data_9N7
# 
_chem_comp.id                                    9N7 
_chem_comp.name                                  "4-{[(2S)-2-cyclohexyl-2-{5,6-difluoro-2-[4-(1,3-thiazol-2-yl)phenyl]-1H-benzimidazol-1-yl}acetyl]amino}benzoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C31 H26 F2 N4 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-05-19 
_chem_comp.pdbx_modified_date                    2017-06-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        572.625 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9N7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5Q1B 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9N7 N1  N1  N 0 1 Y N N 12.949 24.154 3.835  -1.990 -0.810 -0.034 N1  9N7 1  
9N7 N3  N2  N 0 1 Y N N 13.227 25.823 2.366  -2.074 -2.614 1.211  N3  9N7 2  
9N7 C4  C1  C 0 1 Y N N 11.758 24.874 3.850  -3.267 -0.882 0.490  C4  9N7 3  
9N7 C5  C2  C 0 1 Y N N 11.936 25.898 2.938  -3.301 -2.042 1.284  C5  9N7 4  
9N7 C6  C3  C 0 1 N N N 12.354 21.796 4.416  -0.403 1.017  -0.213 C6  9N7 5  
9N7 C7  C4  C 0 1 N N S 13.306 22.973 4.662  -1.473 0.231  -0.926 C7  9N7 6  
9N7 C8  C5  C 0 1 Y N N 10.589 24.699 4.574  -4.398 -0.086 0.376  C8  9N7 7  
9N7 C10 C6  C 0 1 Y N N 10.898 26.803 2.713  -4.482 -2.387 1.950  C10 9N7 8  
9N7 N12 N3  N 0 1 N N N 11.989 21.618 3.125  0.349  1.903  -0.895 N12 9N7 9  
9N7 C13 C7  C 0 1 Y N N 9.586  25.596 4.342  -5.555 -0.437 1.043  C13 9N7 10 
9N7 C15 C8  C 0 1 Y N N 9.734  26.626 3.430  -5.595 -1.586 1.827  C15 9N7 11 
9N7 C20 C9  C 0 1 Y N N 9.472  18.550 1.659  3.421  3.950  1.035  C20 9N7 12 
9N7 C21 C10 C 0 1 Y N N 21.139 22.434 1.193  6.048  -3.125 -1.980 C21 9N7 13 
9N7 C22 C11 C 0 1 Y N N 20.768 21.285 0.608  6.542  -3.827 -0.953 C22 9N7 14 
9N7 C24 C12 C 0 1 Y N N 15.234 23.143 1.858  0.885  -2.938 1.030  C24 9N7 15 
9N7 C26 C13 C 0 1 Y N N 16.460 22.619 1.494  2.197  -3.232 0.735  C26 9N7 16 
9N7 C28 C14 C 0 1 N N N 13.418 23.338 6.154  -2.612 1.169  -1.329 C28 9N7 17 
9N7 C2  C15 C 0 1 Y N N 13.790 24.786 2.938  -1.296 -1.891 0.442  C2  9N7 18 
9N7 F33 F1  F 0 1 N N N 8.709  27.482 3.245  -6.736 -1.919 2.470  F33 9N7 19 
9N7 F32 F2  F 0 1 N N N 8.422  25.471 5.017  -6.655 0.339  0.931  F32 9N7 20 
9N7 C14 C16 C 0 1 Y N N 15.150 24.323 2.609  0.114  -2.202 0.127  C14 9N7 21 
9N7 C18 C17 C 0 1 Y N N 17.646 23.257 1.855  2.757  -2.793 -0.467 C18 9N7 22 
9N7 C9  C18 C 0 1 Y N N 18.964 22.663 1.451  4.165  -3.109 -0.784 C9  9N7 23 
9N7 N11 N4  N 0 1 Y N N 20.120 23.227 1.678  4.794  -2.755 -1.869 N11 9N7 24 
