data_TD7
# 
_chem_comp.id                                    TD7 
_chem_comp.name                                  "(4E)-4-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-2(3H)-ylidene}-4-hydroxybutanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H24 N4 O10 P2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-10-05 
_chem_comp.pdbx_modified_date                    2011-06-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        526.395 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     TD7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2XT7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
TD7 O1B    O1B    O 0 1 N N N 19.472 10.056 -67.049 8.166  0.831  0.869  O1B    TD7 1  
TD7 PB     PB     P 0 1 N N N 20.062 10.848 -65.786 7.436  0.197  -0.419 PB     TD7 2  
TD7 O3B    O3B    O 0 1 N N N 21.539 10.759 -65.829 8.125  0.764  -1.759 O3B    TD7 3  
TD7 O2B    O2B    O 0 1 N N N 19.519 10.245 -64.396 7.567  -1.277 -0.384 O2B    TD7 4  
TD7 O3A    O3A    O 0 1 N N N 19.610 12.283 -65.875 5.877  0.598  -0.405 O3A    TD7 5  
TD7 PA     PA     P 0 1 N N N 20.326 13.613 -66.388 4.603  0.105  0.447  PA     TD7 6  
TD7 O1A    O1A    O 0 1 N N N 19.500 14.771 -65.967 4.667  -1.363 0.625  O1A    TD7 7  
TD7 O2A    O2A    O 0 1 N N N 21.816 13.709 -65.793 4.612  0.822  1.889  O2A    TD7 8  
TD7 O7     O7     O 0 1 N N N 20.489 13.572 -67.998 3.251  0.493  -0.336 O7     TD7 9  
TD7 C7     C7     C 0 1 N N N 19.370 13.423 -68.860 1.952  0.098  0.111  C7     TD7 10 
TD7 C6     C6     C 0 1 N N N 19.746 13.104 -70.320 0.896  0.630  -0.860 C6     TD7 11 
TD7 C5     C5     C 0 1 N N N 18.422 12.970 -71.031 -0.474 0.215  -0.389 C5     TD7 12 
TD7 S1     S1     S 0 1 N N N 17.171 11.868 -70.498 -1.309 -1.321 -0.706 S1     TD7 13 
TD7 C4     C4     C 0 1 N N N 17.883 13.731 -72.003 -1.316 0.911  0.357  C4     TD7 14 
TD7 CM4    CM4    C 0 1 N N N 18.736 14.824 -72.601 -0.947 2.291  0.838  CM4    TD7 15 
TD7 N3     N3     N 0 1 N N N 16.651 13.414 -72.376 -2.527 0.363  0.687  N3     TD7 16 
TD7 C2     C2     C 0 1 N N N 16.135 12.414 -71.726 -2.785 -0.920 0.202  C2     TD7 17 
TD7 OL1    OL1    O 0 1 N N N 14.257 11.547 -73.248 -4.861 -1.248 1.227  OL1    TD7 18 
TD7 CLB    CLB    C 0 1 N N N 14.028 11.304 -70.713 -4.020 -2.977 -0.353 CLB    TD7 19 
TD7 CLC    CLC    C 0 1 N N N 11.830 10.186 -70.825 -3.680 -5.428 -0.190 CLC    TD7 20 
TD7 OL2    OL2    O 0 1 N N N 11.110 9.845  -71.783 -4.125 -5.446 -1.314 OL2    TD7 21 
TD7 OL3    OL3    O 0 1 N N N 11.362 10.699 -69.787 -3.315 -6.575 0.405  OL3    TD7 22 
TD7 "C7'"  "C7'"  C 0 1 N N N 15.950 14.130 -73.456 -3.500 1.084  1.510  "C7'"  TD7 23 
TD7 "C5'"  "C5'"  C 0 1 Y N N 15.421 15.472 -72.978 -4.045 2.255  0.734  "C5'"  TD7 24 
TD7 "C6'"  "C6'"  C 0 1 Y N N 15.973 16.661 -73.426 -3.868 3.548  1.186  "C6'"  TD7 25 
TD7 "N1'"  "N1'"  N 0 1 Y N N 15.496 17.830 -72.993 -4.361 4.554  0.477  "N1'"  TD7 26 
TD7 "C2'"  "C2'"  C 0 1 Y N N 14.480 17.879 -72.151 -5.013 4.337  -0.648 "C2'"  TD7 27 
TD7 CM2    CM2    C 0 1 N N N 13.934 19.210 -71.708 -5.555 5.513  -1.419 CM2    TD7 28 
TD7 "N3'"  "N3'"  N 0 1 Y N N 13.906 16.781 -71.704 -5.204 3.121  -1.116 "N3'"  TD7 29 
TD7 "C4'"  "C4'"  C 0 1 Y N N 14.346 15.578 -72.079 -4.735 2.061  -0.464 "C4'"  TD7 30 
