data_5Z7
#

_chem_comp.id                                   5Z7
_chem_comp.name                                 "6-[4-(4-bromo-3-chlorophenyl)piperazine-1-carbonyl]pyrimidine-2,4(1H,3H)-dione"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H14 Br Cl N4 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-07-28
_chem_comp.pdbx_modified_date                   2021-11-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       413.654
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5Z7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7RMB
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5Z7  C1    C1   C   0  1  N  N  N  14.672  -1.652  17.189  -4.635   0.427  -0.213  C1    5Z7   1  
5Z7  C10   C2   C   0  1  Y  N  N   9.029   0.054  19.360   1.517   0.245   0.772  C10   5Z7   2  
5Z7  C11   C3   C   0  1  Y  N  N   8.137  -0.672  18.560   2.332   1.010  -0.054  C11   5Z7   3  
5Z7  C12   C4   C   0  1  Y  N  N   6.768  -0.465  18.674   3.635   0.618  -0.291  C12   5Z7   4  
5Z7  C13   C5   C   0  1  Y  N  N   6.259   0.456  19.574   4.129  -0.536   0.294  C13   5Z7   5  
5Z7  C14   C6   C   0  1  Y  N  N   7.145   1.181  20.365   3.320  -1.299   1.117  C14   5Z7   6  
5Z7  C15   C7   C   0  1  Y  N  N   8.503   0.983  20.269   2.016  -0.912   1.357  C15   5Z7   7  
5Z7  C17   C8   C   0  1  N  N  N  15.931  -3.707  17.452  -5.578  -1.400  -1.394  C17   5Z7   8  
5Z7  C2    C9   C   0  1  N  N  N  14.220  -0.472  18.005  -3.617   1.503  -0.130  C2    5Z7   9  
5Z7  C20   C10  C   0  1  N  N  N  14.952  -3.070  15.288  -6.543  -0.802   0.650  C20   5Z7  10  
5Z7  C22   C11  C   0  1  N  N  N  14.425  -1.866  15.882  -5.551   0.272   0.778  C22   5Z7  11  
5Z7  C5    C12  C   0  1  N  N  N  12.219  -1.695  18.913  -1.499   2.383   0.739  C5    5Z7  12  
5Z7  C6    C13  C   0  1  N  N  N  10.860  -1.241  18.431  -0.117   1.886   0.303  C6    5Z7  13  
5Z7  C8    C14  C   0  1  N  N  N  11.310   1.007  19.253  -0.745  -0.428   0.672  C8    5Z7  14  
5Z7  C9    C15  C   0  1  N  N  N  12.727   0.577  19.611  -2.162  -0.023   1.122  C9    5Z7  15  
5Z7  N16   N1   N   0  1  N  N  N  15.398  -2.543  17.923  -4.664  -0.420  -1.300  N16   5Z7  16  
5Z7  N19   N2   N   0  1  N  N  N  15.674  -3.902  16.129  -6.503  -1.599  -0.438  N19   5Z7  17  
5Z7  N4    N3   N   0  1  N  N  N  13.153  -0.574  18.812  -2.472   1.296   0.549  N4    5Z7  18  
5Z7  N7    N4   N   0  1  N  N  N  10.408  -0.139  19.284   0.200   0.642   1.018  N7    5Z7  19  
5Z7  O18   O1   O   0  1  N  N  N  16.575  -4.483  18.137  -5.570  -2.126  -2.369  O18   5Z7  20  
5Z7  O21   O2   O   0  1  N  N  N  14.813  -3.410  14.135  -7.381  -0.976   1.515  O21   5Z7  21  
5Z7  O3    O3   O   0  1  N  N  N  14.887   0.546  17.890  -3.816   2.571  -0.675  O3    5Z7  22  
5Z7  BR24  BR1  BR  0  0  N  N  N   4.396   0.753  19.742   5.914  -1.071  -0.032  BR24  5Z7  23  
5Z7  CL23  CL1  CL  0  0  N  N  N   5.684  -1.385  17.656   4.654   1.572  -1.323  CL23  5Z7  24  
5Z7  H1    H1   H   0  1  N  N  N   8.515  -1.395  17.852   1.946   1.909  -0.511  H1    5Z7  25  
5Z7  H2    H2   H   0  1  N  N  N   6.761   1.909  21.064   3.708  -2.199   1.571  H2    5Z7  26  
5Z7  H3    H3   H   0  1  N  N  N   9.171   1.549  20.901   1.385  -1.508   1.999  H3    5Z7  27  
5Z7  H4    H4   H   0  1  N  N  N  13.852  -1.160  15.299  -5.549   0.923   1.640  H4    5Z7  28  
5Z7  H5    H5   H   0  1  N  N  N  12.149  -2.025  19.960  -1.471   2.670   1.790  H5    5Z7  29  