9N7 S17 S1  S 0 1 Y N N 19.062 21.136 0.640  5.267  -4.015 0.249  S17 9N7 25 
9N7 C27 C19 C 0 1 Y N N 17.572 24.439 2.603  1.986  -2.057 -1.370 C27 9N7 26 
9N7 C25 C20 C 0 1 Y N N 16.337 24.968 2.977  0.676  -1.758 -1.072 C25 9N7 27 
9N7 O19 O1  O 0 1 N N N 11.973 21.085 5.345  -0.219 0.853  0.975  O19 9N7 28 
9N7 C29 C21 C 0 1 Y N N 11.129 20.590 2.630  1.377  2.588  -0.249 C29 9N7 29 
9N7 C35 C22 C 0 1 Y N N 10.955 20.417 1.256  2.095  1.965  0.768  C35 9N7 30 
9N7 C30 C23 C 0 1 Y N N 10.133 19.411 0.781  3.111  2.638  1.408  C30 9N7 31 
9N7 C16 C24 C 0 1 N N N 8.576  17.448 1.142  4.512  4.672  1.715  C16 9N7 32 
9N7 O23 O2  O 0 1 N N N 8.293  16.477 1.829  5.209  4.070  2.699  O23 9N7 33 
9N7 O34 O3  O 0 1 N N N 8.137  17.607 -0.076 4.784  5.810  1.387  O34 9N7 34 
9N7 C31 C25 C 0 1 Y N N 9.656  18.724 3.032  2.698  4.573  0.014  C31 9N7 35 
9N7 C36 C26 C 0 1 Y N N 10.476 19.729 3.511  1.684  3.893  -0.622 C36 9N7 36 
9N7 C37 C27 C 0 1 N N N 13.934 24.795 6.353  -3.646 0.393  -2.147 C37 9N7 37 
9N7 C40 C28 C 0 1 N N N 14.040 25.166 7.843  -4.786 1.331  -2.551 C40 9N7 38 
9N7 C41 C29 C 0 1 N N N 14.930 24.185 8.597  -4.227 2.479  -3.393 C41 9N7 39 
9N7 C39 C30 C 0 1 N N N 14.440 22.739 8.405  -3.193 3.255  -2.575 C39 9N7 40 
9N7 C38 C31 C 0 1 N N N 14.338 22.377 6.905  -2.053 2.317  -2.171 C38 9N7 41 
9N7 H1  H1  H 0 1 N N N 14.306 22.642 4.343  -1.050 -0.232 -1.818 H1  9N7 42 
9N7 H2  H2  H 0 1 N N N 10.477 23.894 5.285  -4.373 0.805  -0.233 H2  9N7 43 
9N7 H3  H3  H 0 1 N N N 11.003 27.611 2.004  -4.520 -3.278 2.558  H3  9N7 44 
9N7 H4  H4  H 0 1 N N N 12.355 22.265 2.456  0.176  2.064  -1.836 H4  9N7 45 
9N7 H5  H5  H 0 1 N N N 22.176 22.722 1.279  6.645  -2.876 -2.845 H5  9N7 46 
9N7 H6  H6  H 0 1 N N N 21.445 20.561 0.180  7.548  -4.212 -0.875 H6  9N7 47 
9N7 H7  H7  H 0 1 N N N 14.328 22.636 1.560  0.450  -3.281 1.957  H7  9N7 48 
9N7 H8  H8  H 0 1 N N N 16.500 21.703 0.923  2.793  -3.801 1.433  H8  9N7 49 
9N7 H9  H9  H 0 1 N N N 12.414 23.272 6.598  -3.086 1.571  -0.434 H9  9N7 50 
9N7 H10 H10 H 0 1 N N N 18.481 24.946 2.893  2.420  -1.717 -2.299 H10 9N7 51 
9N7 H11 H11 H 0 1 N N N 16.296 25.880 3.554  0.080  -1.189 -1.770 H11 9N7 52 
9N7 H12 H12 H 0 1 N N N 11.463 21.070 0.562  1.854  0.952  1.055  H12 9N7 53 
9N7 H13 H13 H 0 1 N N N 10.001 19.290 -0.284 3.667  2.154  2.196  H13 9N7 54 
9N7 H14 H14 H 0 1 N N N 7.726  15.895 1.337  5.915  4.584  3.115  H14 9N7 55 
9N7 H15 H15 H 0 1 N N N 9.153  18.067 3.727  2.935  5.586  -0.276 H15 9N7 56 
