data_8I7
# 
_chem_comp.id                                    8I7 
_chem_comp.name                                  "(1R,2S,5S)-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(3-methylbutanoyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H44 N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-09-16 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        492.651 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8I7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7S75 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8I7 C1  C1  C 0 1 N N N N N N -7.211  -19.896 -17.944 -5.727 -1.280 -1.169 C1  8I7 1  
8I7 C11 C2  C 0 1 N N S N N N -9.635  -17.217 -19.126 -2.530 -0.072 0.556  C11 8I7 2  
8I7 C12 C3  C 0 1 N N N N N N -9.681  -15.994 -18.248 -1.139 -0.173 -0.017 C12 8I7 3  
8I7 C13 C4  C 0 1 N N N N N N -8.208  -14.755 -19.871 -0.472 2.107  0.888  C13 8I7 4  
8I7 C14 C5  C 0 1 N N S N N N -9.190  -13.647 -17.946 1.082  0.983  -0.452 C14 8I7 5  
8I7 C15 C6  C 0 1 N N N N N N -10.611 -13.160 -18.065 2.128  0.660  0.585  C15 8I7 6  
8I7 C16 C7  C 0 1 N N S N N N -7.603  -13.354 -19.816 0.161  3.204  0.005  C16 8I7 7  
8I7 C17 C8  C 0 1 N N S N N N -12.594 -12.228 -17.004 4.407  0.070  1.213  C17 8I7 8  
8I7 C18 C9  C 0 1 N N N N N N -6.742  -13.044 -18.578 -0.044 3.119  -1.508 C18 8I7 9  
8I7 C19 C10 C 0 1 N N N N N N -13.511 -12.976 -16.027 5.510  -0.779 0.578  C19 8I7 10 
8I7 C2  C11 C 0 1 N N N N N N -6.555  -19.248 -16.729 -7.138 -0.712 -1.004 C2  8I7 11 
8I7 C20 C12 C 0 1 N N S N N N -13.625 -14.426 -16.467 4.932  -2.130 0.151  C20 8I7 12 
8I7 C21 C13 C 0 1 N N N N N N -14.467 -14.586 -17.729 6.036  -3.020 -0.467 C21 8I7 13 
8I7 C22 C14 C 0 1 N N N N N N -15.260 -15.869 -17.497 5.882  -2.712 -1.972 C22 8I7 14 
8I7 C23 C15 C 0 1 N N N N N N -6.214  -14.262 -17.815 -1.152 2.196  -2.019 C23 8I7 15 
8I7 C24 C16 C 0 1 N N N N N N -14.316 -15.305 -15.464 3.932  -1.948 -0.969 C24 8I7 16 
8I7 C25 C17 C 0 1 N N N N N N -5.671  -12.012 -18.941 0.178  4.396  -2.322 C25 8I7 17 
8I7 C26 C18 C 0 1 N N N N N N -11.617 -16.412 -20.453 -2.239 -2.148 1.916  C26 8I7 18 
8I7 C3  C19 C 0 1 N N N N N N -6.023  -17.866 -17.087 -8.087 -1.417 -1.975 C3  8I7 19 
8I7 C30 C20 C 0 1 N N N N N N -10.997 -17.616 -19.741 -2.540 -0.649 1.973  C30 8I7 20 
8I7 C31 C21 C 0 1 N N N N N N -12.002 -18.127 -18.708 -1.475 0.053  2.818  C31 8I7 21 
8I7 C32 C22 C 0 1 N N N N N N -10.782 -18.694 -20.794 -3.917 -0.429 2.602  C32 8I7 22 
8I7 C34 C23 C 0 1 N N R N N N -8.226  -12.653 -18.606 1.186  2.463  -0.878 C34 8I7 23 
8I7 C4  C24 C 0 1 N N N N N N -5.440  -20.124 -16.162 -7.615 -0.940 0.432  C4  8I7 24 
8I7 C8  C25 C 0 1 N N N N N N -12.542 -10.739 -16.648 5.009  1.370  1.751  C8  8I7 25 
8I7 C9  C26 C 0 1 N N N N N N -7.865  -18.854 -18.823 -4.769 -0.503 -0.303 C9  8I7 26 
8I7 N10 N1  N 0 1 N N N N N N -9.006  -18.308 -18.389 -3.461 -0.827 -0.286 N10 8I7 27 
8I7 N13 N2  N 0 1 N N N N N N -9.067  -14.890 -18.692 -0.277 0.853  0.123  N13 8I7 28 
