data_IK7
# 
_chem_comp.id                                    IK7 
_chem_comp.name                                  Ridinilazole 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H16 N6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "2-pyridin-4-yl-5-(2-pyridin-4-yl-1H-benzimidazol-5-yl)-1H-benzimidazole" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-03-25 
_chem_comp.pdbx_modified_date                    2023-03-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        388.424 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     IK7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7Z9P 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IK7 N1  N1  N 0 1 Y N N -17.817 -12.912 -10.090 4.646  1.454  0.004  N1  IK7 1  
IK7 N3  N2  N 0 1 Y N N -29.271 -5.259  -6.790  -9.372 0.536  0.001  N3  IK7 2  
IK7 C5  C1  C 0 1 Y N N -18.807 -11.947 -10.251 3.278  1.270  0.003  C5  IK7 3  
IK7 C6  C2  C 0 1 Y N N -18.882 -10.855 -11.113 2.192  2.137  0.001  C6  IK7 4  
IK7 C7  C3  C 0 1 Y N N -19.995 -10.049 -11.054 0.919  1.642  -0.000 C7  IK7 5  
IK7 C8  C4  C 0 1 Y N N -21.067 -10.295 -10.159 0.695  0.261  0.001  C8  IK7 6  
IK7 C10 C5  C 0 1 Y N N -22.746 -8.817  -11.331 -0.919 -1.642 0.002  C10 IK7 7  
IK7 C13 C6  C 0 1 Y N N -26.079 -7.382  -8.707  -5.222 -0.212 0.002  C13 IK7 8  
IK7 C15 C7  C 0 1 Y N N -28.243 -6.139  -8.768  -7.173 1.359  -0.003 C15 IK7 9  
IK7 C17 C8  C 0 1 Y N N -28.262 -5.780  -6.095  -8.948 -0.713 0.005  C17 IK7 10 
IK7 C20 C9  C 0 1 Y N N -23.062 -9.288  -8.985  -1.765 0.621  -0.001 C20 IK7 11 
IK7 C21 C10 C 0 1 Y N N -20.983 -11.406 -9.324  1.765  -0.621 0.004  C21 IK7 12 
IK7 C22 C11 C 0 1 Y N N -19.854 -12.204 -9.366  3.070  -0.122 0.005  C22 IK7 13 
IK7 C24 C12 C 0 1 Y N N -17.662 -17.149 -7.726  8.948  0.713  -0.005 C24 IK7 14 
IK7 C23 C13 C 0 1 Y N N -18.317 -16.015 -8.168  7.599  1.003  -0.003 C23 IK7 15 
IK7 C2  C14 C 0 1 Y N N -16.205 -15.081 -8.680  7.173  -1.359 0.005  C2  IK7 16 
IK7 C1  C15 C 0 1 Y N N -15.636 -16.244 -8.204  8.538  -1.558 -0.004 C1  IK7 17 
IK7 C19 C16 C 0 1 Y N N -24.211 -8.512  -9.025  -3.070 0.122  -0.001 C19 IK7 18 
IK7 C16 C17 C 0 1 Y N N -29.245 -5.445  -8.113  -8.539 1.558  -0.004 C16 IK7 19 
IK7 C12 C18 C 0 1 Y N N -24.619 -7.891  -10.209 -3.278 -1.270 -0.010 C12 IK7 20 
IK7 C14 C19 C 0 1 Y N N -27.222 -6.717  -8.031  -6.678 0.050  0.002  C14 IK7 21 
IK7 C18 C20 C 0 1 Y N N -27.221 -6.494  -6.664  -7.599 -1.003 0.005  C18 IK7 22 
IK7 C9  C21 C 0 1 Y N N -22.297 -9.442  -10.145 -0.695 -0.261 0.001  C9  IK7 23 
IK7 C11 C22 C 0 1 Y N N -23.881 -8.047  -11.379 -2.192 -2.137 -0.003 C11 IK7 24 
IK7 C3  C23 C 0 1 Y N N -17.579 -14.935 -8.628  6.678  -0.051 0.002  C3  IK7 25 
IK7 C4  C24 C 0 1 Y N N -18.266 -13.710 -9.123  5.222  0.212  0.006  C4  IK7 26 
IK7 N2  N3  N 0 1 Y N N -25.776 -7.165  -9.980  -4.646 -1.454 -0.008 N2  IK7 27 
IK7 N4  N4  N 0 1 Y N N -25.152 -8.153  -8.075  -4.291 0.709  -0.003 N4  IK7 28 
IK7 N5  N5  N 0 1 Y N N -19.483 -13.331 -8.664  4.291  -0.709 0.007  N5  IK7 29 
IK7 N6  N6  N 0 1 Y N N -16.337 -17.283 -7.733  9.372  -0.536 -0.009 N6  IK7 30 
IK7 H1  H1  H 0 1 N N N -16.955 -12.989 -10.592 5.113  2.304  -0.001 H1  IK7 31 
IK7 H2  H2  H 0 1 N N N -18.085 -10.646 -11.811 2.355  3.205  -0.000 H2  IK7 32 
IK7 H3  H3  H 0 1 N N N -20.055 -9.196  -11.714 0.080  2.321  -0.002 H3  IK7 33 
IK7 H4  H4  H 0 1 N N N -22.172 -8.951  -12.236 -0.080 -2.321 0.003  H4  IK7 34 
IK7 H5  H5  H 0 1 N N N -28.257 -6.229  -9.844  -6.496 2.201  -0.007 H5  IK7 35 
IK7 H6  H6  H 0 1 N N N -28.255 -5.637  -5.024  -9.666 -1.519 0.008  H6  IK7 36 
IK7 H7  H7  H 0 1 N N N -22.761 -9.769  -8.066  -1.590 1.687  -0.002 H7  IK7 37 
