data_QG7
#

_chem_comp.id                                   QG7
_chem_comp.name                                 "N-(2-{bis[(pyridin-2-yl)methyl]amino}ethyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H32 N6 O2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-10-25
_chem_comp.pdbx_modified_date                   2020-05-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       468.615
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    QG7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6UIU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
QG7  C10  C1   C  0  1  N  N  S  17.599  29.330   -9.639   -7.778   1.089   0.380  C10  QG7   1  
QG7  C15  C2   C  0  1  Y  N  N  27.981  25.650  -12.166    5.429  -4.218  -0.056  C15  QG7   2  
QG7  C17  C3   C  0  1  N  N  N  24.341  27.807  -15.185    5.740   0.545   1.095  C17  QG7   3  
QG7  C11  C4   C  0  1  N  N  N  25.115  25.569  -15.448    4.824  -0.151  -1.036  C11  QG7   4  
QG7  C12  C5   C  0  1  Y  N  N  26.077  25.629  -14.239    5.028  -1.604  -0.689  C12  QG7   5  
QG7  C14  C6   C  0  1  Y  N  N  26.773  24.939  -11.981    4.154  -3.809  -0.419  C14  QG7   6  
QG7  O2   O1   O  0  1  N  N  N  14.394  29.645   -8.225   -8.433   0.421  -2.952  O2   QG7   7  
QG7  C9   C7   C  0  1  N  N  N  15.585  29.526   -8.455   -8.415   0.492  -1.738  C9   QG7   8  
QG7  N1   N1   N  0  1  N  N  N  16.522  29.680   -7.528   -9.287  -0.157  -0.955  N1   QG7   9  
QG7  N2   N2   N  0  1  N  N  N  16.086  29.326   -9.698   -7.520   1.225  -1.062  N2   QG7  10  
QG7  C8   C8   C  0  1  N  N  R  17.905  29.584   -8.119   -8.985   0.145   0.453  C8   QG7  11  
QG7  C7   C9   C  0  1  N  N  N  18.598  28.297   -7.600   -8.660  -1.167   1.195  C7   QG7  12  
QG7  S1   S1   S  0  1  N  N  N  18.047  26.904   -8.573   -6.838  -1.311   0.983  S1   QG7  13  
QG7  C6   C10  C  0  1  N  N  S  18.137  27.974  -10.041   -6.532   0.503   1.073  C6   QG7  14  
QG7  C5   C11  C  0  1  N  N  N  17.614  27.387  -11.355   -5.261   0.870   0.304  C5   QG7  15  
QG7  C4   C12  C  0  1  N  N  N  18.460  26.231  -11.857   -4.036   0.384   1.081  C4   QG7  16  
QG7  C3   C13  C  0  1  N  N  N  17.760  25.548  -13.043   -2.766   0.751   0.312  C3   QG7  17  
QG7  C2   C14  C  0  1  N  N  N  18.612  24.492  -13.724   -1.541   0.264   1.089  C2   QG7  18  
QG7  C1   C15  C  0  1  N  N  N  19.908  25.026  -14.372   -0.289   0.625   0.331  C1   QG7  19  
QG7  C24  C16  C  0  1  N  N  N  22.191  24.740  -14.976    2.135   0.645   0.092  C24  QG7  20  
QG7  O1   O2   O  0  1  N  N  N  19.888  26.056  -15.063   -0.369   1.214  -0.726  O1   QG7  21  
QG7  N6   N3   N  0  1  N  N  N  21.067  24.301  -14.117    0.919   0.294   0.828  N6   QG7  22  
QG7  C23  C17  C  0  1  N  N  N  22.924  25.918  -14.358    3.360   0.158   0.869  C23  QG7  23  
QG7  N3   N4   N  0  1  N  N  N  23.927  26.416  -15.332    4.582   0.616   0.194  N3   QG7  24  
QG7  N4   N5   N  0  1  Y  N  N  27.238  26.315  -14.353    6.224  -2.026  -0.329  N4   QG7  25  
QG7  C16  C18  C  0  1  Y  N  N  28.186  26.324  -13.351    6.450  -3.289  -0.022  C16  QG7  26  
QG7  C13  C19  C  0  1  Y  N  N  25.841  24.932  -13.071    3.956  -2.475  -0.740  C13  QG7  27  
QG7  N5   N6   N  0  1  Y  N  N  22.244  28.370  -16.500    7.686   0.587  -0.383  N5   QG7  28  
QG7  C18  C20  C  0  1  Y  N  N  23.399  28.804  -15.830    6.914   1.244   0.461  C18  QG7  29  
QG7  C22  C21  C  0  1  Y  N  N  21.415  29.299  -17.082    8.724   1.158  -0.962  C22  QG7  30  
