data_N57
#

_chem_comp.id                                   N57
_chem_comp.name                                 "(2S,3S,4R)-2-amino-3,4-dihydroxyoctadecyl alpha-D-galactopyranoside"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H49 N O8"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-05-03
_chem_comp.pdbx_modified_date                   2019-05-10
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       479.648
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    N57
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5VCJ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
N57  C17  C1   C  0  1  N  N  N  -44.196  -32.811   7.903  15.323   1.975   0.191  C17  N57   1  
N57  C16  C2   C  0  1  N  N  N  -45.385  -31.846   7.950  14.288   0.850   0.266  C16  N57   2  
N57  C15  C3   C  0  1  N  N  N  -44.920  -30.385   8.127  12.884   1.437   0.107  C15  N57   3  
N57  C14  C4   C  0  1  N  N  N  -45.976  -29.631   8.947  11.850   0.312   0.183  C14  N57   4  
N57  C13  C5   C  0  1  N  N  N  -45.830  -28.105   8.847  10.446   0.898   0.024  C13  N57   5  
N57  C12  C6   C  0  1  N  N  N  -47.083  -27.456   9.482   9.411  -0.226   0.100  C12  N57   6  
N57  C11  C7   C  0  1  N  N  N  -46.726  -26.226  10.328   8.007   0.360  -0.060  C11  N57   7  
N57  C10  C8   C  0  1  N  N  N  -47.868  -25.835  11.294   6.973  -0.765   0.016  C10  N57   8  
N57  C9   C9   C  0  1  N  N  N  -47.392  -25.999  12.739   5.569  -0.178  -0.143  C9   N57   9  
N57  C8   C10  C  0  1  N  N  N  -48.361  -25.348  13.736   4.535  -1.303  -0.067  C8   N57  10  
N57  C7   C11  C  0  1  N  N  N  -49.671  -26.136  13.825   3.131  -0.716  -0.226  C7   N57  11  
N57  C6   C12  C  0  1  N  N  N  -50.346  -25.914  15.189   2.096  -1.841  -0.150  C6   N57  12  
N57  C5   C13  C  0  1  N  N  N  -49.993  -27.054  16.162   0.692  -1.255  -0.310  C5   N57  13  
N57  C4   C14  C  0  1  N  N  N  -51.033  -27.193  17.286  -0.342  -2.380  -0.234  C4   N57  14  
N57  C3   C15  C  0  1  N  N  R  -52.431  -27.581  16.762  -1.746  -1.793  -0.393  C3   N57  15  
N57  O32  O1   O  0  1  N  N  N  -52.345  -28.430  15.600  -1.885  -1.239  -1.703  O32  N57  16  
N57  C2   C16  C  0  1  N  N  S  -53.253  -28.304  17.847  -2.786  -2.897  -0.193  C2   N57  17  
N57  O1   O2   O  0  1  N  N  N  -52.710  -29.614  18.054  -2.724  -3.372   1.153  O1   N57  18  
N57  C1   C17  C  0  1  N  N  S  -53.282  -27.527  19.187  -4.183  -2.339  -0.473  C1   N57  19  
N57  N    N1   N  0  1  N  N  N  -53.555  -26.099  18.968  -5.168  -3.427  -0.400  N    N57  20  
N57  C    C18  C  0  1  N  N  N  -54.364  -28.114  20.099  -4.524  -1.271   0.568  C    N57  21  
N57  OC1  O3   O  0  1  N  N  N  -55.635  -28.016  19.453  -5.777  -0.669   0.239  OC1  N57  22  
N57  CG1  C19  C  0  1  N  N  S  -56.680  -28.708  20.161  -6.191   0.348   1.154  CG1  N57  23  
N57  OG   O4   O  0  1  N  N  N  -57.016  -28.089  21.436  -5.344   1.491   1.010  OG   N57  24  
N57  CG   C20  C  0  1  N  N  R  -57.511  -26.737  21.300  -5.341   2.053  -0.304  CG   N57  25  
N57  CG5  C21  C  0  1  N  N  N  -57.772  -26.147  22.695  -4.384   3.246  -0.345  CG5  N57  26  
N57  OG6  O5   O  0  1  N  N  N  -56.603  -25.440  23.139  -3.047   2.792  -0.125  OG6  N57  27  
