data_GJ7
# 
_chem_comp.id                                    GJ7 
_chem_comp.name                                  "2-(4-phenoxyphenoxy)-6-[(1S,4S)-5-propanoyl-2,5-diazabicyclo[2.2.1]heptan-2-yl]pyridine-3-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H26 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-05-23 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        458.509 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GJ7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6DI5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GJ7 C1  C1  C 0 1 N N N N N N -12.782 13.726 0.770  4.536  2.615  -3.383 C1  GJ7 1  
GJ7 C2  C2  C 0 1 N N N N N N -12.867 12.639 1.918  3.439  2.194  -2.402 C2  GJ7 2  
GJ7 C7  C3  C 0 1 N N S N N N -12.066 8.756  1.832  3.194  2.756  1.452  C7  GJ7 3  
GJ7 C9  C4  C 0 1 N N N N N N -13.745 9.881  3.091  1.691  1.668  -0.032 C9  GJ7 4  
GJ7 C10 C5  C 0 1 N N S N N N -13.753 8.347  3.280  1.150  1.697  1.431  C10 GJ7 5  
GJ7 C12 C6  C 0 1 Y N N N N N -20.693 7.527  8.890  -5.325 1.318  0.923  C12 GJ7 6  
GJ7 C13 C7  C 0 1 Y N N N N N -21.855 8.181  9.424  -6.490 1.108  1.634  C13 GJ7 7  
GJ7 C14 C8  C 0 1 Y N N N N N -21.867 8.608  10.767 -7.594 0.557  1.009  C14 GJ7 8  
GJ7 C15 C9  C 0 1 Y N N N N N -20.737 8.358  11.564 -7.534 0.216  -0.330 C15 GJ7 9  
GJ7 C16 C10 C 0 1 Y N N N N N -19.609 7.706  11.025 -6.371 0.424  -1.046 C16 GJ7 10 
GJ7 C19 C11 C 0 1 Y N N N N N -17.871 7.098  5.514  -2.211 -1.675 0.077  C19 GJ7 11 
GJ7 C20 C12 C 0 1 Y N N N N N -17.981 7.382  6.897  -3.239 -0.765 -0.076 C20 GJ7 12 
GJ7 C21 C13 C 0 1 Y N N N N N -18.287 6.377  7.828  -3.106 0.287  -0.972 C21 GJ7 13 
GJ7 C22 C14 C 0 1 Y N N N N N -18.453 5.059  7.375  -1.942 0.424  -1.713 C22 GJ7 14 
GJ7 C24 C15 C 0 1 Y N N N N N -18.040 5.788  5.067  -1.045 -1.535 -0.661 C24 GJ7 15 
GJ7 N25 N1  N 0 1 N N N N N N -20.091 4.862  1.886  3.204  -5.049 -0.232 N25 GJ7 16 
GJ7 C27 C16 C 0 1 N N N N N N -18.973 4.822  1.012  2.140  -4.229 -0.344 C27 GJ7 17 
GJ7 O28 O1  O 0 1 N N N N N N -18.043 5.484  3.702  -0.034 -2.431 -0.511 O28 GJ7 18 
GJ7 C30 C17 C 0 1 Y N N N N N -15.687 6.676  0.459  3.214  -1.291 1.700  C30 GJ7 19 
GJ7 C31 C18 C 0 1 Y N N N N N -16.871 5.965  0.212  3.252  -2.516 1.091  C31 GJ7 20 
GJ7 C32 C19 C 0 1 Y N N N N N -17.680 5.572  1.286  2.145  -2.921 0.329  C32 GJ7 21 
GJ7 C33 C20 C 0 1 Y N N N N N -17.250 5.948  2.659  1.043  -2.058 0.220  C33 GJ7 22 
GJ7 O3  O2  O 0 1 N N N N N N -11.377 11.297 0.691  4.845  3.245  -0.825 O3  GJ7 23 
GJ7 C4  C21 C 0 1 N N N N N N -12.248 11.271 1.547  3.808  2.645  -1.013 C4  GJ7 24 
GJ7 C5  C22 C 0 1 N N N N N N -12.251 8.077  3.171  1.724  3.083  1.896  C5  GJ7 25 
GJ7 C6  C23 C 0 1 N N N N N N -13.153 8.107  0.973  3.389  1.388  2.177  C6  GJ7 26 
GJ7 N8  N2  N 0 1 N N N N N N -12.649 10.095 2.125  2.984  2.383  0.022  N8  GJ7 27 
GJ7 N11 N3  N 0 1 N N N N N N -14.148 7.782  2.006  2.048  0.754  2.170  N11 GJ7 28 
GJ7 C17 C24 C 0 1 Y N N N N N -19.562 7.286  9.690  -5.262 0.976  -0.420 C17 GJ7 29 
GJ7 O18 O3  O 0 1 N N N N N N -18.399 6.664  9.212  -4.117 1.183  -1.123 O18 GJ7 30 
GJ7 C23 C25 C 0 1 Y N N N N N -18.347 4.771  5.989  -0.914 -0.487 -1.560 C23 GJ7 31 