QG7  C21  C22  C  0  1  Y  N  N  21.765  30.686  -16.994    9.041   2.478  -0.702  C21  QG7  31  
QG7  C20  C23  C  0  1  Y  N  N  22.950  31.117  -16.336    8.252   3.201   0.179  C20  QG7  32  
QG7  C19  C24  C  0  1  Y  N  N  23.807  30.137  -15.738    7.170   2.567   0.769  C19  QG7  33  
QG7  H1   H1   H  0  1  N  N  N  18.024  30.132  -10.260   -8.030   2.057   0.812  H1   QG7  34  
QG7  H2   H2   H  0  1  N  N  N  28.732  25.665  -11.390    5.620  -5.250   0.200  H2   QG7  35  
QG7  H3   H3   H  0  1  N  N  N  25.334  27.922  -15.644    5.495   1.030   2.040  H3   QG7  36  
QG7  H4   H4   H  0  1  N  N  N  24.405  28.037  -14.111    5.994  -0.499   1.278  H4   QG7  37  
QG7  H5   H5   H  0  1  N  N  N  24.782  24.528  -15.568    5.714   0.232  -1.534  H5   QG7  38  
QG7  H6   H6   H  0  1  N  N  N  25.672  25.882  -16.344    3.965  -0.054  -1.700  H6   QG7  39  
QG7  H7   H7   H  0  1  N  N  N  26.561  24.422  -11.057    3.336  -4.513  -0.451  H7   QG7  40  
QG7  H8   H8   H  0  1  N  N  N  16.334  29.840   -6.559  -10.003  -0.733  -1.266  H8   QG7  41  
QG7  H9   H9   H  0  1  N  N  N  15.541  29.196  -10.526   -6.815   1.760  -1.459  H9   QG7  42  
QG7  H10  H10  H  0  1  N  N  N  18.512  30.487   -7.959   -9.828   0.646   0.927  H10  QG7  43  
QG7  H11  H11  H  0  1  N  N  N  18.334  28.136   -6.544   -8.921  -1.089   2.250  H11  QG7  44  
QG7  H12  H12  H  0  1  N  N  N  19.689  28.403   -7.693   -9.173  -2.010   0.732  H12  QG7  45  
QG7  H13  H13  H  0  1  N  N  N  19.219  28.110  -10.186   -6.470   0.842   2.107  H13  QG7  46  
QG7  H14  H14  H  0  1  N  N  N  17.612  28.179  -12.118   -5.281   0.397  -0.678  H14  QG7  47  
QG7  H15  H15  H  0  1  N  N  N  16.586  27.028  -11.196   -5.209   1.952   0.184  H15  QG7  48  
QG7  H16  H16  H  0  1  N  N  N  18.599  25.501  -11.046   -4.017   0.857   2.062  H16  QG7  49  
QG7  H17  H17  H  0  1  N  N  N  19.440  26.610  -12.181   -4.089  -0.699   1.201  H17  QG7  50  
QG7  H18  H18  H  0  1  N  N  N  17.501  26.318  -13.785   -2.786   0.277  -0.670  H18  QG7  51  
QG7  H19  H19  H  0  1  N  N  N  16.840  25.069  -12.676   -2.713   1.833   0.192  H19  QG7  52  
QG7  H20  H20  H  0  1  N  N  N  18.006  24.018  -14.510   -1.521   0.738   2.070  H20  QG7  53  
QG7  H21  H21  H  0  1  N  N  N  18.890  23.739  -12.972   -1.593  -0.818   1.209  H21  QG7  54  
QG7  H22  H22  H  0  1  N  N  N  21.797  25.038  -15.959    2.116   0.171  -0.890  H22  QG7  55  
QG7  H23  H23  H  0  1  N  N  N  22.895  23.904  -15.101    2.188   1.727  -0.028  H23  QG7  56  
QG7  H24  H24  H  0  1  N  N  N  21.134  23.572  -13.436    0.983  -0.177   1.674  H24  QG7  57  
QG7  H25  H25  H  0  1  N  N  N  23.431  25.597  -13.436    3.332   0.561   1.881  H25  QG7  58  
QG7  H26  H26  H  0  1  N  N  N  22.207  26.718  -14.123    3.355  -0.931   0.910  H26  QG7  59  
QG7  H28  H28  H  0  1  N  N  N  29.106  26.870  -13.498    7.446  -3.599   0.259  H28  QG7  60  
QG7  H29  H29  H  0  1  N  N  N  24.927  24.364  -12.975    2.979  -2.124  -1.035  H29  QG7  61  
QG7  H30  H30  H  0  1  N  N  N  20.517  28.990  -17.596    9.334   0.588  -1.647  H30  QG7  62  
QG7  H31  H31  H  0  1  N  N  N  21.112  31.423  -17.439    9.893   2.940  -1.179  H31  QG7  63  
QG7  H32  H32  H  0  1  N  N  N  23.200  32.167  -16.288    8.476   4.234   0.402  H32  QG7  64  
QG7  H33  H33  H  0  1  N  N  N  24.724  30.415  -15.240    6.534   3.100   1.460  H33  QG7  65  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
QG7  C22  C21  DOUB  Y  N   1  
QG7  C22  N5   SING  Y  N   2  
