data_9O7
# 
_chem_comp.id                                    9O7 
_chem_comp.name                                  "[(3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-oxolan-3-yl] [oxidanyl(phosphonooxy)phosphoryl] hydrogen phosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C9 H14 N5 O12 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-05-19 
_chem_comp.pdbx_modified_date                    2017-12-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        477.155 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9O7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5VU8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9O7 N1    N1  N 0 1 Y N N 93.233 123.434 462.233 6.699  -2.005 -1.115 N1    9O7 1  
9O7 C2    C1  C 0 1 Y N N 93.559 122.141 462.022 6.754  -0.686 -1.084 C2    9O7 2  
9O7 N3    N2  N 0 1 Y N N 92.778 121.061 462.220 5.843  0.046  -0.479 N3    9O7 3  
9O7 C4    C2  C 0 1 Y N N 91.596 121.422 462.667 4.813  -0.527 0.135  C4    9O7 4  
9O7 C5    C3  C 0 1 Y N N 91.142 122.750 462.925 4.708  -1.928 0.131  C5    9O7 5  
9O7 C6    C4  C 0 1 Y N N 92.028 123.752 462.683 5.706  -2.666 -0.528 C6    9O7 6  
9O7 N6    N3  N 0 1 N N N 91.657 125.136 462.914 5.657  -4.049 -0.566 N6    9O7 7  
9O7 N7    N4  N 0 1 Y N N 89.710 122.685 463.429 3.584  -2.247 0.816  N7    9O7 8  
9O7 C8    C5  C 0 1 Y N N 89.550 121.351 463.389 3.006  -1.157 1.231  C8    9O7 9  
9O7 N9    N5  N 0 1 Y N N 90.576 120.706 462.976 3.726  -0.069 0.836  N9    9O7 10 
9O7 PA    P1  P 0 1 N N N 85.891 118.859 463.448 -1.100 1.732  -0.463 PA    9O7 11 
9O7 PB    P2  P 0 1 N N N 85.706 117.925 466.194 -3.639 0.218  -0.681 PB    9O7 12 
9O7 PG    P3  P 0 1 N N N 83.159 117.306 467.426 -5.588 -1.717 0.434  PG    9O7 13 
9O7 "C1'" C6  C 0 1 N N R 90.593 119.270 462.867 3.399  1.332  1.110  "C1'" 9O7 14 
9O7 O1A   O1  O 0 1 N N N 85.232 119.817 462.565 -1.773 2.909  0.131  O1A   9O7 15 
9O7 O1B   O2  O 0 1 N N N 87.037 118.378 466.593 -3.854 0.042  -2.267 O1B   9O7 16 
9O7 "C2'" C7  C 0 1 N N R 89.744 118.654 463.916 2.621  1.931  -0.079 "C2'" 9O7 17 
9O7 "O2'" O3  O 0 1 N N N 90.271 117.648 464.255 3.333  3.038  -0.635 "O2'" 9O7 18 
9O7 O2A   O4  O 0 1 N N N 85.720 117.617 462.701 -0.751 2.035  -2.005 O2A   9O7 19 
9O7 O2B   O5  O 0 1 N N N 85.970 116.535 465.829 -4.417 1.382  -0.204 O2B   9O7 20 
9O7 O2G   O6  O 0 1 N N N 82.407 117.526 466.194 -6.468 -1.619 -0.752 O2G   9O7 21 
9O7 "C3'" C8  C 0 1 N N S 88.494 118.293 463.266 1.283  2.402  0.541  "C3'" 9O7 22 
9O7 "O3'" O7  O 0 1 N N N 87.481 119.242 463.647 0.258  1.426  0.345  "O3'" 9O7 23 
9O7 O3A   O8  O 0 1 N N N 85.140 118.791 464.912 -2.076 0.454  -0.375 O3A   9O7 24 
9O7 O3B   O9  O 0 1 N N N 84.642 118.023 467.446 -4.139 -1.111 0.079  O3B   9O7 25 
9O7 O3G   O10 O 0 1 N N N 83.205 115.855 467.573 -6.233 -0.886 1.653  O3G   9O7 26 
9O7 "C4'" C9  C 0 1 N N N 88.697 118.345 461.756 1.648  2.527  2.042  "C4'" 9O7 27 
9O7 "O4'" O11 O 0 1 N N N 90.078 118.857 461.548 2.547  1.419  2.264  "O4'" 9O7 28 
9O7 O1G   O12 O 0 1 N N N 82.262 117.754 468.488 -5.433 -3.262 0.860  O1G   9O7 29 
9O7 H1    H1  H 0 1 N N N 94.556 121.951 461.654 7.579  -0.189 -1.574 H1    9O7 30 
9O7 H2    H2  H 0 1 N N N 92.427 125.731 462.684 6.352  -4.547 -1.025 H2    9O7 31 
9O7 H3    H3  H 0 1 N N N 90.872 125.371 462.341 4.927  -4.519 -0.134 H3    9O7 32 
9O7 H4    H4  H 0 1 N N N 88.632 120.863 463.681 2.091  -1.120 1.804  H4    9O7 33 
9O7 H5    H5  H 0 1 N N N 91.624 118.904 462.981 4.314  1.901  1.278  H5    9O7 34 
9O7 H6    H6  H 0 1 N N N 87.656 117.663 466.501 -3.372 -0.704 -2.649 H6    9O7 35 
9O7 H7    H7  H 0 1 N N N 89.559 119.380 464.721 2.444  1.171  -0.840 H7    9O7 36 