5Z7  H6    H6   H   0  1  N  N  N  12.573  -2.529  18.289  -1.788   3.241   0.133  H6    5Z7  30  
5Z7  H7    H7   H   0  1  N  N  N  10.932  -0.898  17.388  -0.120   1.698  -0.771  H7    5Z7  31  
5Z7  H8    H8   H   0  1  N  N  N  10.146  -2.076  18.494   0.632   2.642   0.539  H8    5Z7  32  
5Z7  H9    H9   H   0  1  N  N  N  11.308   1.443  18.243  -0.452  -1.349   1.174  H9    5Z7  33  
5Z7  H10   H10  H   0  1  N  N  N  10.965   1.759  19.978  -0.739  -0.583  -0.407  H10   5Z7  34  
5Z7  H11   H11  H   0  1  N  N  N  12.760   0.305  20.676  -2.883  -0.759   0.766  H11   5Z7  35  
5Z7  H12   H12  H   0  1  N  N  N  13.414   1.416  19.425  -2.199   0.030   2.210  H12   5Z7  36  
5Z7  H13   H13  H   0  1  N  N  N  15.552  -2.325  18.887  -4.013  -0.307  -2.010  H13   5Z7  37  
5Z7  H14   H14  H   0  1  N  N  N  16.046  -4.735  15.720  -7.152  -2.313  -0.536  H14   5Z7  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5Z7  O21   C20   DOUB  N  N   1  
5Z7  C20   C22   SING  N  N   2  
5Z7  C20   N19   SING  N  N   3  
5Z7  C22   C1    DOUB  N  N   4  
5Z7  N19   C17   SING  N  N   5  
5Z7  C1    N16   SING  N  N   6  
5Z7  C1    C2    SING  N  N   7  
5Z7  C17   N16   SING  N  N   8  
5Z7  C17   O18   DOUB  N  N   9  
5Z7  CL23  C12   SING  N  N  10  
5Z7  O3    C2    DOUB  N  N  11  
5Z7  C2    N4    SING  N  N  12  
5Z7  C6    C5    SING  N  N  13  
5Z7  C6    N7    SING  N  N  14  
5Z7  C11   C12   DOUB  Y  N  15  
5Z7  C11   C10   SING  Y  N  16  
5Z7  C12   C13   SING  Y  N  17  
5Z7  N4    C5    SING  N  N  18  
5Z7  N4    C9    SING  N  N  19  
5Z7  C8    N7    SING  N  N  20  
5Z7  C8    C9    SING  N  N  21  
5Z7  N7    C10   SING  N  N  22  
5Z7  C10   C15   DOUB  Y  N  23  
5Z7  C13   BR24  SING  N  N  24  
5Z7  C13   C14   DOUB  Y  N  25  
5Z7  C15   C14   SING  Y  N  26  
5Z7  C11   H1    SING  N  N  27  
5Z7  C14   H2    SING  N  N  28  
5Z7  C15   H3    SING  N  N  29  
5Z7  C22   H4    SING  N  N  30  
5Z7  C5    H5    SING  N  N  31  
5Z7  C5    H6    SING  N  N  32  
5Z7  C6    H7    SING  N  N  33  
5Z7  C6    H8    SING  N  N  34  
5Z7  C8    H9    SING  N  N  35  
5Z7  C8    H10   SING  N  N  36  
5Z7  C9    H11   SING  N  N  37  
5Z7  C9    H12   SING  N  N  38  
5Z7  N16   H13   SING  N  N  39  
5Z7  N19   H14   SING  N  N  40  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5Z7  SMILES            ACDLabs               12.01  "O=C(C1=CC(=O)NC(=O)N1)N1CCN(CC1)c1ccc(Br)c(Cl)c1"  
5Z7  InChI             InChI                 1.03   "InChI=1S/C15H14BrClN4O3/c16-10-2-1-9(7-11(10)17)20-3-5-21(6-4-20)14(23)12-8-13(22)19-15(24)18-12/h1-2,7-8H,3-6H2,(H2,18,19,22,24)"  
5Z7  InChIKey          InChI                 1.03   LMYRFZVTGXUSKU-UHFFFAOYSA-N  
5Z7  SMILES_CANONICAL  CACTVS                3.385  "Clc1cc(ccc1Br)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3"  
5Z7  SMILES            CACTVS                3.385  "Clc1cc(ccc1Br)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3"  
5Z7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)Cl)Br"  
5Z7  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)Cl)Br"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5Z7  "SYSTEMATIC NAME"  ACDLabs               12.01  "6-[4-(4-bromo-3-chlorophenyl)piperazine-1-carbonyl]pyrimidine-2,4(1H,3H)-dione"  
5Z7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "6-[4-(4-bromanyl-3-chloranyl-phenyl)piperazin-1-yl]carbonyl-1~{H}-pyrimidine-2,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5Z7  "Create component"  2021-07-28  RCSB  
5Z7  "Initial release"   2021-11-10  RCSB  
##