8I7 N16 N3  N 0 1 N N N N N N -11.239 -12.780 -16.955 3.391  0.384  0.205  N16 8I7 29 
8I7 N23 N4  N 0 1 N N N N N N -15.237 -16.064 -16.057 4.488  -2.286 -2.145 N23 8I7 30 
8I7 O26 O1  O 0 1 N N N N N N -14.027 -15.300 -14.277 2.794  -1.555 -0.827 O26 8I7 31 
8I7 O29 O2  O 0 1 N N N N N N -7.353  -18.547 -19.898 -5.175 0.414  0.379  O29 8I7 32 
8I7 O33 O3  O 0 1 N N N N N N -10.220 -16.051 -17.157 -0.797 -1.177 -0.604 O33 8I7 33 
8I7 O38 O4  O 0 1 N N N N N N -11.152 -13.125 -19.153 1.832  0.650  1.761  O38 8I7 34 
8I7 O9  O5  O 0 1 N N N N N N -13.865 -10.206 -16.454 5.711  2.039  0.702  O9  8I7 35 
8I7 H1  H1  H 0 1 N N N N N N -7.975  -20.610 -17.603 -5.719 -2.328 -0.869 H1  8I7 36 
8I7 H2  H2  H 0 1 N N N N N N -6.445  -20.429 -18.526 -5.422 -1.197 -2.212 H2  8I7 37 
8I7 H3  H3  H 0 1 N N N N N N -8.976  -16.973 -19.972 -2.835 0.974  0.587  H3  8I7 38 
8I7 H4  H4  H 0 1 N N N N N N -8.802  -14.875 -20.789 0.040  2.049  1.849  H4  8I7 39 
8I7 H5  H5  H 0 1 N N N N N N -7.411  -15.513 -19.848 -1.535 2.302  1.034  H5  8I7 40 
8I7 H6  H6  H 0 1 N N N N N N -8.920  -13.789 -16.889 1.193  0.329  -1.318 H6  8I7 41 
8I7 H7  H7  H 0 1 N N N N N N -7.437  -12.792 -20.747 0.392  4.160  0.476  H7  8I7 42 
8I7 H8  H8  H 0 1 N N N N N N -13.000 -12.334 -18.021 3.948  -0.484 2.031  H8  8I7 43 
8I7 H9  H9  H 0 1 N N N N N N -13.086 -12.930 -15.014 5.909  -0.262 -0.296 H9  8I7 44 
8I7 H10 H10 H 0 1 N N N N N N -14.508 -12.511 -16.027 6.309  -0.937 1.302  H10 8I7 45 
8I7 H11 H11 H 0 1 N N N N N N -7.323  -19.127 -15.951 -7.127 0.356  -1.218 H11 8I7 46 
8I7 H12 H12 H 0 1 N N N N N N -12.617 -14.821 -16.660 4.467  -2.630 1.001  H12 8I7 47 
8I7 H13 H13 H 0 1 N N N N N N -13.824 -14.681 -18.616 7.022  -2.725 -0.107 H13 8I7 48 
8I7 H14 H14 H 0 1 N N N N N N -15.144 -13.728 -17.857 5.847  -4.073 -0.262 H14 8I7 49 
8I7 H15 H15 H 0 1 N N N N N N -16.294 -15.756 -17.856 6.560  -1.910 -2.265 H15 8I7 50 
8I7 H16 H16 H 0 1 N N N N N N -14.784 -16.717 -18.011 6.079  -3.607 -2.562 H16 8I7 51 
8I7 H17 H17 H 0 1 N N N N N N -5.616  -13.926 -16.955 -1.955 2.796  -2.449 H17 8I7 52 
8I7 H18 H18 H 0 1 N N N N N N -7.061  -14.866 -17.458 -0.748 1.530  -2.781 H18 8I7 53 
8I7 H19 H19 H 0 1 N N N N N N -5.586  -14.869 -18.483 -1.544 1.606  -1.191 H19 8I7 54 
8I7 H20 H20 H 0 1 N N N N N N -5.057  -11.792 -18.055 0.609  5.165  -1.682 H20 8I7 55 
8I7 H21 H21 H 0 1 N N N N N N -5.031  -12.414 -19.740 0.859  4.186  -3.147 H21 8I7 56 
8I7 H22 H22 H 0 1 N N N N N N -6.156  -11.088 -19.289 -0.776 4.745  -2.718 H22 8I7 57 
8I7 H23 H23 H 0 1 N N N N N N -11.790 -15.605 -19.726 -1.258 -2.304 1.467  H23 8I7 58 
8I7 H24 H24 H 0 1 N N N N N N -10.932 -16.058 -21.238 -2.247 -2.559 2.925  H24 8I7 59 
8I7 H25 H25 H 0 1 N N N N N N -12.574 -16.708 -20.907 -2.998 -2.648 1.314  H25 8I7 60 
8I7 H26 H26 H 0 1 N N N N N N -5.554  -17.413 -16.202 -8.098 -2.486 -1.761 H26 8I7 61 
8I7 H27 H27 H 0 1 N N N N N N -5.278  -17.957 -17.891 -9.093 -1.013 -1.858 H27 8I7 62 
8I7 H28 H28 H 0 1 N N N N N N -6.854  -17.230 -17.427 -7.748 -1.255 -2.998 H28 8I7 63 
