data_JI7
#

_chem_comp.id                                   JI7
_chem_comp.name                                 "N-{(3R,4S)-4-[(6-amino-4-methylpyridin-2-yl)methyl]pyrrolidin-3-yl}-N'-(3-chlorobenzyl)ethane-1,2-diamine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H28 Cl N5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;(+-)-N1-{trans-4'-[(6"-amino-4"-methylpyridin-2"-yl)methyl]pyrrolidin-3'-yl}-N2-(3'-chlorobenzyl)ethane-1,2-diamine
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2007-10-23
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       373.923
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JI7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3B3P
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JI7  C5      C5      C   0  1  Y  N  N  10.594  -0.077  59.946   7.430   1.247  -0.256  C5      JI7   1  
JI7  C4      C4      C   0  1  Y  N  N  11.075   1.202  60.334   6.464   2.226  -0.110  C4      JI7   2  
JI7  C3      C3      C   0  1  Y  N  N  12.153   1.767  59.590   5.183   1.842   0.262  C3      JI7   3  
JI7  C2      C2      C   0  1  Y  N  N  12.701   1.045  58.508   4.912   0.505   0.475  C2      JI7   4  
JI7  N1      N1      N   0  1  Y  N  N  12.217  -0.191  58.155   5.854  -0.407   0.330  N1      JI7   5  
JI7  C6      C6      C   0  1  Y  N  N  11.194  -0.759  58.835   7.086  -0.082  -0.030  C6      JI7   6  
JI7  C7      C7      C   0  1  N  N  N  13.835   1.530  57.636   3.523   0.083   0.880  C7      JI7   7  
JI7  "C4'"   "C4'"   C   0  1  N  N  S  15.282   1.378  58.172   3.005  -0.971  -0.101  "C4'"   JI7   8  
JI7  "C3'"   "C3'"   C   0  1  N  N  R  16.283   1.884  57.094   1.559  -1.379   0.265  "C3'"   JI7   9  
JI7  "C2'"   "C2'"   C   0  1  N  N  N  16.879   0.566  56.508   1.555  -2.907   0.008  "C2'"   JI7  10  
JI7  "N1'"   "N1'"   N   0  1  N  N  N  16.099  -0.532  57.077   2.905  -3.332   0.460  "N1'"   JI7  11  
JI7  "C5'"   "C5'"   C   0  1  N  N  N  15.747  -0.069  58.420   3.831  -2.266   0.021  "C5'"   JI7  12  
JI7  N8      N8      N   0  1  N  N  N  17.319   2.777  57.669   0.592  -0.702  -0.609  N8      JI7  13  
JI7  C9      C9      C   0  1  N  N  N  17.081   4.214  57.413  -0.718  -0.586   0.046  C9      JI7  14  
JI7  C10     C10     C   0  1  N  N  N  17.231   4.581  55.921  -1.697   0.123  -0.892  C10     JI7  15  
JI7  N11     N11     N   0  1  N  N  N  18.346   5.517  55.703  -3.006   0.239  -0.237  N11     JI7  16  
JI7  C12     C12     C   0  1  N  N  N  19.141   5.101  54.545  -3.974   0.916  -1.110  C12     JI7  17  
JI7  C26     C26     C   0  1  Y  N  N  20.308   6.029  54.251  -5.302   1.017  -0.406  C26     JI7  18  
JI7  C25     C25     C   0  1  Y  N  N  21.661   5.560  54.262  -5.587   2.120   0.377  C25     JI7  19  
JI7  C24     C24     C   0  1  Y  N  N  22.741   6.443  53.958  -6.805   2.213   1.024  C24     JI7  20  
JI7  C23     C23     C   0  1  Y  N  N  22.481   7.803  53.641  -7.739   1.203   0.888  C23     JI7  21  
JI7  C22     C22     C   0  1  Y  N  N  21.131   8.285  53.636  -7.455   0.099   0.105  C22     JI7  22  
JI7  C21     C21     C   0  1  Y  N  N  20.057   7.401  53.939  -6.237   0.009  -0.547  C21     JI7  23  
JI7  CL      CL      CL  0  0  N  N  N  20.796   9.934  53.270  -8.627  -1.170  -0.066  CL      JI7  24  
JI7  C8      C8      C   0  1  N  N  N  10.478   1.946  61.495   6.795   3.676  -0.350  C8      JI7  25  
