data_9S7
# 
_chem_comp.id                                    9S7 
_chem_comp.name                                  "5-acetamido-2,6-anhydro-3,5,8-trideoxy-3-fluoro-D-threo-L-galacto-nononic acid" 
_chem_comp.type                                  D-saccharide 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C11 H18 F N O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "5-(acetylamino)-2,6-anhydro-3,5,8-trideoxy-3-fluoro-D-threo-L-galacto-nononic acid" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-06-07 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        295.262 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9S7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5W2W 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      9S7 
_pdbx_chem_comp_synonyms.name         "5-(acetylamino)-2,6-anhydro-3,5,8-trideoxy-3-fluoro-D-threo-L-galacto-nononic acid" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9S7 O1B O1B O 0 1 N N N N N N 24.073 20.848 64.676 -3.292 1.653  -0.671 O1B 9S7 1  
9S7 C1  C1  C 0 1 N N N N N N 23.453 19.778 64.522 -2.580 2.216  0.126  C1  9S7 2  
9S7 O1A O1A O 0 1 N N N N N N 22.278 19.615 64.914 -2.896 3.448  0.555  O1A 9S7 3  
9S7 C2  C2  C 0 1 N N R N N N 24.094 18.818 63.862 -1.341 1.533  0.644  C2  9S7 4  
9S7 C3  C3  C 0 1 N N R N N N 23.453 17.490 63.604 -0.102 2.303  0.181  C3  9S7 5  
9S7 F1  F1  F 0 1 N N N N N N 23.515 16.836 64.805 -0.094 2.379  -1.216 F1  9S7 6  
9S7 O6  O6  O 0 1 N N N N N N 25.443 19.106 63.439 -1.287 0.197  0.139  O6  9S7 7  
9S7 C6  C6  C 0 1 N N R N N N 25.997 18.285 62.395 -0.158 -0.553 0.593  C6  9S7 8  
9S7 C7  C7  C 0 1 N N R N N N 27.504 18.551 62.368 -0.220 -1.968 0.014  C7  9S7 9  
9S7 C8  C8  C 0 1 N N N N N N 27.797 19.964 61.896 -1.561 -2.608 0.376  C8  9S7 10 
9S7 C9  C9  C 0 1 N N N N N N 29.240 20.367 62.214 -1.574 -4.064 -0.094 C9  9S7 11 
9S7 O9  O9  O 0 1 N N N N N N 30.086 19.485 61.461 -2.827 -4.663 0.245  O9  9S7 12 
9S7 O7  O7  O 0 1 N N N N N N 28.012 18.402 63.698 -0.089 -1.907 -1.408 O7  9S7 13 
9S7 C5  C5  C 0 1 N N R N N N 25.673 16.826 62.668 1.129  0.134  0.127  C5  9S7 14 
9S7 C4  C4  C 0 1 N N R N N N 24.176 16.649 62.550 1.155  1.569  0.660  C4  9S7 15 
9S7 O4  O4  O 0 1 N N N N N N 23.853 15.281 62.776 2.317  2.241  0.169  O4  9S7 16 
9S7 N5  N5  N 0 1 N N N N N N 26.183 16.059 61.524 2.289  -0.601 0.639  N5  9S7 17 
9S7 C10 C10 C 0 1 N N N N N N 26.856 14.925 61.724 3.470  -0.527 -0.005 C10 9S7 18 
9S7 O10 O10 O 0 1 N N N N N N 27.089 14.519 62.857 3.574  0.147  -1.008 O10 9S7 19 
9S7 C11 C11 C 0 1 N N N N N N 27.324 14.197 60.488 4.663  -1.283 0.522  C11 9S7 20 
9S7 H1  H1  H 0 1 N N N N N N 21.968 20.413 65.326 -3.703 3.844  0.197  H1  9S7 21 
9S7 H2  H2  H 0 1 N N N N N N 23.704 19.201 62.907 -1.368 1.509  1.734  H2  9S7 22 
9S7 H3  H3  H 0 1 N N N N N N 22.411 17.643 63.286 -0.120 3.309  0.600  H3  9S7 23 
9S7 H4  H4  H 0 1 N N N N N N 25.569 18.571 61.423 -0.169 -0.604 1.681  H4  9S7 24 
9S7 H5  H5  H 0 1 N N N N N N 27.985 17.833 61.688 0.592  -2.565 0.429  H5  9S7 25 
9S7 H6  H6  H 0 1 N N N N N N 27.111 20.660 62.400 -1.700 -2.574 1.457  H6  9S7 26 
9S7 H7  H7  H 0 1 N N N N N N 27.641 20.019 60.809 -2.368 -2.062 -0.112 H7  9S7 27 
9S7 H8  H8  H 0 1 N N N N N N 29.437 20.255 63.290 -1.435 -4.099 -1.174 H8  9S7 28 
9S7 H9  H9  H 0 1 N N N N N N 29.418 21.411 61.915 -0.767 -4.611 0.394  H9  9S7 29 
9S7 H10 H10 H 0 1 N N N N N N 30.996 19.699 61.628 -2.906 -5.588 -0.024 H10 9S7 30 
9S7 H11 H11 H 0 1 N N N N N N 27.836 17.521 64.008 -0.779 -1.390 -1.844 H11 9S7 31 
9S7 H12 H12 H 0 1 N N N N N N 26.066 16.480 63.635 1.160  0.149  -0.963 H12 9S7 32 
9S7 H13 H13 H 0 1 N N N N N N 23.848 16.965 61.549 1.176  1.553  1.750  H13 9S7 33 
9S7 H14 H14 H 0 1 N N N N N N 22.913 15.161 62.704 2.397  3.157  0.468  H14 9S7 34 
9S7 H15 H15 H 0 1 N N N N N N 26.025 16.388 60.593 2.205  -1.140 1.441  H15 9S7 35 