8I7 H29 H29 H 0 1 N N N N N N -12.165 -17.355 -17.941 -0.491 -0.127 2.385  H29 8I7 64 
8I7 H30 H30 H 0 1 N N N N N N -12.956 -18.356 -19.206 -1.674 1.125  2.836  H30 8I7 65 
8I7 H31 H31 H 0 1 N N N N N N -11.608 -19.038 -18.233 -1.502 -0.338 3.835  H31 8I7 66 
8I7 H32 H32 H 0 1 N N N N N N -10.336 -19.583 -20.324 -3.925 -0.840 3.612  H32 8I7 67 
8I7 H33 H33 H 0 1 N N N N N N -11.748 -18.964 -21.245 -4.132 0.639  2.644  H33 8I7 68 
8I7 H34 H34 H 0 1 N N N N N N -10.107 -18.314 -21.575 -4.676 -0.930 2.001  H34 8I7 69 
8I7 H35 H35 H 0 1 N N N N N N -8.506  -11.592 -18.677 2.175  2.874  -1.078 H35 8I7 70 
8I7 H36 H36 H 0 1 N N N N N N -4.991  -19.627 -15.290 -6.938 -0.438 1.123  H36 8I7 71 
8I7 H37 H37 H 0 1 N N N N N N -5.856  -21.095 -15.857 -8.620 -0.536 0.549  H37 8I7 72 
8I7 H38 H38 H 0 1 N N N N N N -4.670  -20.281 -16.932 -7.626 -2.009 0.646  H38 8I7 73 
8I7 H39 H39 H 0 1 N N N N N N -11.964 -10.611 -15.721 4.212  2.013  2.123  H39 8I7 74 
8I7 H40 H40 H 0 1 N Y N N N N -12.050 -10.191 -17.465 5.700  1.141  2.562  H40 8I7 75 
8I7 H41 H41 H 0 1 N N N N N N -9.432  -18.651 -17.552 -3.136 -1.561 -0.831 H41 8I7 76 
8I7 H42 H42 H 0 1 N N N N N N -10.778 -12.873 -16.073 3.627  0.392  -0.736 H42 8I7 77 
8I7 H43 H43 H 0 1 N N N N N N -15.841 -16.694 -15.569 4.028  -2.253 -2.998 H43 8I7 78 
8I7 H44 H44 H 0 1 N N N N N N -13.806 -9.284  -16.235 6.120  2.873  0.972  H44 8I7 79 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8I7 C32 C30 SING N N 1  
8I7 C26 C30 SING N N 2  
8I7 O29 C9  DOUB N N 3  
8I7 C13 C16 SING N N 4  
8I7 C13 N13 SING N N 5  
8I7 C16 C34 SING N N 6  
8I7 C16 C18 SING N N 7  
8I7 C30 C11 SING N N 8  
8I7 C30 C31 SING N N 9  
8I7 O38 C15 DOUB N N 10 
8I7 C11 N10 SING N N 11 
8I7 C11 C12 SING N N 12 
8I7 C25 C18 SING N N 13 
8I7 C9  N10 SING N N 14 
8I7 C9  C1  SING N N 15 
8I7 N13 C12 SING N N 16 
8I7 N13 C14 SING N N 17 
8I7 C34 C18 SING N N 18 
8I7 C34 C14 SING N N 19 
8I7 C18 C23 SING N N 20 
8I7 C12 O33 DOUB N N 21 
8I7 C15 C14 SING N N 22 
8I7 C15 N16 SING N N 23 
8I7 C1  C2  SING N N 24 
8I7 C21 C22 SING N N 25 
8I7 C21 C20 SING N N 26 
8I7 C22 N23 SING N N 27 
8I7 C3  C2  SING N N 28 
8I7 C17 N16 SING N N 29 
8I7 C17 C8  SING N N 30 
8I7 C17 C19 SING N N 31 
8I7 C2  C4  SING N N 32 
8I7 C8  O9  SING N N 33 
8I7 C20 C19 SING N N 34 
8I7 C20 C24 SING N N 35 
8I7 N23 C24 SING N N 36 
8I7 C24 O26 DOUB N N 37 
8I7 C1  H1  SING N N 38 
8I7 C1  H2  SING N N 39 
8I7 C11 H3  SING N N 40 
8I7 C13 H4  SING N N 41 
8I7 C13 H5  SING N N 42 
8I7 C14 H6  SING N N 43 
8I7 C16 H7  SING N N 44 
8I7 C17 H8  SING N N 45 
8I7 C19 H9  SING N N 46 
8I7 C19 H10 SING N N 47 
8I7 C2  H11 SING N N 48 
8I7 C20 H12 SING N N 49 
8I7 C21 H13 SING N N 50 
8I7 C21 H14 SING N N 51 
8I7 C22 H15 SING N N 52 
8I7 C22 H16 SING N N 53 
8I7 C23 H17 SING N N 54 
8I7 C23 H18 SING N N 55 
8I7 C23 H19 SING N N 56 
8I7 C25 H20 SING N N 57 
8I7 C25 H21 SING N N 58 
8I7 C25 H22 SING N N 59 
8I7 C26 H23 SING N N 60 
8I7 C26 H24 SING N N 61 
8I7 C26 H25 SING N N 62 
8I7 C3  H26 SING N N 63 
8I7 C3  H27 SING N N 64 
