data_627
#

_chem_comp.id                                   627
_chem_comp.name                                 "N-[(3E)-5-[(2R)-2-METHOXY-2-PHENYLACETYL]PYRROLO[3,4-C]PYRAZOL-3(5H)-YLIDENE]-4-(4-METHYLPIPERAZIN-1-YL)BENZAMIDE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H30 N6 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Danusertib; PHA-739358"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-09-08
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       474.555
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    627
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2J50
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
627  N1    N1    N  0  1  N  N  N  26.175  36.703  24.373    3.677  -0.574  -0.521  N1    627   1  
627  N2    N2    N  0  1  Y  N  N  27.904  39.428  26.148    2.180   2.846  -0.891  N2    627   2  
627  C3    C3    C  0  1  Y  N  N  25.805  39.818  26.357    0.490   1.507  -0.471  C3    627   3  
627  N4    N4    N  0  1  Y  N  N  27.048  40.278  26.668    0.795   2.760  -0.709  N4    627   4  
627  N5    N5    N  0  1  N  N  N  24.732  40.539  26.792   -0.795   1.003  -0.234  N5    627   5  
627  C6    C6    C  0  1  N  N  N  23.386  40.272  26.620   -1.856   1.834  -0.240  C6    627   6  
627  C7    C7    C  0  1  Y  N  N  22.397  41.273  27.197   -3.210   1.303   0.009  C7    627   7  
627  O8    O8    O  0  1  N  N  N  22.965  39.287  26.040   -1.698   3.021  -0.450  O8    627   8  
627  C9    C9    C  0  1  Y  N  N  22.786  42.443  27.893   -4.312   2.164   0.004  C9    627   9  
627  C10   C10   C  0  1  Y  N  N  21.820  43.346  28.416   -5.573   1.666   0.236  C10   627  10  
627  C11   C11   C  0  1  Y  N  N  20.027  41.922  27.548   -4.658  -0.554   0.477  C11   627  11  
627  C12   C12   C  0  1  Y  N  N  20.991  41.030  27.032   -3.394  -0.062   0.245  C12   627  12  
627  C13   C13   C  0  1  Y  N  N  27.307  38.442  25.513    2.698   1.605  -0.754  C13   627  13  
627  C14   C14   C  0  1  Y  N  N  25.979  38.624  25.605    1.681   0.758  -0.494  C14   627  14  
627  C15   C15   C  0  1  N  N  N  25.159  37.588  24.928    2.223  -0.640  -0.335  C15   627  15  
627  C16   C16   C  0  1  N  N  N  27.523  37.189  24.722    3.994   0.834  -0.787  C16   627  16  
627  N17   N17   N  0  1  N  N  N  19.350  44.015  28.791   -7.029  -0.194   0.711  N17   627  17  
627  C18   C18   C  0  1  N  N  N  18.127  44.113  27.893   -6.992  -1.645   0.940  C18   627  18  
627  C19   C19   C  0  1  N  N  N  17.801  45.468  27.186   -8.400  -2.143   1.272  C19   627  19  
627  N20   N20   N  0  1  N  N  N  18.072  46.650  28.024   -9.308  -1.811   0.165  N20   627  20  
627  C21   C21   C  0  1  N  N  N  19.473  46.641  28.458   -9.345  -0.359  -0.064  C21   627  21  
627  C22   C22   C  0  1  N  N  N  19.861  45.354  29.244   -7.937   0.138  -0.396  C22   627  22  
627  C23   C23   C  0  1  N  N  N  17.748  47.891  27.314   -8.929  -2.527  -1.060  C23   627  23  
627  C24   C24   C  0  1  Y  N  N  20.396  43.126  28.266   -5.753   0.306   0.476  C24   627  24  
627  C25   C25   C  0  1  N  N  N  25.994  35.527  23.583    4.548  -1.600  -0.456  C25   627  25  
627  O26   O26   O  0  1  N  N  N  26.951  34.878  23.173    4.161  -2.704  -0.134  O26   627  26  
627  C27   C27   C  0  1  Y  N  N  23.878  36.159  22.263    6.642  -0.559   0.308  C27   627  27  
627  C28   C28   C  0  1  Y  N  N  22.587  36.700  22.501    6.914   0.780   0.100  C28   627  28  
627  C29   C29   C  0  1  Y  N  N  24.616  36.640  21.135    6.953  -1.147   1.520  C29   627  29  
627  C31   C31   C  0  1  Y  N  N  22.049  37.689  21.644    7.497   1.531   1.103  C31   627  30  
627  C33   C33   C  0  1  Y  N  N  24.085  37.624  20.280    7.536  -0.396   2.523  C33   627  31  
