data_A1LU7
# 
_chem_comp.id                                    A1LU7 
_chem_comp.name                                  "2-[(2~{R},5~{R},8~{S},11~{S})-8-(4-azanylbutyl)-11-(3-carbamimidamidopropyl)-3,6,9,12,15-pentakis(oxidanylidene)-5-(phenylmethyl)-1,4,7,10,13-pentazacyclopentadec-2-yl]ethanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H41 N9 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-12-15 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        603.671 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1LU7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8XFG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1LU7 C10 C1  C 0 1 Y N N N N N 162.152 138.219 204.199 -5.624 1.478  1.751  C10 A1LU7 1  
A1LU7 C15 C2  C 0 1 Y N N N N N 161.029 137.586 203.696 -6.650 1.100  2.597  C15 A1LU7 2  
A1LU7 C17 C3  C 0 1 N N N N N N 159.906 139.800 209.169 0.597  3.955  -0.593 C17 A1LU7 3  
A1LU7 C20 C4  C 0 1 Y N N N N N 160.418 136.586 204.431 -7.321 -0.089 2.382  C20 A1LU7 4  
A1LU7 C24 C5  C 0 1 N N N N N N 164.614 144.126 205.523 0.479  -3.080 -0.521 C24 A1LU7 5  
A1LU7 C26 C6  C 0 1 N N S N N N 161.070 144.508 207.744 3.006  0.179  -1.785 C26 A1LU7 6  
A1LU7 C28 C7  C 0 1 N N N N N N 164.077 145.221 206.421 1.967  -3.301 -0.627 C28 A1LU7 7  
A1LU7 C01 C8  C 0 1 N N R N N N 163.845 140.070 206.022 -2.824 0.538  0.292  C01 A1LU7 8  
A1LU7 C02 C9  C 0 1 N N N N N N 163.916 138.550 205.989 -4.154 1.080  -0.236 C02 A1LU7 9  
A1LU7 C03 C10 C 0 1 N N N N N N 162.486 140.566 206.510 -1.692 1.051  -0.560 C03 A1LU7 10 
A1LU7 N04 N1  N 0 1 N N N N N N 163.943 140.615 204.691 -2.824 -0.946 0.221  N04 A1LU7 11 
A1LU7 C05 C11 C 0 1 Y N N N N N 162.671 137.862 205.431 -5.269 0.666  0.690  C05 A1LU7 12 
A1LU7 N06 N2  N 0 1 N N N N N N 161.808 139.999 207.661 -0.954 2.108  -0.115 N06 A1LU7 13 
A1LU7 O07 O1  O 0 1 N N N N N N 161.960 141.444 205.915 -1.440 0.531  -1.626 O07 A1LU7 14 
A1LU7 C08 C12 C 0 1 N N N N N N 164.957 141.549 204.261 -1.709 -1.532 0.761  C08 A1LU7 15 
A1LU7 C09 C13 C 0 1 Y N N N N N 162.058 136.860 206.165 -5.935 -0.527 0.479  C09 A1LU7 16 
A1LU7 C11 C14 C 0 1 N N S N N N 160.524 140.571 208.013 0.140  2.555  -1.005 C11 A1LU7 17 
A1LU7 C12 C15 C 0 1 N N R N N N 166.081 142.064 205.189 -1.587 -3.035 0.719  C12 A1LU7 18 
A1LU7 O13 O2  O 0 1 N N N N N N 164.842 141.919 203.148 -0.837 -0.856 1.262  O13 A1LU7 19 
A1LU7 C14 C16 C 0 1 Y N N N N N 160.933 136.225 205.665 -6.966 -0.901 1.321  C14 A1LU7 20 
A1LU7 C16 C17 C 0 1 N N N N N N 160.781 142.033 208.410 1.291  1.590  -0.877 C16 A1LU7 21 