8I7 C3  H28 SING N N 65 
8I7 C31 H29 SING N N 66 
8I7 C31 H30 SING N N 67 
8I7 C31 H31 SING N N 68 
8I7 C32 H32 SING N N 69 
8I7 C32 H33 SING N N 70 
8I7 C32 H34 SING N N 71 
8I7 C34 H35 SING N N 72 
8I7 C4  H36 SING N N 73 
8I7 C4  H37 SING N N 74 
8I7 C4  H38 SING N N 75 
8I7 C8  H39 SING N N 76 
8I7 C8  H40 SING N N 77 
8I7 N10 H41 SING N N 78 
8I7 N16 H42 SING N N 79 
8I7 N23 H43 SING N N 80 
8I7 O9  H44 SING N N 81 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8I7 SMILES           ACDLabs              12.01 "CC1(C)C2C(C(=O)NC(CC3CCNC3=O)CO)N(CC21)C(=O)C(NC(=O)CC(C)C)C(C)(C)C"                                                                                                                                                    
8I7 InChI            InChI                1.03  "InChI=1S/C26H44N4O5/c1-14(2)10-18(32)29-21(25(3,4)5)24(35)30-12-17-19(26(17,6)7)20(30)23(34)28-16(13-31)11-15-8-9-27-22(15)33/h14-17,19-21,31H,8-13H2,1-7H3,(H,27,33)(H,28,34)(H,29,32)/t15-,16-,17-,19-,20-,21+/m0/s1" 
8I7 InChIKey         InChI                1.03  YJDABKUOTKRKDF-RZCQQDKOSA-N                                                                                                                                                                                              
8I7 SMILES_CANONICAL CACTVS               3.385 "CC(C)CC(=O)N[C@H](C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@H](CO)C[C@@H]3CCNC3=O)C2(C)C)C(C)(C)C"                                                                                                                            
8I7 SMILES           CACTVS               3.385 "CC(C)CC(=O)N[CH](C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](CO)C[CH]3CCNC3=O)C2(C)C)C(C)(C)C"                                                                                                                                    
8I7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)CC(=O)N[C@H](C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](C[C@@H]3CCNC3=O)CO)C2(C)C)C(C)(C)C"                                                                                                                           
8I7 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(=O)NC(C(=O)N1CC2C(C1C(=O)NC(CC3CCNC3=O)CO)C2(C)C)C(C)(C)C"                                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
8I7 "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S,5S)-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(3-methylbutanoyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide"                                               
8I7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-3-[(2~{S})-3,3-dimethyl-2-(3-methylbutanoylamino)butanoyl]-6,6-dimethyl-~{N}-[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8I7 "Create component" 2021-09-16 RCSB 
8I7 "Initial release"  2022-07-27 RCSB 
8I7 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            8I7 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C8 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
