data_AG7
# 
_chem_comp.id                                    AG7 
_chem_comp.name                                  "4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C31 H41 F N4 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "RUPINTRIVIR, bound form" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-08-20 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        600.678 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     AG7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1CQQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
AG7 C01  C01  C 0 1 N N N N N N 5.449  -7.252  27.623 -1.977 1.931  0.201  C01  AG7 1  
AG7 C02  C02  C 0 1 N N N N N N 4.584  -6.612  28.720 -1.106 1.012  -0.615 C02  AG7 2  
AG7 O03  O03  O 0 1 N N N N N N 6.671  -7.218  27.705 -1.531 2.470  1.186  O03  AG7 3  
AG7 C04  C04  C 0 1 N N R N N N 5.449  -6.074  29.867 0.283  0.927  0.021  C04  AG7 4  
AG7 C05  C05  C 0 1 N N N N N N 4.530  -5.245  30.762 0.175  0.266  1.397  C05  AG7 5  
AG7 C06  C06  C 0 1 Y N N N N N 4.311  -3.968  30.102 1.511  0.327  2.090  C06  AG7 6  
AG7 C07  C07  C 0 1 Y N N N N N 5.396  -3.118  29.843 1.879  1.465  2.784  C07  AG7 7  
AG7 C08  C08  C 0 1 Y N N N N N 5.190  -1.898  29.203 3.104  1.521  3.420  C08  AG7 8  
AG7 C09  C09  C 0 1 Y N N N N N 3.908  -1.529  28.807 3.964  0.438  3.362  C09  AG7 9  
AG7 C10  C10  C 0 1 Y N N N N N 2.839  -2.361  29.050 3.595  -0.701 2.667  C10  AG7 10 
AG7 C11  C11  C 0 1 Y N N N N N 3.046  -3.593  29.693 2.367  -0.758 2.036  C11  AG7 11 
AG7 N12  N12  N 0 1 N N N N N N 7.401  -7.112  30.965 2.527  0.224  -0.745 N12  AG7 12 
AG7 C13  C13  C 0 1 N N R N N N 8.049  -8.179  31.748 3.408  -0.481 -1.680 C13  AG7 13 
AG7 C14  C14  C 0 1 N N N N N N 9.130  -8.925  30.971 4.732  0.276  -1.804 C14  AG7 14 
AG7 C15  C15  C 0 1 N N S N N N 8.553  -9.766  29.821 4.488  1.620  -2.493 C15  AG7 15 
AG7 C16  C16  C 0 1 N N N N N N 9.598  -10.558 29.090 3.663  2.527  -1.608 C16  AG7 16 
AG7 N17  N17  N 0 1 N N N N N N 9.100  -11.614 28.529 4.453  3.445  -1.023 N17  AG7 17 
AG7 O18  O18  O 0 1 N N N N N N 10.793 -10.308 29.075 2.464  2.441  -1.449 O18  AG7 18 
AG7 C19  C19  C 0 1 N N N N N N 8.603  -7.623  33.105 3.675  -1.895 -1.160 C19  AG7 19 
AG7 C20  C20  C 0 1 N N N N N N 7.452  -7.217  34.069 2.376  -2.702 -1.185 C20  AG7 20 
AG7 C21  C21  C 0 1 N N N N N N 7.728  -7.687  35.522 2.633  -4.086 -0.646 C21  AG7 21 
AG7 O22  O22  O 0 1 N N N N N N 6.805  -7.329  36.388 1.630  -4.975 -0.574 O22  AG7 22 
AG7 O23  O23  O 0 1 N N N N N N 8.701  -8.357  35.821 3.743  -4.395 -0.280 O23  AG7 23 
AG7 C47  C47  C 0 1 N N N N N N 6.119  -7.194  30.649 1.190  0.107  -0.860 C47  AG7 24 