IK7 H8  H8  H 0 1 N N N -21.792 -11.643 -8.649  1.590  -1.687 0.005  H8  IK7 38 
IK7 H9  H9  H 0 1 N N N -18.257 -17.971 -7.355  9.666  1.519  -0.010 H9  IK7 39 
IK7 H10 H10 H 0 1 N N N -19.396 -15.970 -8.155  7.259  2.028  -0.005 H10 IK7 40 
IK7 H11 H11 H 0 1 N N N -15.586 -14.295 -9.088  6.496  -2.201 0.009  H11 IK7 41 
IK7 H12 H12 H 0 1 N N N -14.559 -16.321 -8.212  8.930  -2.565 -0.002 H12 IK7 42 
IK7 H13 H13 H 0 1 N N N -30.050 -5.031  -8.703  -8.930 2.565  -0.008 H13 IK7 43 
IK7 H14 H14 H 0 1 N N N -26.418 -6.873  -6.049  -7.259 -2.028 0.010  H14 IK7 44 
IK7 H15 H15 H 0 1 N N N -24.193 -7.575  -12.299 -2.355 -3.205 -0.002 H15 IK7 45 
IK7 H16 H16 H 0 1 N N N -26.276 -6.598  -10.635 -5.113 -2.304 -0.012 H16 IK7 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IK7 C11 C10 DOUB Y N 1  
IK7 C11 C12 SING Y N 2  
IK7 C10 C9  SING Y N 3  
IK7 C6  C7  DOUB Y N 4  
IK7 C6  C5  SING Y N 5  
IK7 C7  C8  SING Y N 6  
IK7 C5  N1  SING Y N 7  
IK7 C5  C22 DOUB Y N 8  
IK7 C12 N2  SING Y N 9  
IK7 C12 C19 DOUB Y N 10 
IK7 C8  C9  SING N N 11 
IK7 C8  C21 DOUB Y N 12 
IK7 C9  C20 DOUB Y N 13 
IK7 N1  C4  SING Y N 14 
IK7 N2  C13 SING Y N 15 
IK7 C22 C21 SING Y N 16 
IK7 C22 N5  SING Y N 17 
IK7 C4  N5  DOUB Y N 18 
IK7 C4  C3  SING N N 19 
IK7 C19 C20 SING Y N 20 
IK7 C19 N4  SING Y N 21 
IK7 C15 C16 DOUB Y N 22 
IK7 C15 C14 SING Y N 23 
IK7 C13 N4  DOUB Y N 24 
IK7 C13 C14 SING N N 25 
IK7 C2  C3  DOUB Y N 26 
IK7 C2  C1  SING Y N 27 
IK7 C3  C23 SING Y N 28 
IK7 C1  N6  DOUB Y N 29 
IK7 C23 C24 DOUB Y N 30 
IK7 C16 N3  SING Y N 31 
IK7 C14 C18 DOUB Y N 32 
IK7 N6  C24 SING Y N 33 
IK7 N3  C17 DOUB Y N 34 
IK7 C18 C17 SING Y N 35 
IK7 N1  H1  SING N N 36 
IK7 C6  H2  SING N N 37 
IK7 C7  H3  SING N N 38 
IK7 C10 H4  SING N N 39 
IK7 C15 H5  SING N N 40 
IK7 C17 H6  SING N N 41 
IK7 C20 H7  SING N N 42 
IK7 C21 H8  SING N N 43 
IK7 C24 H9  SING N N 44 
IK7 C23 H10 SING N N 45 
IK7 C2  H11 SING N N 46 
IK7 C1  H12 SING N N 47 
IK7 C16 H13 SING N N 48 
IK7 C18 H14 SING N N 49 
IK7 C11 H15 SING N N 50 
IK7 N2  H16 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IK7 InChI            InChI                1.06  "InChI=1S/C24H16N6/c1-3-19-21(29-23(27-19)15-5-9-25-10-6-15)13-17(1)18-2-4-20-22(14-18)30-24(28-20)16-7-11-26-12-8-16/h1-14H,(H,27,29)(H,28,30)" 
IK7 InChIKey         InChI                1.06  UHQFBTAJFNVZIV-UHFFFAOYSA-N                                                                                                                      
IK7 SMILES_CANONICAL CACTVS               3.385 "[nH]1c2ccc(cc2nc1c3ccncc3)c4ccc5[nH]c(nc5c4)c6ccncc6"                                                                                           
IK7 SMILES           CACTVS               3.385 "[nH]1c2ccc(cc2nc1c3ccncc3)c4ccc5[nH]c(nc5c4)c6ccncc6"                                                                                           
IK7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1c3ccc4c(c3)nc([nH]4)c5ccncc5)nc([nH]2)c6ccncc6"                                                                                       
IK7 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1c3ccc4c(c3)nc([nH]4)c5ccncc5)nc([nH]2)c6ccncc6"                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           IK7 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-pyridin-4-yl-5-(2-pyridin-4-yl-1~{H}-benzimidazol-5-yl)-1~{H}-benzimidazole" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      IK7 
_pdbx_chem_comp_synonyms.name         "2-pyridin-4-yl-5-(2-pyridin-4-yl-1H-benzimidazol-5-yl)-1H-benzimidazole" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IK7 "Create component"  2022-03-25 PDBE 
IK7 "Modify descriptor" 2022-08-22 RCSB 
IK7 "Initial release"   2023-03-29 RCSB 
# 