A1LU7 N18 N3  N 0 1 N N N N N N 165.553 143.130 206.017 -0.150 -3.381 0.650  N18 A1LU7 22 
A1LU7 C19 C18 C 0 1 N N N N N N 167.279 142.615 204.434 -2.308 -3.577 -0.517 C19 A1LU7 23 
A1LU7 N21 N4  N 0 1 N N N N N N 160.765 143.117 207.403 1.895  1.137  -2.021 N21 A1LU7 24 
A1LU7 O22 O3  O 0 1 N N N N N N 161.001 142.246 209.549 1.673  1.222  0.214  O22 A1LU7 25 
A1LU7 C23 C19 C 0 1 N N N N N N 158.481 139.370 208.833 -0.542 4.951  -0.823 C23 A1LU7 26 
A1LU7 C25 C20 C 0 1 N N N N N N 167.482 141.866 203.135 -2.165 -5.076 -0.564 C25 A1LU7 27 
A1LU7 C27 C21 C 0 1 N N N N N N 158.097 139.778 207.414 -0.085 6.352  -0.411 C27 A1LU7 28 
A1LU7 O29 O4  O 0 1 N N N N N N 164.247 144.156 204.399 -0.147 -2.637 -1.461 O29 A1LU7 29 
A1LU7 O30 O5  O 0 1 N N N N N N 168.040 140.740 203.096 -2.721 -5.772 -1.568 O30 A1LU7 30 
A1LU7 O31 O6  O 0 1 N N N N N N 167.077 142.435 202.090 -1.551 -5.652 0.302  O31 A1LU7 31 
A1LU7 C32 C22 C 0 1 N N N N N N 162.461 144.565 208.424 2.424  -1.210 -1.732 C32 A1LU7 32 
A1LU7 C33 C23 C 0 1 N N N N N N 159.999 145.088 208.671 3.693  0.501  -0.456 C33 A1LU7 33 
A1LU7 C34 C24 C 0 1 N N N N N N 158.938 139.059 206.366 -1.224 7.348  -0.641 C34 A1LU7 34 
A1LU7 N35 N5  N 0 1 N N N N N N 163.760 144.864 207.800 2.630  -1.977 -0.625 N35 A1LU7 35 
A1LU7 O36 O7  O 0 1 N N N N N N 162.530 144.328 209.584 1.778  -1.640 -2.665 O36 A1LU7 36 
A1LU7 C37 C25 C 0 1 N N N N N N 160.403 146.433 209.301 5.057  -0.191 -0.407 C37 A1LU7 37 
A1LU7 N38 N6  N 0 1 N N N N N N 159.565 140.011 205.470 -0.785 8.693  -0.246 N38 A1LU7 38 
A1LU7 C39 C26 C 0 1 N N N N N N 159.511 146.813 210.487 5.752  0.147  0.914  C39 A1LU7 39 
A1LU7 N40 N7  N 0 1 N N N N N N 160.273 147.493 211.521 7.058  -0.515 0.962  N40 A1LU7 40 
A1LU7 C41 C27 C 0 1 N N N N N N 160.054 148.904 211.798 7.869  -0.357 2.061  C41 A1LU7 41 
A1LU7 N42 N8  N 0 1 N N N N N N 159.066 149.652 211.046 9.031  -0.947 2.103  N42 A1LU7 42 
A1LU7 N43 N9  N 0 1 N N N N N N 160.717 149.477 212.688 7.454  0.422  3.115  N43 A1LU7 43 
A1LU7 H1  H1  H 0 1 N N N N N N 162.628 139.000 203.624 -5.103 2.409  1.916  H1  A1LU7 44 
A1LU7 H2  H2  H 0 1 N N N N N N 160.631 137.872 202.733 -6.928 1.734  3.426  H2  A1LU7 45 
A1LU7 H3  H3  H 0 1 N N N N N N 160.514 138.906 209.372 0.870  3.953  0.462  H3  A1LU7 46 
A1LU7 H4  H4  H 0 1 N N N N N N 159.888 140.442 210.062 1.460  4.247  -1.191 H4  A1LU7 47 
A1LU7 H5  H5  H 0 1 N N N N N N 159.542 136.088 204.044 -8.122 -0.384 3.043  H5  A1LU7 48 
A1LU7 H6  H6  H 0 1 N N N N N N 161.106 145.113 206.826 3.728  0.244  -2.598 H6  A1LU7 49 
A1LU7 H7  H7  H 0 1 N N N N N N 164.831 146.021 206.452 2.314  -3.888 0.223  H7  A1LU7 50 