AG7 O48  O48  O 0 1 N N N N N N 5.499  -8.209  30.955 0.716  -0.658 -1.673 O48  AG7 25 
AG7 C50  C50  C 0 1 N N N N N N 6.872  -7.797  37.761 1.951  -6.289 -0.045 C50  AG7 26 
AG7 C53  C53  C 0 1 N N N N N N 5.462  -7.712  38.373 0.692  -7.158 -0.039 C53  AG7 27 
AG7 C57  C57  C 0 1 N N S N N N 4.728  -7.897  26.406 -3.404 2.183  -0.214 C57  AG7 28 
AG7 N58  N58  N 0 1 N N N N N N 5.664  -7.963  25.293 -4.227 1.024  0.140  N58  AG7 29 
AG7 C59  C59  C 0 1 N N N N N N 5.539  -7.195  24.238 -5.365 0.774  -0.538 C59  AG7 30 
AG7 O60  O60  O 0 1 N N N N N N 4.604  -6.414  24.222 -5.708 1.510  -1.442 O60  AG7 31 
AG7 C78  C78  C 0 1 N N N N N N 4.309  -9.372  26.606 -3.933 3.424  0.508  C78  AG7 32 
AG7 C81  C81  C 0 1 N N N N N N 3.069  -9.635  25.736 -3.134 4.651  0.065  C81  AG7 33 
AG7 F1   F1   F 0 1 N N N N N N 3.709  -0.352  28.231 5.163  0.492  3.983  F1   AG7 34 
AG7 C82  C82  C 0 1 N N N N N N 4.065  -9.871  28.036 -5.410 3.625  0.160  C82  AG7 35 
AG7 C83  C83  C 0 1 N N N N N N 7.753  -11.910 29.032 5.856  3.270  -1.418 C83  AG7 36 
AG7 C84  C84  C 0 1 N N N N N N 7.574  -10.892 30.188 5.821  2.381  -2.681 C84  AG7 37 
AG7 C1   C1   C 0 1 Y N N N N N 6.512  -7.288  23.249 -6.199 -0.400 -0.179 C1   AG7 38 
AG7 C2   C2   C 0 1 Y N N N N N 6.558  -6.365  22.213 -7.419 -0.800 -0.792 C2   AG7 39 
AG7 C3   C3   C 0 1 Y N N N N N 7.719  -6.730  21.526 -7.775 -1.914 -0.110 C3   AG7 40 
AG7 O4   O4   O 0 1 Y N N N N N 8.304  -7.776  22.114 -6.825 -2.119 0.813  O4   AG7 41 
AG7 N5   N5   N 0 1 Y N N N N N 7.529  -8.154  23.187 -5.957 -1.279 0.761  N5   AG7 42 
AG7 C4   C4   C 0 1 N N N N N N 8.294  -6.107  20.259 -9.001 -2.758 -0.343 C4   AG7 43 
AG7 H2   H2   H 0 1 N N N N N N 4.014  -5.779  28.283 -1.554 0.018  -0.644 H2   AG7 44 
AG7 H3   H3   H 0 1 N N N N N N 3.896  -7.372  29.119 -1.018 1.401  -1.630 H3   AG7 45 
AG7 H27  H27  H 0 1 N N N N N N 6.269  -5.459  29.469 0.694  1.931  0.131  H27  AG7 46 
AG7 H28  H28  H 0 1 N N N N N N 3.572  -5.766  30.906 -0.569 0.793  1.995  H28  AG7 47 
AG7 H29  H29  H 0 1 N N N N N N 5.000  -5.088  31.744 -0.126 -0.775 1.277  H29  AG7 48 
AG7 H30  H30  H 0 1 N N N N N N 6.393  -3.410  30.140 1.208  2.310  2.828  H30  AG7 49 
AG7 H31  H31  H 0 1 N N N N N N 6.025  -1.239  29.014 3.391  2.410  3.962  H31  AG7 50 
AG7 H33  H33  H 0 1 N N N N N N 1.845  -2.068  28.748 4.265  -1.547 2.621  H33  AG7 51 
AG7 H34  H34  H 0 1 N N N N N N 2.209  -4.252  29.869 2.077  -1.648 1.497  H34  AG7 52 
AG7 H49  H49  H 0 1 N N N N N N 7.935  -6.319  30.670 2.907  0.776  -0.043 H49  AG7 53 
AG7 H91  H91  H 0 1 N N N N N N 7.267  -8.921  31.968 2.929  -0.538 -2.657 H91  AG7 54 