GJ7 O26 O4  O 0 1 N N N N N N -19.043 4.201  -0.087 1.176  -4.571 -1.002 O26 GJ7 32 
GJ7 C29 C26 C 0 1 Y N N N N N -15.328 7.026  1.779  2.088  -0.483 1.549  C29 GJ7 33 
GJ7 N34 N4  N 0 1 Y N N N N N -16.098 6.655  2.855  1.052  -0.883 0.826  N34 GJ7 34 
GJ7 H1  H1  H 0 1 N N N N N N -13.243 14.663 1.116  4.638  3.700  -3.369 H1  GJ7 35 
GJ7 H2  H2  H 0 1 N N N N N N -11.728 13.909 0.515  5.481  2.157  -3.090 H2  GJ7 36 
GJ7 H3  H3  H 0 1 N N N N N N -13.316 13.362 -0.120 4.269  2.288  -4.388 H3  GJ7 37 
GJ7 H4  H4  H 0 1 N N N N N N -12.338 13.028 2.801  2.495  2.652  -2.695 H4  GJ7 38 
GJ7 H5  H5  H 0 1 N N N N N N -13.927 12.482 2.165  3.337  1.109  -2.416 H5  GJ7 39 
GJ7 H6  H6  H 0 1 N N N N N N -11.049 8.740  1.414  3.942  3.525  1.643  H6  GJ7 40 
GJ7 H7  H7  H 0 1 N N N N N N -13.539 10.395 4.042  1.840  0.640  -0.360 H7  GJ7 41 
GJ7 H8  H8  H 0 1 N N N N N N -14.704 10.233 2.684  1.000  2.182  -0.700 H8  GJ7 42 
GJ7 H9  H9  H 0 1 N N N N N N -14.252 7.974  4.187  0.077  1.549  1.552  H9  GJ7 43 
GJ7 H10 H10 H 0 1 N N N N N N -20.688 7.215  7.856  -4.465 1.752  1.411  H10 GJ7 44 
GJ7 H11 H11 H 0 1 N N N N N N -22.719 8.345  8.797  -6.539 1.373  2.680  H11 GJ7 45 
GJ7 H12 H12 H 0 1 N N N N N N -22.727 9.117  11.175 -8.504 0.394  1.567  H12 GJ7 46 
GJ7 H13 H13 H 0 1 N N N N N N -20.732 8.668  12.599 -8.397 -0.215 -0.816 H13 GJ7 47 
GJ7 H14 H14 H 0 1 N N N N N N -18.755 7.525  11.661 -6.325 0.157  -2.091 H14 GJ7 48 
GJ7 H15 H15 H 0 1 N N N N N N -17.658 7.890  4.811  -2.314 -2.493 0.774  H15 GJ7 49 
GJ7 H16 H16 H 0 1 N N N N N N -17.826 8.393  7.243  -4.145 -0.872 0.501  H16 GJ7 50 
GJ7 H17 H17 H 0 1 N N N N N N -18.661 4.266  8.079  -1.839 1.242  -2.411 H17 GJ7 51 
GJ7 H18 H18 H 0 1 N N N N N N -20.940 4.397  1.634  3.973  -4.777 0.293  H18 GJ7 52 
GJ7 H19 H19 H 0 1 N N N N N N -20.030 5.355  2.754  3.201  -5.912 -0.676 H19 GJ7 53 
GJ7 H20 H20 H 0 1 N N N N N N -15.047 6.957  -0.364 4.049  -0.953 2.296  H20 GJ7 54 
GJ7 H21 H21 H 0 1 N N N N N N -17.157 5.722  -0.801 4.115  -3.157 1.194  H21 GJ7 55 
GJ7 H22 H22 H 0 1 N N N N N N -12.013 7.003  3.140  1.638  3.227  2.973  H22 GJ7 56 
GJ7 H23 H23 H 0 1 N N N N N N -11.673 8.557  3.975  1.298  3.916  1.337  H23 GJ7 57 
GJ7 H24 H24 H 0 1 N N N N N N -13.555 8.809  0.227  4.103  0.770  1.634  H24 GJ7 58 
GJ7 H25 H25 H 0 1 N N N N N N -12.784 7.204  0.465  3.727  1.547  3.201  H25 GJ7 59 
GJ7 H26 H26 H 0 1 N N N N N N -18.504 3.761  5.639  -0.007 -0.378 -2.135 H26 GJ7 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GJ7 O26 C27 DOUB N N 1  
GJ7 C31 C30 DOUB Y N 2  
GJ7 C31 C32 SING Y N 3  
GJ7 C30 C29 SING Y N 4  
GJ7 O3  C4  DOUB N N 5  
GJ7 C1  C2  SING N N 6  
GJ7 C6  C7  SING N N 7  
GJ7 C6  N11 SING N N 8  
GJ7 C27 C32 SING N N 9  
GJ7 C27 N25 SING N N 10 
GJ7 C32 C33 DOUB Y N 11 
GJ7 C4  C2  SING N N 12 
GJ7 C4  N8  SING N N 13 
GJ7 C29 N11 SING N N 14 
GJ7 C29 N34 DOUB Y N 15 
GJ7 C7  N8  SING N N 16 
GJ7 C7  C5  SING N N 17 
GJ7 N11 C10 SING N N 18 
GJ7 N8  C9  SING N N 19 
GJ7 C33 N34 SING Y N 20 
GJ7 C33 O28 SING N N 21 
GJ7 C9  C10 SING N N 22 
GJ7 C5  C10 SING N N 23 
GJ7 O28 C24 SING N N 24 
GJ7 C24 C19 DOUB Y N 25 