TD7 C13    C13    C 0 1 N N N 13.324 9.968  -70.928 -3.536 -4.120 0.543  C13    TD7 31 
TD7 "N4'"  "N4'"  N 0 1 N N N 13.694 14.461 -71.616 -4.933 0.783  -0.963 "N4'"  TD7 32 
TD7 C11    C11    C 0 1 N N N 14.796 11.744 -71.939 -3.876 -1.669 0.380  C11    TD7 33 
TD7 H1B    H1B    H 0 1 N N N 19.355 10.658 -67.775 8.120  1.796  0.911  H1B    TD7 34 
TD7 H2A    H2A    H 0 1 N N N 22.442 13.728 -66.507 4.572  1.787  1.849  H2A    TD7 35 
TD7 H71C   H71C   H 0 0 N N N 18.754 12.595 -68.478 1.896  -0.989 0.149  H71C   TD7 36 
TD7 H72C   H72C   H 0 0 N N N 18.838 14.386 -68.867 1.771  0.507  1.105  H72C   TD7 37 
TD7 H61C   H61C   H 0 0 N N N 20.353 13.910 -70.759 0.952  1.718  -0.899 H61C   TD7 38 
TD7 H62C   H62C   H 0 0 N N N 20.357 12.193 -70.403 1.077  0.221  -1.854 H62C   TD7 39 
TD7 HM41   HM41   H 0 0 N N N 18.943 15.587 -71.837 0.060  2.536  0.502  HM41   TD7 40 
TD7 HM42   HM42   H 0 0 N N N 19.684 14.395 -72.958 -1.652 3.017  0.432  HM42   TD7 41 
TD7 HM43   HM43   H 0 0 N N N 18.202 15.286 -73.444 -0.984 2.319  1.927  HM43   TD7 42 
TD7 "H7'1" "H7'1" H 0 0 N N N 16.653 14.300 -74.285 -4.317 0.415  1.778  "H7'1" TD7 43 
TD7 "H7'2" "H7'2" H 0 0 N N N 15.097 13.517 -73.783 -3.013 1.444  2.417  "H7'2" TD7 44 
TD7 HL1    HL1    H 0 1 N N N 13.309 11.503 -73.197 -5.643 -1.816 1.233  HL1    TD7 45 
TD7 HLB1   HLB1   H 0 0 N N N 13.270 12.067 -70.480 -3.422 -2.951 -1.264 HLB1   TD7 46 
TD7 HLB2   HLB2   H 0 0 N N N 14.745 11.183 -69.887 -5.068 -3.136 -0.610 HLB2   TD7 47 
TD7 H131   H131   H 0 0 N N N 13.574 9.572  -71.923 -2.489 -3.961 0.800  H131   TD7 48 
TD7 H132   H132   H 0 0 N N N 13.651 9.245  -70.166 -4.134 -4.146 1.454  H132   TD7 49 
TD7 HL3    HL3    H 0 1 N N N 10.418 10.772 -69.867 -3.426 -7.389 -0.105 HL3    TD7 50 
TD7 "H6'"  "H6'"  H 0 1 N N N 16.793 16.642 -74.129 -3.336 3.738  2.106  "H6'"  TD7 51 
TD7 HM21   HM21   H 0 0 N N N 13.801 19.207 -70.616 -4.803 5.859  -2.129 HM21   TD7 52 
TD7 HM22   HM22   H 0 0 N N N 14.638 20.007 -71.989 -6.452 5.211  -1.959 HM22   TD7 53 
TD7 HM23   HM23   H 0 0 N N N 12.964 19.388 -72.195 -5.801 6.319  -0.728 HM23   TD7 54 
TD7 "H4'1" "H4'1" H 0 0 N N N 13.536 13.829 -72.374 -4.673 0.011  -0.436 "H4'1" TD7 55 
TD7 "H4'2" "H4'2" H 0 0 N N N 14.255 14.013 -70.920 -5.331 0.661  -1.839 "H4'2" TD7 56 
TD7 H3B    H3B    H 0 1 N N N 21.829 10.740 -66.733 9.066  0.559  -1.835 H3B    TD7 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
TD7 O1B   PB     SING N N 1  
TD7 PB    O2B    DOUB N N 2  
TD7 PB    O3B    SING N N 3  
TD7 PB    O3A    SING N N 4  
TD7 O3A   PA     SING N N 5  
TD7 PA    O1A    DOUB N N 6  
TD7 PA    O2A    SING N N 7  
TD7 PA    O7     SING N N 8  
TD7 O7    C7     SING N N 9  
TD7 C7    C6     SING N N 10 
TD7 C6    C5     SING N N 11 
TD7 C5    S1     SING N N 12 
TD7 C5    C4     DOUB N N 13 
TD7 S1    C2     SING N N 14 
TD7 C4    CM4    SING N N 15 
TD7 C4    N3     SING N N 16 
TD7 N3    C2     SING N N 17 
TD7 N3    "C7'"  SING N N 18 
TD7 C2    C11    DOUB N N 19 
TD7 OL1   C11    SING N N 20 
TD7 CLB   C13    SING N N 21 
TD7 CLB   C11    SING N N 22 
TD7 CLC   OL2    DOUB N N 23 
TD7 CLC   OL3    SING N N 24 
TD7 CLC   C13    SING N N 25 
TD7 "C7'" "C5'"  SING N N 26 