AG7 H35  H35  H 0 1 N N N N N N 9.827  -8.187  30.547 5.146  0.447  -0.810 H35  AG7 55 
AG7 H36  H36  H 0 1 N N N N N N 9.657  -9.597  31.664 5.433  -0.314 -2.394 H36  AG7 56 
AG7 H94  H94  H 0 1 N N N N N N 8.062  -8.960  29.256 3.993  1.470  -3.453 H94  AG7 57 
AG7 H39  H39  H 0 1 N N N N N N 9.574  -12.160 27.839 4.136  4.133  -0.418 H39  AG7 58 
AG7 H191 H191 H 0 0 N N N N N N 9.209  -8.404  33.587 4.417  -2.381 -1.794 H191 AG7 59 
AG7 H192 H192 H 0 0 N N N N N N 9.221  -6.737  32.899 4.050  -1.842 -0.138 H192 AG7 60 
AG7 H41  H41  H 0 1 N N N N N N 7.357  -6.121  34.064 1.628  -2.205 -0.567 H41  AG7 61 
AG7 H42  H42  H 0 1 N N N N N N 6.518  -7.681  33.719 2.012  -2.773 -2.210 H42  AG7 62 
AG7 H51  H51  H 0 1 N N N N N N 7.226  -8.838  37.783 2.713  -6.756 -0.669 H51  AG7 63 
AG7 H52  H52  H 0 1 N N N N N N 7.567  -7.168  38.336 2.328  -6.188 0.973  H52  AG7 64 
AG7 H53  H53  H 0 1 N N N N N N 5.492  -8.063  39.415 -0.069 -6.690 0.586  H53  AG7 65 
AG7 H54  H54  H 0 1 N N N N N N 5.114  -6.669  38.348 0.315  -7.258 -1.056 H54  AG7 66 
AG7 H56  H56  H 0 1 N N N N N N 4.772  -8.343  37.794 0.933  -8.144 0.359  H56  AG7 67 
AG7 H77  H77  H 0 1 N N N N N N 3.836  -7.273  26.248 -3.446 2.344  -1.291 H77  AG7 68 
AG7 H61  H61  H 0 1 N N N N N N 6.423  -8.612  25.334 -3.954 0.437  0.862  H61  AG7 69 
AG7 H79  H79  H 0 1 N N N N N N 5.192  -9.954  26.305 -3.829 3.291  1.585  H79  AG7 70 
AG7 H82  H82  H 0 1 N N N N N N 2.749  -10.680 25.860 -3.298 4.828  -0.998 H82  AG7 71 
AG7 H84  H84  H 0 1 N N N N N N 2.255  -8.963  26.046 -3.461 5.522  0.633  H84  AG7 72 
AG7 H85  H85  H 0 1 N N N N N N 3.316  -9.450  24.680 -2.073 4.478  0.246  H85  AG7 73 
AG7 H86  H86  H 0 1 N N N N N N 3.776  -10.932 28.010 -5.979 2.751  0.475  H86  AG7 74 
AG7 H87  H87  H 0 1 N N N N N N 4.986  -9.756  28.626 -5.787 4.509  0.674  H87  AG7 75 
AG7 H88  H88  H 0 1 N N N N N N 3.258  -9.283  28.497 -5.515 3.758  -0.916 H88  AG7 76 
AG7 H89  H89  H 0 1 N N N N N N 6.990  -11.774 28.251 6.305  4.236  -1.649 H89  AG7 77 
AG7 H90  H90  H 0 1 N N N N N N 7.673  -12.947 29.390 6.412  2.774  -0.623 H90  AG7 78 
AG7 H92  H92  H 0 1 N N N N N N 7.818  -11.339 31.163 6.665  1.692  -2.696 H92  AG7 79 
AG7 H93  H93  H 0 1 N N N N N N 6.539  -10.525 30.248 5.799  2.989  -3.585 H93  AG7 80 
AG7 H8   H8   H 0 1 N N N N N N 5.868  -5.564  21.993 -7.940 -0.326 -1.610 H8   AG7 81 
AG7 H5   H5   H 0 1 N N N N N N 9.204  -6.650  19.963 -8.771 -3.539 -1.069 H5   AG7 82 
AG7 H6   H6   H 0 1 N N N N N N 7.551  -6.169  19.450 -9.312 -3.215 0.596  H6   AG7 83 
AG7 H7   H7   H 0 1 N N N N N N 8.542  -5.052  20.449 -9.806 -2.132 -0.727 H7   AG7 84 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