A1LU7 H8  H8  H 0 1 N N N N N N 163.155 145.604 205.959 2.195  -3.826 -1.555 H8  A1LU7 51 
A1LU7 H9  H9  H 0 1 N N N N N N 164.640 140.467 206.670 -2.681 0.857  1.325  H9  A1LU7 52 
A1LU7 H10 H10 H 0 1 N N N N N N 164.073 138.192 207.017 -4.109 2.168  -0.286 H10 A1LU7 53 
A1LU7 H11 H11 H 0 1 N N N N N N 164.775 138.261 205.366 -4.341 0.678  -1.231 H11 A1LU7 54 
A1LU7 H12 H12 H 0 1 N N N N N N 163.261 140.326 204.019 -3.550 -1.455 -0.172 H12 A1LU7 55 
A1LU7 H13 H13 H 0 1 N N N N N N 162.208 139.248 208.187 -1.136 2.541  0.734  H13 A1LU7 56 
A1LU7 H14 H14 H 0 1 N N N N N N 162.457 136.574 207.127 -5.657 -1.161 -0.350 H14 A1LU7 57 
A1LU7 H15 H15 H 0 1 N N N N N N 159.842 140.545 207.150 -0.211 2.570  -2.036 H15 A1LU7 58 
A1LU7 H16 H16 H 0 1 N N N N N N 166.416 141.231 205.825 -2.026 -3.464 1.619  H16 A1LU7 59 
A1LU7 H17 H17 H 0 1 N N N N N N 160.456 135.445 206.240 -7.490 -1.831 1.153  H17 A1LU7 60 
A1LU7 H18 H18 H 0 1 N N N N N N 165.847 143.184 206.971 0.315  -3.796 1.393  H18 A1LU7 61 
A1LU7 H19 H19 H 0 1 N N N N N N 168.179 142.508 205.057 -3.364 -3.313 -0.466 H19 A1LU7 62 
A1LU7 H20 H20 H 0 1 N N N N N N 167.109 143.679 204.215 -1.867 -3.142 -1.414 H20 A1LU7 63 
A1LU7 H21 H21 H 0 1 N N N N N N 160.538 142.892 206.456 1.622  1.418  -2.908 H21 A1LU7 64 
A1LU7 H22 H22 H 0 1 N N N N N N 157.787 139.845 209.542 -0.815 4.954  -1.878 H22 A1LU7 65 
A1LU7 H23 H23 H 0 1 N N N N N N 158.406 138.276 208.924 -1.406 4.660  -0.225 H23 A1LU7 66 
A1LU7 H24 H24 H 0 1 N N N N N N 158.244 140.863 207.304 0.188  6.350  0.644  H24 A1LU7 67 
A1LU7 H25 H25 H 0 1 N N N N N N 157.038 139.533 207.248 0.778  6.643  -1.009 H25 A1LU7 68 
A1LU7 H26 H26 H 0 1 N N N N N N 168.086 140.440 202.196 -2.603 -6.732 -1.556 H26 A1LU7 69 
A1LU7 H27 H27 H 0 1 N N N N N N 159.077 145.238 208.089 3.829  1.579  -0.370 H27 A1LU7 70 
A1LU7 H28 H28 H 0 1 N N N N N N 159.809 144.367 209.480 3.075  0.146  0.368  H28 A1LU7 71 
A1LU7 H29 H29 H 0 1 N N N N N N 158.291 138.387 205.783 -1.497 7.350  -1.697 H29 A1LU7 72 
A1LU7 H30 H30 H 0 1 N N N N N N 159.718 138.471 206.871 -2.087 7.057  -0.043 H30 A1LU7 73 
A1LU7 H31 H31 H 0 1 N N N N N N 164.546 144.815 208.416 3.177  -1.675 0.117  H31 A1LU7 74 
A1LU7 H32 H32 H 0 1 N N N N N N 161.444 146.361 209.650 4.920  -1.269 -0.480 H32 A1LU7 75 
A1LU7 H33 H33 H 0 1 N N N N N N 160.327 147.219 208.535 5.670  0.155  -1.238 H33 A1LU7 76 
A1LU7 H34 H34 H 0 1 N N N N N N 160.111 139.521 204.791 0.053  8.960  -0.741 H34 A1LU7 77 
A1LU7 H35 H35 H 0 1 N N N N N N 158.859 140.547 205.006 -1.520 9.370  -0.389 H35 A1LU7 78 