TD7 "C5'" "C6'"  SING Y N 27 
TD7 "C5'" "C4'"  DOUB Y N 28 
TD7 "C6'" "N1'"  DOUB Y E 29 
TD7 "N1'" "C2'"  SING Y N 30 
TD7 "C2'" CM2    SING N N 31 
TD7 "C2'" "N3'"  DOUB Y N 32 
TD7 "N3'" "C4'"  SING Y N 33 
TD7 "C4'" "N4'"  SING N N 34 
TD7 O1B   H1B    SING N N 35 
TD7 O2A   H2A    SING N N 36 
TD7 C7    H71C   SING N N 37 
TD7 C7    H72C   SING N N 38 
TD7 C6    H61C   SING N N 39 
TD7 C6    H62C   SING N N 40 
TD7 CM4   HM41   SING N N 41 
TD7 CM4   HM42   SING N N 42 
TD7 CM4   HM43   SING N N 43 
TD7 "C7'" "H7'1" SING N N 44 
TD7 "C7'" "H7'2" SING N N 45 
TD7 OL1   HL1    SING N N 46 
TD7 CLB   HLB1   SING N N 47 
TD7 CLB   HLB2   SING N N 48 
TD7 C13   H131   SING N N 49 
TD7 C13   H132   SING N N 50 
TD7 OL3   HL3    SING N N 51 
TD7 "C6'" "H6'"  SING N N 52 
TD7 CM2   HM21   SING N N 53 
TD7 CM2   HM22   SING N N 54 
TD7 CM2   HM23   SING N N 55 
TD7 "N4'" "H4'1" SING N N 56 
TD7 "N4'" "H4'2" SING N N 57 
TD7 O3B   H3B    SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
TD7 SMILES           ACDLabs              10.04 "O=P(O)(O)OP(=O)(O)OCCC=1S\C(=C(\O)CCC(=O)O)N(C=1C)Cc2cnc(nc2N)C"                                                                                                                                   
TD7 SMILES_CANONICAL CACTVS               3.352 "Cc1ncc(CN2C(=C(CCO[P](O)(=O)O[P](O)(O)=O)S\C2=C(\O)CCC(O)=O)C)c(N)n1"                                                                                                                              
TD7 SMILES           CACTVS               3.352 "Cc1ncc(CN2C(=C(CCO[P](O)(=O)O[P](O)(O)=O)SC2=C(O)CCC(O)=O)C)c(N)n1"                                                                                                                                
TD7 SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "Cc1ncc(c(n1)N)CN2C(=C(SC2=C(CCC(=O)O)O)CCO[P@](=O)(O)OP(=O)(O)O)C"                                                                                                                                 
TD7 SMILES           "OpenEye OEToolkits" 1.6.1 "Cc1ncc(c(n1)N)CN2C(=C(SC2=C(CCC(=O)O)O)CCOP(=O)(O)OP(=O)(O)O)C"                                                                                                                                    
TD7 InChI            InChI                1.03  "InChI=1S/C16H24N4O10P2S/c1-9-13(5-6-29-32(27,28)30-31(24,25)26)33-16(12(21)3-4-14(22)23)20(9)8-11-7-18-10(2)19-15(11)17/h7,21H,3-6,8H2,1-2H3,(H,22,23)(H,27,28)(H2,17,18,19)(H2,24,25,26)/b16-12+" 
TD7 InChIKey         InChI                1.03  VGWJMSNWDAXPBE-FOWTUZBSSA-N                                                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
TD7 "SYSTEMATIC NAME" ACDLabs              10.04 "(4E)-4-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-2(3H)-ylidene}-4-hydroxybutanoic acid" 
TD7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "4-[3-[(4-amino-2-methyl-pyrimidin-5-yl)methyl]-5-[2-(hydroxy-phosphonooxy-phosphoryl)oxyethyl]-4-methyl-1,3-thiazol-2-ylidene]-4-hydroxy-butanoic acid"              
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
TD7 "Create component"     2010-10-05 EBI  
TD7 "Modify aromatic_flag" 2011-06-04 RCSB 
TD7 "Modify descriptor"    2011-06-04 RCSB 
# 