AG7 C01 C02  SING N N 1  
AG7 C01 O03  DOUB N N 2  
AG7 C01 C57  SING N N 3  
AG7 C02 C04  SING N N 4  
AG7 C02 H2   SING N N 5  
AG7 C02 H3   SING N N 6  
AG7 C04 C05  SING N N 7  
AG7 C04 C47  SING N N 8  
AG7 C04 H27  SING N N 9  
AG7 C05 C06  SING N N 10 
AG7 C05 H28  SING N N 11 
AG7 C05 H29  SING N N 12 
AG7 C06 C07  DOUB Y N 13 
AG7 C06 C11  SING Y N 14 
AG7 C07 C08  SING Y N 15 
AG7 C07 H30  SING N N 16 
AG7 C08 C09  DOUB Y N 17 
AG7 C08 H31  SING N N 18 
AG7 C09 C10  SING Y N 19 
AG7 C09 F1   SING N N 20 
AG7 C10 C11  DOUB Y N 21 
AG7 C10 H33  SING N N 22 
AG7 C11 H34  SING N N 23 
AG7 N12 C13  SING N N 24 
AG7 N12 C47  SING N N 25 
AG7 N12 H49  SING N N 26 
AG7 C13 C14  SING N N 27 
AG7 C13 C19  SING N N 28 
AG7 C13 H91  SING N N 29 
AG7 C14 C15  SING N N 30 
AG7 C14 H35  SING N N 31 
AG7 C14 H36  SING N N 32 
AG7 C15 C16  SING N N 33 
AG7 C15 C84  SING N N 34 
AG7 C15 H94  SING N N 35 
AG7 C16 N17  SING N N 36 
AG7 C16 O18  DOUB N N 37 
AG7 N17 C83  SING N N 38 
AG7 N17 H39  SING N N 39 
AG7 C19 C20  SING N N 40 
AG7 C19 H191 SING N N 41 
AG7 C19 H192 SING N N 42 
AG7 C20 C21  SING N N 43 
AG7 C20 H41  SING N N 44 
AG7 C20 H42  SING N N 45 
AG7 C21 O22  SING N N 46 
AG7 C21 O23  DOUB N N 47 
AG7 O22 C50  SING N N 48 
AG7 C47 O48  DOUB N N 49 
AG7 C50 C53  SING N N 50 
AG7 C50 H51  SING N N 51 
AG7 C50 H52  SING N N 52 
AG7 C53 H53  SING N N 53 
AG7 C53 H54  SING N N 54 
AG7 C53 H56  SING N N 55 
AG7 C57 N58  SING N N 56 
AG7 C57 C78  SING N N 57 
AG7 C57 H77  SING N N 58 
AG7 N58 C59  SING N N 59 
AG7 N58 H61  SING N N 60 
AG7 C59 O60  DOUB N N 61 
AG7 C59 C1   SING N N 62 
AG7 C78 C81  SING N N 63 
AG7 C78 C82  SING N N 64 
AG7 C78 H79  SING N N 65 
AG7 C81 H82  SING N N 66 
AG7 C81 H84  SING N N 67 
AG7 C81 H85  SING N N 68 
AG7 C82 H86  SING N N 69 
AG7 C82 H87  SING N N 70 
AG7 C82 H88  SING N N 71 
AG7 C83 C84  SING N N 72 
AG7 C83 H89  SING N N 73 
AG7 C83 H90  SING N N 74 
AG7 C84 H92  SING N N 75 
AG7 C84 H93  SING N N 76 
AG7 C1  C2   SING Y N 77 
AG7 C1  N5   DOUB Y N 78 
AG7 C2  C3   DOUB Y N 79 
AG7 C2  H8   SING N N 80 
AG7 C3  O4   SING Y N 81 
AG7 C3  C4   SING N N 82 
AG7 O4  N5   SING Y N 83 
AG7 C4  H5   SING N N 84 
AG7 C4  H6   SING N N 85 
AG7 C4  H7   SING N N 86 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
AG7 SMILES           ACDLabs              12.01 "O=C(NC(C(=O)CC(C(=O)NC(CC1C(=O)NCC1)CCC(=O)OCC)Cc2ccc(F)cc2)C(C)C)c3noc(c3)C"                                                                                                                                                                            