A1LU7 H37 H37 H 0 1 N N N N N N 158.710 147.480 210.135 5.889  1.226  0.988  H37 A1LU7 79 
A1LU7 H38 H38 H 0 1 N N N N N N 159.068 145.899 210.910 5.138  -0.199 1.746  H38 A1LU7 80 
A1LU7 H39 H39 H 0 1 N N N N N N 160.955 146.985 212.048 7.350  -1.065 0.218  H39 A1LU7 81 
A1LU7 H40 H40 H 0 1 N N N N N N 159.017 150.607 211.338 9.603  -0.835 2.879  H40 A1LU7 82 
A1LU7 H42 H42 H 0 1 N N N N N N 161.399 148.966 213.211 6.589  0.860  3.083  H42 A1LU7 83 
A1LU7 H43 H43 H 0 1 N N N N N N 160.566 150.447 212.878 8.026  0.533  3.890  H43 A1LU7 84 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1LU7 O31 C25 DOUB N N 1  
A1LU7 O30 C25 SING N N 2  
A1LU7 C25 C19 SING N N 3  
A1LU7 O13 C08 DOUB N N 4  
A1LU7 C15 C10 DOUB Y N 5  
A1LU7 C15 C20 SING Y N 6  
A1LU7 C10 C05 SING Y N 7  
A1LU7 C08 N04 SING N N 8  
A1LU7 C08 C12 SING N N 9  
A1LU7 O29 C24 DOUB N N 10 
A1LU7 C20 C14 DOUB Y N 11 
A1LU7 C19 C12 SING N N 12 
A1LU7 N04 C01 SING N N 13 
A1LU7 C12 N18 SING N N 14 
A1LU7 C05 C02 SING N N 15 
A1LU7 C05 C09 DOUB Y N 16 
A1LU7 N38 C34 SING N N 17 
A1LU7 C24 N18 SING N N 18 
A1LU7 C24 C28 SING N N 19 
A1LU7 C14 C09 SING Y N 20 
A1LU7 O07 C03 DOUB N N 21 
A1LU7 C02 C01 SING N N 22 
A1LU7 C01 C03 SING N N 23 
A1LU7 C34 C27 SING N N 24 
A1LU7 C28 N35 SING N N 25 
A1LU7 C03 N06 SING N N 26 
A1LU7 N21 C26 SING N N 27 
A1LU7 N21 C16 SING N N 28 
A1LU7 C27 C23 SING N N 29 
A1LU7 N06 C11 SING N N 30 
A1LU7 C26 C32 SING N N 31 
A1LU7 C26 C33 SING N N 32 
A1LU7 N35 C32 SING N N 33 
A1LU7 C11 C16 SING N N 34 
A1LU7 C11 C17 SING N N 35 
A1LU7 C16 O22 DOUB N N 36 
A1LU7 C32 O36 DOUB N N 37 
A1LU7 C33 C37 SING N N 38 
A1LU7 C23 C17 SING N N 39 
A1LU7 C37 C39 SING N N 40 
A1LU7 C39 N40 SING N N 41 
A1LU7 N42 C41 DOUB N N 42 
A1LU7 N40 C41 SING N N 43 
A1LU7 C41 N43 SING N N 44 
A1LU7 C10 H1  SING N N 45 
A1LU7 C15 H2  SING N N 46 
A1LU7 C17 H3  SING N N 47 
A1LU7 C17 H4  SING N N 48 
A1LU7 C20 H5  SING N N 49 
A1LU7 C26 H6  SING N N 50 
A1LU7 C28 H7  SING N N 51 
A1LU7 C28 H8  SING N N 52 
A1LU7 C01 H9  SING N N 53 
A1LU7 C02 H10 SING N N 54 
A1LU7 C02 H11 SING N N 55 
A1LU7 N04 H12 SING N N 56 
A1LU7 N06 H13 SING N N 57 
A1LU7 C09 H14 SING N N 58 
A1LU7 C11 H15 SING N N 59 
A1LU7 C12 H16 SING N N 60 
A1LU7 C14 H17 SING N N 61 
A1LU7 N18 H18 SING N N 62 
A1LU7 C19 H19 SING N N 63 
A1LU7 C19 H20 SING N N 64 
A1LU7 N21 H21 SING N N 65 
A1LU7 C23 H22 SING N N 66 
A1LU7 C23 H23 SING N N 67 
A1LU7 C27 H24 SING N N 68 
A1LU7 C27 H25 SING N N 69 
A1LU7 O30 H26 SING N N 70 
A1LU7 C33 H27 SING N N 71 
A1LU7 C33 H28 SING N N 72 
A1LU7 C34 H29 SING N N 73 
A1LU7 C34 H30 SING N N 74 
A1LU7 N35 H31 SING N N 75 