627  C20   C20   C  0  1  N  N  R  24.493  35.094  23.202    6.002  -1.377  -0.784  C20   627  32  
627  C35   C35   C  0  1  Y  N  N  22.796  38.158  20.529    7.807   0.944   2.315  C35   627  33  
627  C36   C36   C  0  1  N  N  N  23.337  33.133  22.341    7.767  -2.641  -1.798  C36   627  34  
627  O34   O34   O  0  1  N  N  N  24.581  33.790  22.556    6.666  -2.638  -0.887  O34   627  35  
627  H15   H15   H  0  1  N  N  N  24.537  38.028  24.134    1.783  -1.296  -1.086  H15   627  36  
627  H16   H16   H  0  1  N  N  N  28.056  36.441  25.326    4.669   1.212  -0.019  H16   627  37  
627  H9    H9    H  0  1  N  N  N  23.836  42.654  28.029   -4.173   3.219  -0.182  H9    627  38  
627  H12   H12   H  0  1  N  N  N  20.665  40.147  26.502   -2.546  -0.730   0.245  H12   627  39  
627  H10   H10   H  0  1  N  N  N  22.159  44.226  28.943   -6.425   2.330   0.232  H10   627  40  
627  H11   H11   H  0  1  N  N  N  18.980  41.700  27.403   -4.801  -1.609   0.659  H11   627  41  
627  H181  H181  H  0  0  N  N  N  18.250  43.360  27.101   -6.631  -2.146   0.041  H181  627  42  
627  H182  H182  H  0  0  N  N  N  17.254  43.856  28.511   -6.323  -1.865   1.772  H182  627  43  
627  H221  H221  H  0  0  N  N  N  19.511  45.495  30.277   -7.957   1.219  -0.537  H221  627  44  
627  H222  H222  H  0  0  N  N  N  20.959  45.295  29.234   -7.587  -0.342  -1.310  H222  627  45  
627  H191  H191  H  0  0  N  N  N  18.412  45.540  26.274   -8.380  -3.224   1.413  H191  627  46  
627  H192  H192  H  0  0  N  N  N  16.735  45.471  26.914   -8.750  -1.663   2.186  H192  627  47  
627  H211  H211  H  0  0  N  N  N  20.116  46.715  27.568  -10.014  -0.139  -0.896  H211  627  48  
627  H212  H212  H  0  0  N  N  N  19.644  47.512  29.107   -9.705   0.141   0.835  H212  627  49  
627  H231  H231  H  0  0  N  N  N  17.961  48.752  27.964   -8.975  -3.601  -0.881  H231  627  50  
627  H232  H232  H  0  0  N  N  N  18.358  47.961  26.401   -9.617  -2.263  -1.863  H232  627  51  
627  H233  H233  H  0  0  N  N  N  16.682  47.891  27.043   -7.915  -2.249  -1.345  H233  627  52  
627  H20   H20   H  0  1  N  N  N  23.898  35.032  24.125    6.083  -0.844  -1.731  H20   627  53  
627  H28   H28   H  0  1  N  N  N  22.010  36.353  23.345    6.672   1.240  -0.847  H28   627  54  
627  H29   H29   H  0  1  N  N  N  25.599  36.240  20.936    6.740  -2.193   1.683  H29   627  55  
627  H31   H31   H  0  1  N  N  N  21.065  38.090  21.838    7.710   2.578   0.940  H31   627  56  
627  H33   H33   H  0  1  N  N  N  24.660  37.972  19.434    7.778  -0.855   3.470  H33   627  57  
627  H35   H35   H  0  1  N  N  N  22.385  38.915  19.877    8.263   1.530   3.099  H35   627  58  
627  H361  H361  H  0  0  N  N  N  23.513  32.164  21.851    8.217  -3.634  -1.819  H361  627  59  
627  H362  H362  H  0  0  N  N  N  22.837  32.970  23.307    7.414  -2.381  -2.796  H362  627  60  
627  H363  H363  H  0  0  N  N  N  22.699  33.758  21.699    8.509  -1.912  -1.474  H363  627  61  
627  HN5   HN5   H  0  1  N  N  N  24.947  41.371  27.303   -0.922   0.056  -0.067  HN5   627  62  
627  HN2   HN2   H  0  1  N  N  N  28.897  39.520  26.226    2.681   3.655  -1.082  HN2   627  63  
627  H151  H151  H  0  0  N  N  N  24.516  37.057  25.645    1.995  -1.014   0.664  H151  627  64  
627  H161  H161  H  0  0  N  N  N  28.101  37.405  23.811    4.457   0.930  -1.769  H161  627  65  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
627  N1   C15   SING  N  N   1  
627  N1   C16   SING  N  N   2  
627  N1   C25   SING  N  N   3  
627  N2   N4    SING  Y  N   4  
627  N2   HN2   SING  N  N   5  
627  N2   C13   SING  Y  N   6  
627  C3   N4    DOUB  Y  N   7  
627  C3   N5    SING  N  N   8  
627  C3   C14   SING  Y  N   9  