9N7 H16 H16 H 0 1 N N N 10.612 19.848 4.576  1.125  4.374  -1.411 H16 9N7 57 
9N7 H17 H17 H 0 1 N N N 14.928 24.887 5.892  -3.173 -0.010 -3.043 H17 9N7 58 
9N7 H18 H18 H 0 1 N N N 13.237 25.490 5.862  -4.044 -0.426 -1.548 H18 9N7 59 
9N7 H19 H19 H 0 1 N N N 14.466 26.176 7.931  -5.522 0.778  -3.134 H19 9N7 60 
9N7 H20 H20 H 0 1 N N N 13.034 25.152 8.288  -5.259 1.733  -1.655 H20 9N7 61 
9N7 H21 H21 H 0 1 N N N 15.960 24.269 8.219  -3.753 2.076  -4.288 H21 9N7 62 
9N7 H22 H22 H 0 1 N N N 14.911 24.432 9.669  -5.038 3.147  -3.680 H22 9N7 63 
9N7 H23 H23 H 0 1 N N N 13.448 22.632 8.868  -2.795 4.074  -3.175 H23 9N7 64 
9N7 H24 H24 H 0 1 N N N 15.148 22.053 8.892  -3.666 3.658  -1.679 H24 9N7 65 
9N7 H25 H25 H 0 1 N N N 13.940 21.356 6.811  -1.317 2.870  -1.588 H25 9N7 66 
9N7 H26 H26 H 0 1 N N N 15.342 22.422 6.458  -1.580 1.914  -3.067 H26 9N7 67 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9N7 O34 C16 DOUB N N 1  
9N7 C22 S17 SING Y N 2  
9N7 C22 C21 DOUB Y N 3  
9N7 S17 C9  SING Y N 4  
9N7 C30 C35 DOUB Y N 5  
9N7 C30 C20 SING Y N 6  
9N7 C16 C20 SING N N 7  
9N7 C16 O23 SING N N 8  
9N7 C21 N11 SING Y N 9  
9N7 C35 C29 SING Y N 10 
9N7 C9  N11 DOUB Y N 11 
9N7 C9  C18 SING N N 12 
9N7 C26 C18 DOUB Y N 13 
9N7 C26 C24 SING Y N 14 
9N7 C20 C31 DOUB Y N 15 
9N7 C18 C27 SING Y N 16 
9N7 C24 C14 DOUB Y N 17 
9N7 N3  C5  SING Y N 18 
9N7 N3  C2  DOUB Y N 19 
9N7 C27 C25 DOUB Y N 20 
9N7 C14 C2  SING N N 21 
9N7 C14 C25 SING Y N 22 
9N7 C29 N12 SING N N 23 
9N7 C29 C36 DOUB Y N 24 
9N7 C10 C5  DOUB Y N 25 
9N7 C10 C15 SING Y N 26 
9N7 C5  C4  SING Y N 27 
9N7 C2  N1  SING Y N 28 
9N7 C31 C36 SING Y N 29 
9N7 N12 C6  SING N N 30 
9N7 F33 C15 SING N N 31 
9N7 C15 C13 DOUB Y N 32 
9N7 N1  C4  SING Y N 33 
9N7 N1  C7  SING N N 34 
9N7 C4  C8  DOUB Y N 35 
9N7 C13 C8  SING Y N 36 
9N7 C13 F32 SING N N 37 
9N7 C6  C7  SING N N 38 
9N7 C6  O19 DOUB N N 39 
9N7 C7  C28 SING N N 40 
9N7 C28 C37 SING N N 41 
9N7 C28 C38 SING N N 42 
9N7 C37 C40 SING N N 43 
9N7 C38 C39 SING N N 44 
9N7 C40 C41 SING N N 45 
9N7 C39 C41 SING N N 46 
9N7 C7  H1  SING N N 47 
9N7 C8  H2  SING N N 48 
9N7 C10 H3  SING N N 49 
9N7 N12 H4  SING N N 50 
9N7 C21 H5  SING N N 51 
9N7 C22 H6  SING N N 52 
9N7 C24 H7  SING N N 53 
9N7 C26 H8  SING N N 54 
9N7 C28 H9  SING N N 55 
9N7 C27 H10 SING N N 56 
9N7 C25 H11 SING N N 57 
9N7 C35 H12 SING N N 58 
9N7 C30 H13 SING N N 59 
9N7 O23 H14 SING N N 60 
9N7 C31 H15 SING N N 61 
9N7 C36 H16 SING N N 62 