N57  CG4  C22  C  0  1  N  N  R  -58.787  -26.739  20.463  -6.754   2.520  -0.662  CG4  N57  28  
N57  OG5  O6   O  0  1  N  N  N  -59.808  -27.495  21.131  -7.163   3.545   0.246  OG5  N57  29  
N57  CG3  C23  C  0  1  N  N  S  -58.497  -27.360  19.102  -7.717   1.332  -0.559  CG3  N57  30  
N57  OG4  O7   O  0  1  N  N  N  -59.713  -27.457  18.354  -9.050   1.774  -0.820  OG4  N57  31  
N57  CG2  C24  C  0  1  N  N  R  -57.906  -28.755  19.266  -7.638   0.746   0.854  CG2  N57  32  
N57  OG3  O8   O  0  1  N  N  N  -57.519  -29.262  17.983  -8.478  -0.407   0.940  OG3  N57  33  
N57  H1   H1   H  0  1  N  N  N  -44.563  -33.840   7.776  15.245   2.475  -0.775  H1   N57  34  
N57  H2   H2   H  0  1  N  N  N  -43.544  -32.548   7.057  15.137   2.694   0.988  H2   N57  35  
N57  H3   H3   H  0  1  N  N  N  -43.627  -32.738   8.842  16.323   1.557   0.304  H3   N57  36  
N57  H4   H4   H  0  1  N  N  N  -45.951  -31.930   7.010  14.474   0.131  -0.531  H4   N57  37  
N57  H5   H5   H  0  1  N  N  N  -46.034  -32.119   8.795  14.366   0.350   1.232  H5   N57  38  
N57  H6   H6   H  0  1  N  N  N  -43.956  -30.364   8.656  12.698   2.156   0.905  H6   N57  39  
N57  H7   H7   H  0  1  N  N  N  -44.808  -29.910   7.141  12.807   1.937  -0.858  H7   N57  40  
N57  H8   H8   H  0  1  N  N  N  -46.974  -29.913   8.580  12.036  -0.407  -0.615  H8   N57  41  
N57  H9   H9   H  0  1  N  N  N  -45.877  -29.925  10.002  11.927  -0.188   1.148  H9   N57  42  
N57  H10  H10  H  0  1  N  N  N  -44.929  -27.781   9.388  10.260   1.617   0.822  H10  N57  43  
N57  H11  H11  H  0  1  N  N  N  -45.751  -27.807   7.791  10.368   1.399  -0.942  H11  N57  44  
N57  H12  H12  H  0  1  N  N  N  -47.769  -27.148   8.679   9.597  -0.946  -0.698  H12  N57  45  
N57  H13  H13  H  0  1  N  N  N  -47.580  -28.197  10.125   9.489  -0.727   1.065  H13  N57  46  
N57  H14  H14  H  0  1  N  N  N  -45.824  -26.450  10.917   7.821   1.079   0.738  H14  N57  47  
N57  H15  H15  H  0  1  N  N  N  -46.524  -25.379   9.656   7.930   0.860  -1.025  H15  N57  48  
N57  H16  H16  H  0  1  N  N  N  -48.154  -24.787  11.119   7.159  -1.484  -0.781  H16  N57  49  
N57  H17  H17  H  0  1  N  N  N  -48.737  -26.487  11.118   7.050  -1.265   0.982  H17  N57  50  
N57  H18  H18  H  0  1  N  N  N  -47.313  -27.072  12.968   5.383   0.541   0.655  H18  N57  51  
N57  H19  H19  H  0  1  N  N  N  -46.404  -25.528  12.844   5.492   0.322  -1.108  H19  N57  52  
N57  H20  H20  H  0  1  N  N  N  -47.890  -25.321  14.730   4.721  -2.022  -0.865  H20  N57  53  
N57  H21  H21  H  0  1  N  N  N  -48.581  -24.322  13.406   4.612  -1.803   0.898  H21  N57  54  
N57  H22  H22  H  0  1  N  N  N  -50.350  -25.800  13.027   2.945   0.003   0.571  H22  N57  55  
N57  H23  H23  H  0  1  N  N  N  -49.457  -27.208  13.698   3.053  -0.216  -1.192  H23  N57  56  
N57  H24  H24  H  0  1  N  N  N  -50.001  -24.959  15.611   2.282  -2.560  -0.948  H24  N57  57  
N57  H25  H25  H  0  1  N  N  N  -51.437  -25.881  15.051   2.174  -2.342   0.815  H25  N57  58  
N57  H26  H26  H  0  1  N  N  N  -49.948  -27.999  15.601   0.506  -0.536   0.488  H26  N57  59  
N57  H27  H27  H  0  1  N  N  N  -49.010  -26.847  16.611   0.615  -0.754  -1.275  H27  N57  60  