JI7  N6      N6      N   0  1  N  N  N  10.707  -1.987  58.485   8.047  -1.076  -0.172  N6      JI7  26  
JI7  H5      H5      H   0  1  N  N  N   9.779  -0.535  60.486   8.437   1.510  -0.545  H5      JI7  27  
JI7  H3      H3      H   0  1  N  N  N  12.546   2.738  59.852   4.406   2.582   0.384  H3      JI7  28  
JI7  H71     1H7     H   0  1  N  N  N  13.670   2.605  57.471   3.550  -0.338   1.885  H71     JI7  29  
JI7  H72     2H7     H   0  1  N  N  N  13.798   0.886  56.745   2.861   0.949   0.865  H72     JI7  30  
JI7  "H4'"   "H4'"   H   0  1  N  N  N  15.269   1.936  59.120   3.046  -0.591  -1.121  "H4'"   JI7  31  
JI7  "H3'"   "H3'"   H   0  1  N  N  N  15.805   2.506  56.322   1.350  -1.161   1.312  "H3'"   JI7  32  
JI7  "H2'1"  "1H2'"  H   0  0  N  N  N  17.939   0.468  56.783   0.780  -3.395   0.600  "H2'1"  JI7  33  
JI7  "H2'2"  "2H2'"  H   0  0  N  N  N  16.826   0.562  55.409   1.420  -3.118  -1.053  "H2'2"  JI7  34  
JI7  "HN1'"  "HN1'"  H   0  0  N  N  N  15.281  -0.716  56.532   2.932  -3.444   1.462  "HN1'"  JI7  35  
JI7  "H5'1"  "1H5'"  H   0  0  N  N  N  14.950  -0.682  58.867   4.261  -2.523  -0.947  "H5'1"  JI7  36  
JI7  "H5'2"  "2H5'"  H   0  0  N  N  N  16.581  -0.139  59.134   4.622  -2.133   0.758  "H5'2"  JI7  37  
JI7  HN8     HN8     H   0  1  N  N  N  17.333   2.637  58.659   0.934   0.202  -0.896  HN8     JI7  38  
JI7  H91     1H9     H   0  1  N  N  N  17.813   4.797  57.991  -1.096  -1.581   0.282  H91     JI7  39  
JI7  H92     2H9     H   0  1  N  N  N  16.048   4.442  57.713  -0.614  -0.009   0.966  H92     JI7  40  
JI7  H101    1H10    H   0  0  N  N  N  16.299   5.054  55.577  -1.319   1.117  -1.128  H101    JI7  41  
JI7  H102    2H10    H   0  0  N  N  N  17.439   3.659  55.358  -1.801  -0.454  -1.811  H102    JI7  42  
JI7  HN11    HN11    H   0  0  N  N  N  18.929   5.528  56.515  -2.926   0.714   0.650  HN11    JI7  43  
JI7  H121    1H12    H   0  0  N  N  N  18.483   5.087  53.664  -3.612   1.916  -1.348  H121    JI7  44  
JI7  H122    2H12    H   0  0  N  N  N  19.560   4.110  54.774  -4.094   0.345  -2.031  H122    JI7  45  
JI7  H25     H25     H   0  1  N  N  N  21.867   4.527  54.503  -4.858   2.909   0.484  H25     JI7  46  
JI7  H24     H24     H   0  1  N  N  N  23.757   6.076  53.969  -7.027   3.075   1.635  H24     JI7  47  
JI7  H23     H23     H   0  1  N  N  N  23.296   8.471  53.405  -8.691   1.276   1.393  H23     JI7  48  
JI7  H21     H21     H   0  1  N  N  N  19.042   7.771  53.933  -6.015  -0.853  -1.159  H21     JI7  49  
JI7  H81     1H8     H   0  1  N  N  N  10.332   1.255  62.338   6.619   3.921  -1.398  H81     JI7  50  
JI7  H82     2H8     H   0  1  N  N  N  11.157   2.757  61.799   6.163   4.302   0.280  H82     JI7  51  
JI7  H83     3H8     H   0  1  N  N  N   9.508   2.371  61.198   7.842   3.855  -0.107  H83     JI7  52  
JI7  HN61    1HN6    H   0  0  N  N  N  10.588  -2.029  57.493   7.814  -2.003  -0.007  HN61    JI7  53  
JI7  HN62    2HN6    H   0  0  N  N  N  11.351  -2.695  58.773   8.951  -0.843  -0.435  HN62    JI7  54  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JI7  CL     C22     SING  N  N   1  
JI7  C22    C23     DOUB  Y  N   2  
JI7  C22    C21     SING  Y  N   3  
JI7  C23    C24     SING  Y  N   4  
JI7  C21    C26     DOUB  Y  N   5  
JI7  C24    C25     DOUB  Y  N   6  
JI7  C26    C25     SING  Y  N   7  
JI7  C26    C12     SING  N  N   8  
JI7  C12    N11     SING  N  N   9  
JI7  N11    C10     SING  N  N  10  