627  N5   C6    SING  N  N  10  
627  N5   HN5   SING  N  N  11  
627  C6   C7    SING  N  N  12  
627  C6   O8    DOUB  N  N  13  
627  C7   C9    SING  Y  N  14  
627  C7   C12   DOUB  Y  N  15  
627  C9   C10   DOUB  Y  N  16  
627  C9   H9    SING  N  N  17  
627  C10  C24   SING  Y  N  18  
627  C10  H10   SING  N  N  19  
627  C11  C12   SING  Y  N  20  
627  C11  C24   DOUB  Y  N  21  
627  C11  H11   SING  N  N  22  
627  C12  H12   SING  N  N  23  
627  C13  C14   DOUB  Y  N  24  
627  C13  C16   SING  N  N  25  
627  C14  C15   SING  N  N  26  
627  C15  H15   SING  N  N  27  
627  C15  H151  SING  N  N  28  
627  C16  H16   SING  N  N  29  
627  C16  H161  SING  N  N  30  
627  N17  C18   SING  N  N  31  
627  N17  C22   SING  N  N  32  
627  N17  C24   SING  N  N  33  
627  C18  C19   SING  N  N  34  
627  C18  H181  SING  N  N  35  
627  C18  H182  SING  N  N  36  
627  C19  N20   SING  N  N  37  
627  C19  H191  SING  N  N  38  
627  C19  H192  SING  N  N  39  
627  N20  C21   SING  N  N  40  
627  N20  C23   SING  N  N  41  
627  C21  C22   SING  N  N  42  
627  C21  H211  SING  N  N  43  
627  C21  H212  SING  N  N  44  
627  C22  H221  SING  N  N  45  
627  C22  H222  SING  N  N  46  
627  C23  H231  SING  N  N  47  
627  C23  H232  SING  N  N  48  
627  C23  H233  SING  N  N  49  
627  C25  O26   DOUB  N  N  50  
627  C25  C20   SING  N  N  51  
627  C27  C28   SING  Y  N  52  
627  C27  C29   DOUB  Y  N  53  
627  C27  C20   SING  N  N  54  
627  C28  C31   DOUB  Y  N  55  
627  C28  H28   SING  N  N  56  
627  C29  C33   SING  Y  N  57  
627  C29  H29   SING  N  N  58  
627  C31  C35   SING  Y  N  59  
627  C31  H31   SING  N  N  60  
627  C33  C35   DOUB  Y  N  61  
627  C33  H33   SING  N  N  62  
627  C20  O34   SING  N  N  63  
627  C20  H20   SING  N  N  64  
627  C35  H35   SING  N  N  65  
627  C36  O34   SING  N  N  66  
627  C36  H361  SING  N  N  67  
627  C36  H362  SING  N  N  68  
627  C36  H363  SING  N  N  69  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
627  SMILES            ACDLabs               10.04  "O=C(n4cc3c(N=N/C3=N/C(=O)c1ccc(cc1)N2CCN(C)CC2)c4)C(OC)c5ccccc5"  
627  InChI             InChI                 1.03   "InChI=1S/C26H30N6O3/c1-30-12-14-31(15-13-30)20-10-8-19(9-11-20)25(33)27-24-21-16-32(17-22(21)28-29-24)26(34)23(35-2)18-6-4-3-5-7-18/h3-11,23H,12-17H2,1-2H3,(H2,27,28,29,33)/t23-/m1/s1"  
627  InChIKey          InChI                 1.03   XKFTZKGMDDZMJI-HSZRJFAPSA-N  
627  SMILES_CANONICAL  CACTVS                3.385  "CO[C@@H](C(=O)N1Cc2[nH]nc(NC(=O)c3ccc(cc3)N4CCN(C)CC4)c2C1)c5ccccc5"  
627  SMILES            CACTVS                3.385  "CO[CH](C(=O)N1Cc2[nH]nc(NC(=O)c3ccc(cc3)N4CCN(C)CC4)c2C1)c5ccccc5"  
627  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CN1CCN(CC1)c2ccc(cc2)C(=O)Nc3c4c([nH]n3)CN(C4)C(=O)[C@@H](c5ccccc5)OC"  
627  SMILES            "OpenEye OEToolkits"  1.7.6  "CN1CCN(CC1)c2ccc(cc2)C(=O)Nc3c4c([nH]n3)CN(C4)C(=O)C(c5ccccc5)OC"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
627  "SYSTEMATIC NAME"  ACDLabs               10.04  "N-[(3E)-5-[(2R)-2-methoxy-2-phenylacetyl]pyrrolo[3,4-c]pyrazol-3(5H)-ylidene]-4-(4-methylpiperazin-1-yl)benzamide"  
627  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "N-[5-[(2R)-2-methoxy-2-phenyl-ethanoyl]-4,6-dihydro-1H-pyrrolo[3,4-c]pyrazol-3-yl]-4-(4-methylpiperazin-1-yl)benzamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
627  "Create component"    2006-09-08  EBI   
627  "Modify descriptor"   2011-06-04  EBI   
627  "Modify synonyms"     2015-07-22  EBI   
627  "Modify value order"  2015-07-22  EBI   
627  "Modify synonyms"     2020-06-05  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  627  Danusertib  ?  ?  
2  627  PHA-739358  ?  ?  
##