N57  H28  H28  H  0  1  N  N  N  -50.692  -27.970  17.986  -0.156  -3.099  -1.032  H28  N57  61  
N57  H29  H29  H  0  1  N  N  N  -51.110  -26.231  17.814  -0.265  -2.880   0.732  H29  N57  62  
N57  H30  H30  H  0  1  N  N  N  -52.962  -26.655  16.496  -1.900  -1.011   0.350  H30  N57  63  
N57  H31  H31  H  0  1  N  N  N  -53.220  -28.650  15.303  -1.761  -1.880  -2.416  H31  N57  64  
N57  H32  H32  H  0  1  N  N  N  -54.288  -28.392  17.486  -2.579  -3.720  -0.878  H32  N57  65  
N57  H33  H33  H  0  1  N  N  N  -53.213  -30.064  18.722  -2.898  -2.692   1.818  H33  N57  66  
N57  H34  H34  H  0  1  N  N  N  -52.305  -27.643  19.679  -4.204  -1.896  -1.469  H34  N57  67  
N57  H35  H35  H  0  1  N  N  N  -53.568  -25.623  19.847  -5.017  -4.102  -1.135  H35  N57  68  
N57  H36  H36  H  0  1  N  N  N  -52.840  -25.708  18.388  -5.152  -3.869   0.506  H36  N57  69  
N57  H38  H38  H  0  1  N  N  N  -54.137  -29.171  20.304  -4.590  -1.733   1.553  H38  N57  70  
N57  H39  H39  H  0  1  N  N  N  -54.389  -27.554  21.045  -3.745  -0.509   0.575  H39  N57  71  
N57  H40  H40  H  0  1  N  N  N  -56.358  -29.743  20.347  -6.121  -0.030   2.174  H40  N57  72  
N57  H41  H41  H  0  1  N  N  N  -56.758  -26.115  20.793  -5.014   1.300  -1.020  H41  N57  73  
N57  H42  H42  H  0  1  N  N  N  -58.624  -25.453  22.647  -4.447   3.729  -1.321  H42  N57  74  
N57  H43  H43  H  0  1  N  N  N  -58.000  -26.960  23.401  -4.658   3.960   0.432  H43  N57  75  
N57  H44  H44  H  0  1  N  N  N  -56.762  -25.074  24.001  -2.385   3.497  -0.138  H44  N57  76  
N57  H45  H45  H  0  1  N  N  N  -59.119  -25.700  20.318  -6.762   2.909  -1.679  H45  N57  77  
N57  H46  H46  H  0  1  N  N  N  -59.987  -27.106  21.979  -8.051   3.888   0.077  H46  N57  78  
N57  H47  H47  H  0  1  N  N  N  -57.773  -26.727  18.568  -7.435   0.570  -1.286  H47  N57  79  
N57  H48  H48  H  0  1  N  N  N  -60.089  -26.591  18.247  -9.715   1.074  -0.765  H48  N57  80  
N57  H49  H49  H  0  1  N  N  N  -58.660  -29.412  19.724  -7.968   1.493   1.577  H49  N57  81  
N57  H50  H50  H  0  1  N  N  N  -57.150  -30.132  18.084  -8.477  -0.830   1.810  H50  N57  82  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
N57  C17  C16  SING  N  N   1  
N57  C16  C15  SING  N  N   2  
N57  C15  C14  SING  N  N   3  
N57  C13  C14  SING  N  N   4  
N57  C13  C12  SING  N  N   5  
N57  C12  C11  SING  N  N   6  
N57  C11  C10  SING  N  N   7  
N57  C10  C9   SING  N  N   8  
N57  C9   C8   SING  N  N   9  
N57  C8   C7   SING  N  N  10  
N57  C7   C6   SING  N  N  11  
N57  C6   C5   SING  N  N  12  
N57  O32  C3   SING  N  N  13  
N57  C5   C4   SING  N  N  14  
N57  C3   C4   SING  N  N  15  
N57  C3   C2   SING  N  N  16  
N57  C2   O1   SING  N  N  17  
N57  C2   C1   SING  N  N  18  
N57  OG3  CG2  SING  N  N  19  
N57  OG4  CG3  SING  N  N  20  
N57  N    C1   SING  N  N  21  
N57  CG3  CG2  SING  N  N  22  
N57  CG3  CG4  SING  N  N  23  
N57  C1   C    SING  N  N  24  
N57  CG2  CG1  SING  N  N  25  
N57  OC1  C    SING  N  N  26  
N57  OC1  CG1  SING  N  N  27  
N57  CG1  OG   SING  N  N  28  
N57  CG4  OG5  SING  N  N  29  
N57  CG4  CG   SING  N  N  30  
N57  CG   OG   SING  N  N  31  