9S7 H16 H16 H 0 1 N N N N N N 27.877 13.293 60.782 4.380  -1.827 1.423  H16 9S7 36 
9S7 H17 H17 H 0 1 N N N N N N 26.454 13.912 59.879 5.010  -1.987 -0.234 H17 9S7 37 
9S7 H18 H18 H 0 1 N N N N N N 27.982 14.855 59.902 5.463  -0.581 0.758  H18 9S7 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9S7 C11 C10 SING N N 1  
9S7 O9  C9  SING N N 2  
9S7 N5  C10 SING N N 3  
9S7 N5  C5  SING N N 4  
9S7 C10 O10 DOUB N N 5  
9S7 C8  C9  SING N N 6  
9S7 C8  C7  SING N N 7  
9S7 C7  C6  SING N N 8  
9S7 C7  O7  SING N N 9  
9S7 C6  C5  SING N N 10 
9S7 C6  O6  SING N N 11 
9S7 C4  C5  SING N N 12 
9S7 C4  O4  SING N N 13 
9S7 C4  C3  SING N N 14 
9S7 O6  C2  SING N N 15 
9S7 C3  C2  SING N N 16 
9S7 C3  F1  SING N N 17 
9S7 C2  C1  SING N N 18 
9S7 C1  O1B DOUB N N 19 
9S7 C1  O1A SING N N 20 
9S7 O1A H1  SING N N 21 
9S7 C2  H2  SING N N 22 
9S7 C3  H3  SING N N 23 
9S7 C6  H4  SING N N 24 
9S7 C7  H5  SING N N 25 
9S7 C8  H6  SING N N 26 
9S7 C8  H7  SING N N 27 
9S7 C9  H8  SING N N 28 
9S7 C9  H9  SING N N 29 
9S7 O9  H10 SING N N 30 
9S7 O7  H11 SING N N 31 
9S7 C5  H12 SING N N 32 
9S7 C4  H13 SING N N 33 
9S7 O4  H14 SING N N 34 
9S7 N5  H15 SING N N 35 
9S7 C11 H16 SING N N 36 
9S7 C11 H17 SING N N 37 
9S7 C11 H18 SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9S7 SMILES           ACDLabs              12.01 "O=C(O)C1C(F)C(C(C(O1)C(O)CCO)NC(=O)C)O"                                                                                                           
9S7 InChI            InChI                1.03  "InChI=1S/C11H18FNO7/c1-4(15)13-7-8(17)6(12)10(11(18)19)20-9(7)5(16)2-3-14/h5-10,14,16-17H,2-3H2,1H3,(H,13,15)(H,18,19)/t5-,6-,7-,8+,9+,10+/m1/s1" 
9S7 InChIKey         InChI                1.03  MCQSBVLYLCZSNU-AIGBEWNKSA-N                                                                                                                        
9S7 SMILES_CANONICAL CACTVS               3.385 "CC(=O)N[C@@H]1[C@@H](O)[C@@H](F)[C@H](O[C@H]1[C@H](O)CCO)C(O)=O"                                                                                  
9S7 SMILES           CACTVS               3.385 "CC(=O)N[CH]1[CH](O)[CH](F)[CH](O[CH]1[CH](O)CCO)C(O)=O"                                                                                           
9S7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(=O)N[C@@H]1[C@H]([C@H](C(O[C@H]1[C@@H](CCO)O)C(=O)O)F)O"                                                                                       
9S7 SMILES           "OpenEye OEToolkits" 2.0.6 "CC(=O)NC1C(C(C(OC1C(CCO)O)C(=O)O)F)O"                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9S7 "SYSTEMATIC NAME" ACDLabs              12.01 "5-(acetylamino)-2,6-anhydro-3,5,8-trideoxy-3-fluoro-D-threo-L-galacto-nononic acid"                                       
9S7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 
;(3~{R},4~{R},5~{R},6~{R})-5-acetamido-6-[(1~{R})-1,3-bis(oxidanyl)propyl]-3-fluoranyl-4-oxidanyl-oxane-2-carboxylic
acid
;
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
9S7 "CARBOHYDRATE ISOMER"                 D        PDB ? 
9S7 "CARBOHYDRATE RING"                   pyranose PDB ? 
9S7 "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9S7 "Create component"     2017-06-07 RCSB 
9S7 "Initial release"      2018-02-21 RCSB 
9S7 "Other modification"   2020-07-03 RCSB 
9S7 "Modify name"          2020-07-17 RCSB 
9S7 "Modify synonyms"      2020-07-17 RCSB 
9S7 "Modify internal type" 2020-07-17 RCSB 
9S7 "Modify linking type"  2020-07-17 RCSB 
9S7 "Modify PCM"           2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            9S7 
_pdbx_chem_comp_pcm.modified_residue_id                TYR 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Carbohydrate 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C2 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OH 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