GJ7 C24 C23 SING Y N 26 
GJ7 C19 C20 SING Y N 27 
GJ7 C23 C22 DOUB Y N 28 
GJ7 C20 C21 DOUB Y N 29 
GJ7 C22 C21 SING Y N 30 
GJ7 C21 O18 SING N N 31 
GJ7 C12 C13 DOUB Y N 32 
GJ7 C12 C17 SING Y N 33 
GJ7 O18 C17 SING N N 34 
GJ7 C13 C14 SING Y N 35 
GJ7 C17 C16 DOUB Y N 36 
GJ7 C14 C15 DOUB Y N 37 
GJ7 C16 C15 SING Y N 38 
GJ7 C1  H1  SING N N 39 
GJ7 C1  H2  SING N N 40 
GJ7 C1  H3  SING N N 41 
GJ7 C2  H4  SING N N 42 
GJ7 C2  H5  SING N N 43 
GJ7 C7  H6  SING N N 44 
GJ7 C9  H7  SING N N 45 
GJ7 C9  H8  SING N N 46 
GJ7 C10 H9  SING N N 47 
GJ7 C12 H10 SING N N 48 
GJ7 C13 H11 SING N N 49 
GJ7 C14 H12 SING N N 50 
GJ7 C15 H13 SING N N 51 
GJ7 C16 H14 SING N N 52 
GJ7 C19 H15 SING N N 53 
GJ7 C20 H16 SING N N 54 
GJ7 C22 H17 SING N N 55 
GJ7 N25 H18 SING N N 56 
GJ7 N25 H19 SING N N 57 
GJ7 C30 H20 SING N N 58 
GJ7 C31 H21 SING N N 59 
GJ7 C5  H22 SING N N 60 
GJ7 C5  H23 SING N N 61 
GJ7 C6  H24 SING N N 62 
GJ7 C6  H25 SING N N 63 
GJ7 C23 H26 SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GJ7 SMILES           ACDLabs              12.01 "CCC(=O)N1C2CC(C1)N(C2)c5ccc(C(N)=O)c(Oc4ccc(Oc3ccccc3)cc4)n5"                                                                                                                          
GJ7 InChI            InChI                1.03  "InChI=1S/C26H26N4O4/c1-2-24(31)30-16-17-14-18(30)15-29(17)23-13-12-22(25(27)32)26(28-23)34-21-10-8-20(9-11-21)33-19-6-4-3-5-7-19/h3-13,17-18H,2,14-16H2,1H3,(H2,27,32)/t17-,18-/m0/s1" 
GJ7 InChIKey         InChI                1.03  DQFJRLJIIQKNPY-ROUUACIJSA-N                                                                                                                                                             
GJ7 SMILES_CANONICAL CACTVS               3.385 "CCC(=O)N1C[C@@H]2C[C@H]1CN2c3ccc(C(N)=O)c(Oc4ccc(Oc5ccccc5)cc4)n3"                                                                                                                     
GJ7 SMILES           CACTVS               3.385 "CCC(=O)N1C[CH]2C[CH]1CN2c3ccc(C(N)=O)c(Oc4ccc(Oc5ccccc5)cc4)n3"                                                                                                                        
GJ7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC(=O)N1C[C@@H]2C[C@H]1CN2c3ccc(c(n3)Oc4ccc(cc4)Oc5ccccc5)C(=O)N"                                                                                                                     
GJ7 SMILES           "OpenEye OEToolkits" 2.0.6 "CCC(=O)N1CC2CC1CN2c3ccc(c(n3)Oc4ccc(cc4)Oc5ccccc5)C(=O)N"                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GJ7 "SYSTEMATIC NAME" ACDLabs              12.01 "2-(4-phenoxyphenoxy)-6-[(1S,4S)-5-propanoyl-2,5-diazabicyclo[2.2.1]heptan-2-yl]pyridine-3-carboxamide"       
GJ7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-(4-phenoxyphenoxy)-6-[(1~{S},4~{S})-5-propanoyl-2,5-diazabicyclo[2.2.1]heptan-2-yl]pyridine-3-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GJ7 "Create component" 2018-05-23 RCSB 
GJ7 "Initial release"  2018-09-05 RCSB 
GJ7 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            GJ7 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