9N7 C37 H17 SING N N 63 
9N7 C37 H18 SING N N 64 
9N7 C40 H19 SING N N 65 
9N7 C40 H20 SING N N 66 
9N7 C41 H21 SING N N 67 
9N7 C41 H22 SING N N 68 
9N7 C39 H23 SING N N 69 
9N7 C39 H24 SING N N 70 
9N7 C38 H25 SING N N 71 
9N7 C38 H26 SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9N7 SMILES           ACDLabs              12.01 "n1(c4cc(F)c(cc4nc1c2ccc(cc2)c3nccs3)F)C(C(=O)Nc5ccc(cc5)C(O)=O)C6CCCCC6"                                                                                                                                   
9N7 InChI            InChI                1.03  "InChI=1S/C31H26F2N4O3S/c32-23-16-25-26(17-24(23)33)37(28(36-25)19-6-8-20(9-7-19)30-34-14-15-41-30)27(18-4-2-1-3-5-18)29(38)35-22-12-10-21(11-13-22)31(39)40/h6-18,27H,1-5H2,(H,35,38)(H,39,40)/t27-/m0/s1" 
9N7 InChIKey         InChI                1.03  DUGIQUVAQZHWSE-MHZLTWQESA-N                                                                                                                                                                                 
9N7 SMILES_CANONICAL CACTVS               3.385 "OC(=O)c1ccc(NC(=O)[C@H](C2CCCCC2)n3c4cc(F)c(F)cc4nc3c5ccc(cc5)c6sccn6)cc1"                                                                                                                                 
9N7 SMILES           CACTVS               3.385 "OC(=O)c1ccc(NC(=O)[CH](C2CCCCC2)n3c4cc(F)c(F)cc4nc3c5ccc(cc5)c6sccn6)cc1"                                                                                                                                  
9N7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(ccc1c2nc3cc(c(cc3n2[C@@H](C4CCCCC4)C(=O)Nc5ccc(cc5)C(=O)O)F)F)c6nccs6"                                                                                                                                
9N7 SMILES           "OpenEye OEToolkits" 2.0.6 "c1cc(ccc1c2nc3cc(c(cc3n2C(C4CCCCC4)C(=O)Nc5ccc(cc5)C(=O)O)F)F)c6nccs6"                                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9N7 "SYSTEMATIC NAME" ACDLabs              12.01 "4-{[(2S)-2-cyclohexyl-2-{5,6-difluoro-2-[4-(1,3-thiazol-2-yl)phenyl]-1H-benzimidazol-1-yl}acetyl]amino}benzoic acid"         
9N7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "4-[[(2~{S})-2-[5,6-bis(fluoranyl)-2-[4-(1,3-thiazol-2-yl)phenyl]benzimidazol-1-yl]-2-cyclohexyl-ethanoyl]amino]benzoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9N7 "Create component" 2017-05-19 RCSB 
9N7 "Initial release"  2017-07-05 RCSB 
# 