JI7  C10    C9      SING  N  N  11  
JI7  "C2'"  "N1'"   SING  N  N  12  
JI7  "C2'"  "C3'"   SING  N  N  13  
JI7  "N1'"  "C5'"   SING  N  N  14  
JI7  "C3'"  N8      SING  N  N  15  
JI7  "C3'"  "C4'"   SING  N  N  16  
JI7  C9     N8      SING  N  N  17  
JI7  C7     "C4'"   SING  N  N  18  
JI7  C7     C2      SING  N  N  19  
JI7  N1     C2      DOUB  Y  N  20  
JI7  N1     C6      SING  Y  N  21  
JI7  "C4'"  "C5'"   SING  N  N  22  
JI7  N6     C6      SING  N  N  23  
JI7  C2     C3      SING  Y  N  24  
JI7  C6     C5      DOUB  Y  N  25  
JI7  C3     C4      DOUB  Y  N  26  
JI7  C5     C4      SING  Y  N  27  
JI7  C4     C8      SING  N  N  28  
JI7  C5     H5      SING  N  N  29  
JI7  C3     H3      SING  N  N  30  
JI7  C7     H71     SING  N  N  31  
JI7  C7     H72     SING  N  N  32  
JI7  "C4'"  "H4'"   SING  N  N  33  
JI7  "C3'"  "H3'"   SING  N  N  34  
JI7  "C2'"  "H2'1"  SING  N  N  35  
JI7  "C2'"  "H2'2"  SING  N  N  36  
JI7  "N1'"  "HN1'"  SING  N  N  37  
JI7  "C5'"  "H5'1"  SING  N  N  38  
JI7  "C5'"  "H5'2"  SING  N  N  39  
JI7  N8     HN8     SING  N  N  40  
JI7  C9     H91     SING  N  N  41  
JI7  C9     H92     SING  N  N  42  
JI7  C10    H101    SING  N  N  43  
JI7  C10    H102    SING  N  N  44  
JI7  N11    HN11    SING  N  N  45  
JI7  C12    H121    SING  N  N  46  
JI7  C12    H122    SING  N  N  47  
JI7  C25    H25     SING  N  N  48  
JI7  C24    H24     SING  N  N  49  
JI7  C23    H23     SING  N  N  50  
JI7  C21    H21     SING  N  N  51  
JI7  C8     H81     SING  N  N  52  
JI7  C8     H82     SING  N  N  53  
JI7  C8     H83     SING  N  N  54  
JI7  N6     HN61    SING  N  N  55  
JI7  N6     HN62    SING  N  N  56  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JI7  SMILES            ACDLabs               10.04  "Clc1cccc(c1)CNCCNC2C(CNC2)Cc3nc(N)cc(c3)C"  
JI7  SMILES_CANONICAL  CACTVS                3.341  "Cc1cc(N)nc(C[C@H]2CNC[C@@H]2NCCNCc3cccc(Cl)c3)c1"  
JI7  SMILES            CACTVS                3.341  "Cc1cc(N)nc(C[CH]2CNC[CH]2NCCNCc3cccc(Cl)c3)c1"  
JI7  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "Cc1cc(nc(c1)N)C[C@H]2CNC[C@@H]2NCCNCc3cccc(c3)Cl"  
JI7  SMILES            "OpenEye OEToolkits"  1.5.0  "Cc1cc(nc(c1)N)CC2CNCC2NCCNCc3cccc(c3)Cl"  
JI7  InChI             InChI                 1.03   "InChI=1S/C20H28ClN5/c1-14-7-18(26-20(22)8-14)10-16-12-24-13-19(16)25-6-5-23-11-15-3-2-4-17(21)9-15/h2-4,7-9,16,19,23-25H,5-6,10-13H2,1H3,(H2,22,26)/t16-,19-/m0/s1"  
JI7  InChIKey          InChI                 1.03   VWCMAGONQJHIJZ-LPHOPBHVSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
JI7  "SYSTEMATIC NAME"  ACDLabs               10.04  "N-{(3R,4S)-4-[(6-amino-4-methylpyridin-2-yl)methyl]pyrrolidin-3-yl}-N'-(3-chlorobenzyl)ethane-1,2-diamine"  
JI7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "N-[(3R,4S)-4-[(6-amino-4-methyl-pyridin-2-yl)methyl]pyrrolidin-3-yl]-N'-[(3-chlorophenyl)methyl]ethane-1,2-diamine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JI7  "Create component"      2007-10-23  RCSB  
JI7  "Modify aromatic_flag"  2011-06-04  RCSB  
JI7  "Modify descriptor"     2011-06-04  RCSB  
JI7  "Modify synonyms"       2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     JI7
_pdbx_chem_comp_synonyms.name        
;(+-)-N1-{trans-4'-[(6"-amino-4"-methylpyridin-2"-yl)methyl]pyrrolidin-3'-yl}-N2-(3'-chlorobenzyl)ethane-1,2-diamine
;

_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