N57  CG   CG5  SING  N  N  32  
N57  CG5  OG6  SING  N  N  33  
N57  C17  H1   SING  N  N  34  
N57  C17  H2   SING  N  N  35  
N57  C17  H3   SING  N  N  36  
N57  C16  H4   SING  N  N  37  
N57  C16  H5   SING  N  N  38  
N57  C15  H6   SING  N  N  39  
N57  C15  H7   SING  N  N  40  
N57  C14  H8   SING  N  N  41  
N57  C14  H9   SING  N  N  42  
N57  C13  H10  SING  N  N  43  
N57  C13  H11  SING  N  N  44  
N57  C12  H12  SING  N  N  45  
N57  C12  H13  SING  N  N  46  
N57  C11  H14  SING  N  N  47  
N57  C11  H15  SING  N  N  48  
N57  C10  H16  SING  N  N  49  
N57  C10  H17  SING  N  N  50  
N57  C9   H18  SING  N  N  51  
N57  C9   H19  SING  N  N  52  
N57  C8   H20  SING  N  N  53  
N57  C8   H21  SING  N  N  54  
N57  C7   H22  SING  N  N  55  
N57  C7   H23  SING  N  N  56  
N57  C6   H24  SING  N  N  57  
N57  C6   H25  SING  N  N  58  
N57  C5   H26  SING  N  N  59  
N57  C5   H27  SING  N  N  60  
N57  C4   H28  SING  N  N  61  
N57  C4   H29  SING  N  N  62  
N57  C3   H30  SING  N  N  63  
N57  O32  H31  SING  N  N  64  
N57  C2   H32  SING  N  N  65  
N57  O1   H33  SING  N  N  66  
N57  C1   H34  SING  N  N  67  
N57  N    H35  SING  N  N  68  
N57  N    H36  SING  N  N  69  
N57  C    H38  SING  N  N  70  
N57  C    H39  SING  N  N  71  
N57  CG1  H40  SING  N  N  72  
N57  CG   H41  SING  N  N  73  
N57  CG5  H42  SING  N  N  74  
N57  CG5  H43  SING  N  N  75  
N57  OG6  H44  SING  N  N  76  
N57  CG4  H45  SING  N  N  77  
N57  OG5  H46  SING  N  N  78  
N57  CG3  H47  SING  N  N  79  
N57  OG4  H48  SING  N  N  80  
N57  CG2  H49  SING  N  N  81  
N57  OG3  H50  SING  N  N  82  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
N57  SMILES            ACDLabs               12.01  "CCCCCCCCCCCCCCC(C(O)C(COC1OC(CO)C(O)C(C1O)O)N)O"  
N57  InChI             InChI                 1.03   "InChI=1S/C24H49NO8/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-18(27)20(28)17(25)16-32-24-23(31)22(30)21(29)19(15-26)33-24/h17-24,26-31H,2-16,25H2,1H3/t17-,18+,19+,20-,21-,22-,23+,24-/m0/s1"  
N57  InChIKey          InChI                 1.03   CBKONJDETAETLR-MKQNOXKVSA-N  
N57  SMILES_CANONICAL  CACTVS                3.385  "CCCCCCCCCCCCCC[C@@H](O)[C@@H](O)[C@@H](N)CO[C@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O"  
N57  SMILES            CACTVS                3.385  "CCCCCCCCCCCCCC[CH](O)[CH](O)[CH](N)CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O"  
N57  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCCCCCCCCCCCCC[C@H]([C@H]([C@H](CO[C@@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)N)O)O"  
N57  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCCCCCCCCCCCCC(C(C(COC1C(C(C(C(O1)CO)O)O)O)N)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
N57  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2S,3S,4R)-2-amino-3,4-dihydroxyoctadecyl alpha-D-galactopyranoside"  
N57  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S},3~{R},4~{S},5~{R},6~{R})-2-[(2~{S},3~{S},4~{R})-2-azanyl-3,4-bis(oxidanyl)octadecoxy]-6-(hydroxymethyl)oxane-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
N57  "Create component"  2019-05-03  RCSB  
N57  "Initial release"   2019-05-15  RCSB  
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