AG7 InChI            InChI                1.03  "InChI=1S/C31H41FN4O7/c1-5-42-27(38)11-10-24(16-21-12-13-33-29(21)39)34-30(40)22(15-20-6-8-23(32)9-7-20)17-26(37)28(18(2)3)35-31(41)25-14-19(4)43-36-25/h6-9,14,18,21-22,24,28H,5,10-13,15-17H2,1-4H3,(H,33,39)(H,34,40)(H,35,41)/t21-,22+,24+,28-/m0/s1" 
AG7 InChIKey         InChI                1.03  LMIUALQNZXJHOG-IFILWLFVSA-N                                                                                                                                                                                                                               
AG7 SMILES_CANONICAL CACTVS               3.370 "CCOC(=O)CC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@@H](CC(=O)[C@@H](NC(=O)c2cc(C)on2)C(C)C)Cc3ccc(F)cc3"                                                                                                                                                           
AG7 SMILES           CACTVS               3.370 "CCOC(=O)CC[CH](C[CH]1CCNC1=O)NC(=O)[CH](CC(=O)[CH](NC(=O)c2cc(C)on2)C(C)C)Cc3ccc(F)cc3"                                                                                                                                                                  
AG7 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "CCOC(=O)CC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](Cc2ccc(cc2)F)CC(=O)[C@H](C(C)C)NC(=O)c3cc(on3)C"                                                                                                                                                             
AG7 SMILES           "OpenEye OEToolkits" 1.7.2 "CCOC(=O)CCC(CC1CCNC1=O)NC(=O)C(Cc2ccc(cc2)F)CC(=O)C(C(C)C)NC(=O)c3cc(on3)C"                                                                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
AG7 "SYSTEMATIC NAME" ACDLabs              12.01 "ethyl (4R)-4-{[(2R,5S)-2-(4-fluorobenzyl)-6-methyl-5-{[(5-methyl-1,2-oxazol-3-yl)carbonyl]amino}-4-oxoheptanoyl]amino}-5-[(3S)-2-oxopyrrolidin-3-yl]pentanoate"                            
AG7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "ethyl (4R)-4-[[(2R,5S)-2-[(4-fluorophenyl)methyl]-6-methyl-5-[(5-methyl-1,2-oxazol-3-yl)carbonylamino]-4-oxidanylidene-heptanoyl]amino]-5-[(3S)-2-oxidanylidenepyrrolidin-3-yl]pentanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
AG7 "Create component"  1999-08-20 RCSB 
AG7 "Modify descriptor" 2011-06-04 RCSB 
AG7 "Modify synonyms"   2011-07-29 RCSB 
AG7 "Modify synonyms"   2021-03-13 RCSB 
AG7 "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      AG7 
_pdbx_chem_comp_synonyms.name         "RUPINTRIVIR, bound form" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            AG7 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