QG7  C21  C20  SING  Y  N   3  
QG7  N5   C18  DOUB  Y  N   4  
QG7  C20  C19  DOUB  Y  N   5  
QG7  C18  C19  SING  Y  N   6  
QG7  C18  C17  SING  N  N   7  
QG7  C11  N3   SING  N  N   8  
QG7  C11  C12  SING  N  N   9  
QG7  N3   C17  SING  N  N  10  
QG7  N3   C23  SING  N  N  11  
QG7  O1   C1   DOUB  N  N  12  
QG7  C24  C23  SING  N  N  13  
QG7  C24  N6   SING  N  N  14  
QG7  C1   N6   SING  N  N  15  
QG7  C1   C2   SING  N  N  16  
QG7  N4   C12  DOUB  Y  N  17  
QG7  N4   C16  SING  Y  N  18  
QG7  C12  C13  SING  Y  N  19  
QG7  C2   C3   SING  N  N  20  
QG7  C16  C15  DOUB  Y  N  21  
QG7  C13  C14  DOUB  Y  N  22  
QG7  C3   C4   SING  N  N  23  
QG7  C15  C14  SING  Y  N  24  
QG7  C4   C5   SING  N  N  25  
QG7  C5   C6   SING  N  N  26  
QG7  C6   C10  SING  N  N  27  
QG7  C6   S1   SING  N  N  28  
QG7  N2   C10  SING  N  N  29  
QG7  N2   C9   SING  N  N  30  
QG7  C10  C8   SING  N  N  31  
QG7  S1   C7   SING  N  N  32  
QG7  C9   O2   DOUB  N  N  33  
QG7  C9   N1   SING  N  N  34  
QG7  C8   C7   SING  N  N  35  
QG7  C8   N1   SING  N  N  36  
QG7  C10  H1   SING  N  N  37  
QG7  C15  H2   SING  N  N  38  
QG7  C17  H3   SING  N  N  39  
QG7  C17  H4   SING  N  N  40  
QG7  C11  H5   SING  N  N  41  
QG7  C11  H6   SING  N  N  42  
QG7  C14  H7   SING  N  N  43  
QG7  N1   H8   SING  N  N  44  
QG7  N2   H9   SING  N  N  45  
QG7  C8   H10  SING  N  N  46  
QG7  C7   H11  SING  N  N  47  
QG7  C7   H12  SING  N  N  48  
QG7  C6   H13  SING  N  N  49  
QG7  C5   H14  SING  N  N  50  
QG7  C5   H15  SING  N  N  51  
QG7  C4   H16  SING  N  N  52  
QG7  C4   H17  SING  N  N  53  
QG7  C3   H18  SING  N  N  54  
QG7  C3   H19  SING  N  N  55  
QG7  C2   H20  SING  N  N  56  
QG7  C2   H21  SING  N  N  57  
QG7  C24  H22  SING  N  N  58  
QG7  C24  H23  SING  N  N  59  
QG7  N6   H24  SING  N  N  60  
QG7  C23  H25  SING  N  N  61  
QG7  C23  H26  SING  N  N  62  
QG7  C16  H28  SING  N  N  63  
QG7  C13  H29  SING  N  N  64  
QG7  C22  H30  SING  N  N  65  
QG7  C21  H31  SING  N  N  66  
QG7  C20  H32  SING  N  N  67  
QG7  C19  H33  SING  N  N  68  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
QG7  SMILES            ACDLabs               12.01  "C12C(NC(=O)N1)CSC2CCCCC(NCCN(Cc3ncccc3)Cc4ccccn4)=O"  
QG7  InChI             InChI                 1.03   "InChI=1S/C24H32N6O2S/c31-22(10-2-1-9-21-23-20(17-33-21)28-24(32)29-23)27-13-14-30(15-18-7-3-5-11-25-18)16-19-8-4-6-12-26-19/h3-8,11-12,20-21,23H,1-2,9-10,13-17H2,(H,27,31)(H2,28,29,32)/t20-,21-,23-/m0/s1"  
QG7  InChIKey          InChI                 1.03   GXLJCVSDSFWSLD-FUDKSRODSA-N  
QG7  SMILES_CANONICAL  CACTVS                3.385  "O=C(CCCC[C@@H]1SC[C@@H]2NC(=O)N[C@H]12)NCCN(Cc3ccccn3)Cc4ccccn4"  
QG7  SMILES            CACTVS                3.385  "O=C(CCCC[CH]1SC[CH]2NC(=O)N[CH]12)NCCN(Cc3ccccn3)Cc4ccccn4"  
QG7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccnc(c1)CN(CCNC(=O)CCCC[C@H]2[C@@H]3[C@H](CS2)NC(=O)N3)Cc4ccccn4"  
QG7  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccnc(c1)CN(CCNC(=O)CCCCC2C3C(CS2)NC(=O)N3)Cc4ccccn4"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
QG7  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-(2-{bis[(pyridin-2-yl)methyl]amino}ethyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide"  
QG7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-[2-[bis(pyridin-2-ylmethyl)amino]ethyl]pentanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
QG7  "Create component"  2019-10-25  RCSB  
QG7  "Initial release"   2020-05-06  RCSB  
##
