C4     DOUB  Y  N   7  
U87  C2     N3     DOUB  Y  N   8  
U87  C8     N9     SING  Y  N   9  
U87  C4     N3     SING  Y  N  10  
U87  C4     N9     SING  Y  N  11  
U87  N9     "C1'"  SING  N  N  12  
U87  "C1'"  O4     SING  N  N  13  
U87  "C1'"  "C2'"  SING  N  N  14  
U87  O4     "C4'"  SING  N  N  15  
U87  "C2'"  "O2'"  SING  N  N  16  
U87  "C2'"  "C3'"  SING  N  N  17  
U87  "C4'"  "C3'"  SING  N  N  18  
U87  "C4'"  "C5'"  SING  N  N  19  
U87  "C3'"  "O3'"  SING  N  N  20  
U87  "C5'"  ND     SING  N  N  21  
U87  C15    N10    SING  N  N  22  
U87  C15    C14    SING  N  N  23  
U87  N10    C16    SING  N  N  24  
U87  C12    C11    SING  N  N  25  
U87  C12    C13    SING  N  N  26  
U87  C16    C17    SING  N  N  27  
U87  ND     C11    SING  N  N  28  
U87  ND     CG     SING  N  N  29  
U87  C13    C14    SING  N  N  30  
U87  C14    C18    SING  N  N  31  
U87  CG     CB     SING  N  N  32  
U87  C17    C18    DOUB  Y  N  33  
U87  C17    C22    SING  Y  N  34  
U87  C18    C19    SING  Y  N  35  
U87  CL2    C22    SING  N  N  36  
U87  CB     CA     SING  N  N  37  
U87  C22    C21    DOUB  Y  N  38  
U87  C19    C20    DOUB  Y  N  39  
U87  N      CA     SING  N  N  40  
U87  CA     C      SING  N  N  41  
U87  C21    C20    SING  Y  N  42  
U87  C21    CL1    SING  N  N  43  
U87  C      O1     DOUB  N  N  44  
U87  C      O      SING  N  N  45  
U87  N      H1     SING  N  N  46  
U87  N      H2     SING  N  N  47  
U87  O      H4     SING  N  N  48  
U87  C2     H5     SING  N  N  49  
U87  C8     H6     SING  N  N  50  
U87  C11    H7     SING  N  N  51  
U87  C11    H8     SING  N  N  52  
U87  C12    H9     SING  N  N  53  
U87  C12    H10    SING  N  N  54  
U87  C13    H11    SING  N  N  55  
U87  C13    H12    SING  N  N  56  
U87  CA     H13    SING  N  N  57  
U87  CB     H14    SING  N  N  58  
U87  CB     H15    SING  N  N  59  
U87  CG     H16    SING  N  N  60  
U87  CG     H17    SING  N  N  61  
U87  "C1'"  H19    SING  N  N  62  
U87  C14    H20    SING  N  N  63  
U87  C15    H21    SING  N  N  64  
U87  C15    H22    SING  N  N  65  
U87  C16    H23    SING  N  N  66  
U87  C16    H24    SING  N  N  67  
U87  C19    H27    SING  N  N  68  
U87  "C2'"  H29    SING  N  N  69  
U87  C20    H30    SING  N  N  70  
U87  "C3'"  H32    SING  N  N  71  
U87  "C4'"  H33    SING  N  N  72  
U87  "C5'"  H34    SING  N  N  73  
U87  "C5'"  H35    SING  N  N  74  
U87  N10    H36    SING  N  N  75  
U87  N6     H38    SING  N  N  76  
U87  N6     H39    SING  N  N  77  
U87  "O2'"  H40    SING  N  N  78  
U87  "O3'"  H41    SING  N  N  79  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
U87  SMILES            ACDLabs               12.01  "C(=O)(O)C(N)CCN(CCCC1c2c(CNC1)c(c(cc2)Cl)Cl)CC3C(C(C(O3)n5c4ncnc(c4nc5)N)O)O"  
U87  InChI             InChI                 1.03   "InChI=1S/C26H34Cl2N8O5/c27-16-4-3-14-13(8-31-9-15(14)19(16)28)2-1-6-35(7-5-17(29)26(39)40)10-18-21(37)22(38)25(41-18)36-12-34-20-23(30)32-11-33-24(20)36/h3-4,11-13,17-18,21-22,25,31,37-38H,1-2,5-10,29H2,(H,39,40)(H2,30,32,33)/t13-,17-,18+,21+,22+,25+/m0/s1"  
U87  InChIKey          InChI                 1.03   LJUSEDZPCVZRMF-RYHYOYCJSA-N  
U87  SMILES_CANONICAL  CACTVS                3.385  "N[C@@H](CCN(CCC[C@H]1CNCc2c(Cl)c(Cl)ccc12)C[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)C(O)=O"  
U87  SMILES            CACTVS                3.385  "N[CH](CCN(CCC[CH]1CNCc2c(Cl)c(Cl)ccc12)C[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)C(O)=O"  
U87  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(c(c2c1[C@H](CNC2)CCCN(CC[C@@H](C(=O)O)N)C[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)Cl)Cl"  
U87  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(c(c2c1C(CNC2)CCCN(CCC(C(=O)O)N)CC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)Cl)Cl"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
U87  "SYSTEMATIC NAME"  ACDLabs               12.01  "5'-([(3S)-3-amino-3-carboxypropyl]{3-[(4R)-7,8-dichloro-1,2,3,4-tetrahydroisoquinolin-4-yl]propyl}amino)-5'-deoxyadenosine"  
U87  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[(4~{R})-7,8-bis(chloranyl)-1,2,3,4-tetrahydroisoquinolin-4-yl]propyl]amino]-2-azanyl-butanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
U87  "Create component"  2020-05-01  RCSB  
U87  "Initial release"   2020-08-05  RCSB  
##