A1LU7 C37 H32 SING N N 76 
A1LU7 C37 H33 SING N N 77 
A1LU7 N38 H34 SING N N 78 
A1LU7 N38 H35 SING N N 79 
A1LU7 C39 H37 SING N N 80 
A1LU7 C39 H38 SING N N 81 
A1LU7 N40 H39 SING N N 82 
A1LU7 N42 H40 SING N N 83 
A1LU7 N43 H42 SING N N 84 
A1LU7 N43 H43 SING N N 85 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1LU7 InChI            InChI                1.06  "InChI=1S/C27H41N9O7/c28-11-5-4-9-18-24(41)34-17(10-6-12-31-27(29)30)23(40)32-15-21(37)33-20(14-22(38)39)26(43)36-19(25(42)35-18)13-16-7-2-1-3-8-16/h1-3,7-8,17-20H,4-6,9-15,28H2,(H,32,40)(H,33,37)(H,34,41)(H,35,42)(H,36,43)(H,38,39)(H4,29,30,31)/t17-,18-,19+,20+/m0/s1" 
A1LU7 InChIKey         InChI                1.06  NVHPXYIRNJFKTE-VNTMZGSJSA-N                                                                                                                                                                                                                                                   
A1LU7 SMILES_CANONICAL CACTVS               3.385 "NCCCC[C@@H]1NC(=O)[C@@H](Cc2ccccc2)NC(=O)[C@@H](CC(O)=O)NC(=O)CNC(=O)[C@H](CCCNC(N)=N)NC1=O"                                                                                                                                                                                 
A1LU7 SMILES           CACTVS               3.385 "NCCCC[CH]1NC(=O)[CH](Cc2ccccc2)NC(=O)[CH](CC(O)=O)NC(=O)CNC(=O)[CH](CCCNC(N)=N)NC1=O"                                                                                                                                                                                        
A1LU7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\NCCC[C@H]1C(=O)NCC(=O)N[C@@H](C(=O)N[C@@H](C(=O)N[C@H](C(=O)N1)CCCCN)Cc2ccccc2)CC(=O)O"                                                                                                                                                                          
A1LU7 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC2C(=O)NC(C(=O)NC(C(=O)NCC(=O)NC(C(=O)N2)CC(=O)O)CCCNC(=N)N)CCCCN"                                                                                                                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           A1LU7 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-[(2~{R},5~{R},8~{S},11~{S})-8-(4-azanylbutyl)-11-(3-carbamimidamidopropyl)-3,6,9,12,15-pentakis(oxidanylidene)-5-(phenylmethyl)-1,4,7,10,13-pentazacyclopentadec-2-yl]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1LU7 "Create component" 2023-12-15 PDBJ 
A1LU7 "Initial release"  2024-12-18 RCSB 
# 