9O7 H8    H8  H 0 1 N N N 89.749 117.228 464.929 2.888  3.453  -1.387 H8    9O7 37 
9O7 H9    H9  H 0 1 N N N 85.250 117.794 461.895 -0.307 1.306  -2.459 H9    9O7 38 
9O7 H10   H10 H 0 1 N N N 88.195 117.275 463.557 0.983  3.366  0.132  H10   9O7 39 
9O7 H11   H11 H 0 1 N N N 82.746 115.448 466.848 -5.708 -0.907 2.464  H11   9O7 40 
9O7 H12   H12 H 0 1 N N N 87.964 119.023 461.294 2.150  3.474  2.238  H12   9O7 41 
9O7 H13   H13 H 0 1 N N N 88.592 117.340 461.321 0.757  2.431  2.663  H13   9O7 42 
9O7 H14   H14 H 0 1 N N N 81.448 118.062 468.107 -6.268 -3.693 1.089  H14   9O7 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9O7 "O4'" "C4'" SING N N 1  
9O7 "O4'" "C1'" SING N N 2  
9O7 "C4'" "C3'" SING N N 3  
9O7 C2    N3    DOUB Y N 4  
9O7 C2    N1    SING Y N 5  
9O7 N3    C4    SING Y N 6  
9O7 N1    C6    DOUB Y N 7  
9O7 O1A   PA    DOUB N N 8  
9O7 C4    C5    DOUB Y N 9  
9O7 C4    N9    SING Y N 10 
9O7 C6    N6    SING N N 11 
9O7 C6    C5    SING Y N 12 
9O7 O2A   PA    SING N N 13 
9O7 "C1'" N9    SING N N 14 
9O7 "C1'" "C2'" SING N N 15 
9O7 C5    N7    SING Y N 16 
9O7 N9    C8    SING Y N 17 
9O7 "C3'" "O3'" SING N N 18 
9O7 "C3'" "C2'" SING N N 19 
9O7 C8    N7    DOUB Y N 20 
9O7 PA    "O3'" SING N N 21 
9O7 PA    O3A   SING N N 22 
9O7 "C2'" "O2'" SING N N 23 
9O7 O3A   PB    SING N N 24 
9O7 O2B   PB    DOUB N N 25 
9O7 O2G   PG    DOUB N N 26 
9O7 PB    O1B   SING N N 27 
9O7 PB    O3B   SING N N 28 
9O7 PG    O3B   SING N N 29 
9O7 PG    O3G   SING N N 30 
9O7 PG    O1G   SING N N 31 
9O7 C2    H1    SING N N 32 
9O7 N6    H2    SING N N 33 
9O7 N6    H3    SING N N 34 
9O7 C8    H4    SING N N 35 
9O7 "C1'" H5    SING N N 36 
9O7 O1B   H6    SING N N 37 
9O7 "C2'" H7    SING N N 38 
9O7 "O2'" H8    SING N N 39 
9O7 O2A   H9    SING N N 40 
9O7 "C3'" H10   SING N N 41 
9O7 O3G   H11   SING N N 42 
9O7 "C4'" H12   SING N N 43 
9O7 "C4'" H13   SING N N 44 
9O7 O1G   H14   SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9O7 InChI            InChI                1.03  "InChI=1S/C9H14N5O12P3/c10-7-5-8(12-2-11-7)14(3-13-5)9-6(15)4(1-23-9)24-28(19,20)26-29(21,22)25-27(16,17)18/h2-4,6,9,15H,1H2,(H,19,20)(H,21,22)(H2,10,11,12)(H2,16,17,18)/t4-,6+,9+/m0/s1" 
9O7 InChIKey         InChI                1.03  AWDFERYZHFHVNT-AFEQZKEHSA-N                                                                                                                                                                
9O7 SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3OC[C@H](O[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@H]3O"                                                                                                                
9O7 SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3OC[CH](O[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH]3O"                                                                                                                    
9O7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H](CO3)OP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N"                                                                                                                
9O7 SMILES           "OpenEye OEToolkits" 2.0.6 "c1nc(c2c(n1)n(cn2)C3C(C(CO3)OP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N"                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9O7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-oxolan-3-yl] [oxidanyl(phosphonooxy)phosphoryl] hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9O7 "Create component" 2017-05-19 RCSB 
9O7 "Initial release"  2017-12-06 RCSB 
# 
