data_5X7
# 
_chem_comp.id                                    5X7 
_chem_comp.name                                  "(2R,3R,4R,5S)-1-{[4-({4-[(2R,6S)-2,6-dimethylmorpholin-4-yl]-2-nitroanilino}methyl)phenyl]methyl}-2-(hydroxymethyl)piperidine-3,4,5-triol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H36 N4 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-07-24 
_chem_comp.pdbx_modified_date                    2023-02-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        516.587 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5X7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7RD2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5X7 N1  N1  N 0  1 N N N -13.225 -33.275 -39.211 6.890   0.526  -0.132 N1  5X7 1  
5X7 N3  N2  N 0  1 N N N -10.729 -38.531 -38.924 1.413   -0.445 0.140  N3  5X7 2  
5X7 C4  C1  C 0  1 N N N -15.669 -31.673 -36.771 9.053   2.507  0.821  C4  5X7 3  
5X7 C5  C2  C 0  1 N N N -13.828 -32.714 -37.981 7.161   1.862  -0.682 C5  5X7 4  
5X7 C6  C3  C 0  1 Y N N -12.582 -34.584 -39.187 5.513   0.282  -0.064 C6  5X7 5  
5X7 C7  C4  C 0  1 Y N N -11.471 -34.784 -39.887 5.046   -0.927 0.435  C7  5X7 6  
5X7 C8  C5  C 0  1 Y N N -10.823 -36.014 -39.861 3.688   -1.168 0.503  C8  5X7 7  
5X7 C10 C6  C 0  1 N N N -9.296  -38.781 -38.745 0.463   0.610  -0.219 C10 5X7 8  
5X7 C13 C7  C 0  1 Y N N -7.371  -38.280 -35.535 -2.892  -0.237 1.293  C13 5X7 9  
5X7 C15 C8  C 0  1 Y N N -9.342  -39.562 -34.943 -2.873  -0.986 -0.982 C15 5X7 10 
5X7 C17 C9  C 0  1 N N N -7.635  -38.976 -32.994 -4.932  -1.370 0.388  C17 5X7 11 
5X7 C20 C10 C 0  1 N N R -6.697  -42.394 -31.829 -8.203  0.247  -0.543 C20 5X7 12 
5X7 C21 C11 C 0  1 N N R -5.448  -42.611 -32.598 -8.144  1.453  0.400  C21 5X7 13 
5X7 C22 C12 C 0  1 N N S -4.720  -41.305 -32.900 -6.700  1.954  0.485  C22 5X7 14 
5X7 C24 C13 C 0  1 Y N N -12.478 -36.867 -38.302 3.256   1.010  -0.421 C24 5X7 15 
5X7 C26 C14 C 0  1 N N N -13.699 -32.557 -40.477 7.564   -0.488 -0.956 C26 5X7 16 
5X7 C1  C15 C 0  1 N N N -15.501 -31.280 -41.720 9.612   -0.786 0.448  C1  5X7 17 
5X7 C11 C16 C 0  1 Y N N -8.907  -38.849 -37.265 -0.945  0.095  -0.061 C11 5X7 18 
5X7 C12 C17 C 0  1 Y N N -7.759  -38.252 -36.873 -1.601  0.235  1.148  C12 5X7 19 
5X7 C14 C18 C 0  1 Y N N -8.156  -38.937 -34.564 -3.527  -0.850 0.229  C14 5X7 20 
5X7 C16 C19 C 0  1 Y N N -9.735  -39.529 -36.313 -1.584  -0.508 -1.128 C16 5X7 21 
5X7 C18 C20 C 0  1 N N R -7.607  -41.360 -32.516 -7.257  -0.842 -0.031 C18 5X7 22 
5X7 C19 C21 C 0  1 N N N -8.821  -41.119 -31.629 -7.298  -2.040 -0.981 C19 5X7 23 
5X7 C2  C22 C 0  1 N N S -15.125 -32.277 -40.496 9.075   -0.271 -0.891 C2  5X7 24 
5X7 C23 C23 C 0  1 N N N -5.685  -40.272 -33.576 -5.798  0.816  0.968  C23 5X7 25 
5X7 C25 C24 C 0  1 Y N N -13.101 -35.613 -38.363 4.614   1.250  -0.489 C25 5X7 26 
5X7 C3  C25 C 0  1 N N R -15.256 -32.447 -38.071 8.660   2.146  -0.615 C3  5X7 27 
5X7 C9  C26 C 0  1 Y N N -11.352 -37.106 -39.015 2.789   -0.201 0.072  C9  5X7 28 
5X7 N2  N3  N 1  1 N N N -9.649  -36.118 -40.653 3.191   -2.457 1.033  N2  5X7 29 
5X7 N4  N4  N 0  1 N N N -6.847  -40.093 -32.707 -5.889  -0.313 0.032  N4  5X7 30 
5X7 O1  O1  O 0  1 N N N -15.537 -31.661 -39.208 9.437   1.075  -1.106 O1  5X7 31 
5X7 O2  O2  O -1 1 N N N -8.933  -37.333 -40.794 3.756   -2.988 1.973  O2  5X7 32 
5X7 O3  O3  O 0  1 N N N -9.183  -34.949 -41.297 2.216   -2.987 0.531  O3  5X7 33 
5X7 O4  O4  O 0  1 N N N -8.364  -40.551 -30.450 -6.960  -1.612 -2.302 O4  5X7 34 
5X7 O5  O5  O 0  1 N N N -7.380  -43.618 -31.704 -9.538  -0.261 -0.585 O5  5X7 35 
5X7 O6  O6  O 0  1 N N N -4.612  -43.472 -31.789 -8.982  2.494  -0.105 O6  5X7 36 
5X7 O7  O7  O 0  1 N N N -3.537  -41.521 -33.728 -6.628  3.045  1.406  O7  5X7 37 
5X7 H1  H1  H 0  1 N N N -11.182 -38.978 -38.153 1.087   -1.314 0.425  H1  5X7 38 
5X7 H2  H2  H 0  1 N N N -15.447 -32.292 -35.889 8.812   1.675  1.483  H2  5X7 39 
5X7 H3  H3  H 0  1 N N N -15.104 -30.731 -36.710 10.123  2.708  0.865  H3  5X7 40 
5X7 H4  H4  H 0  1 N N N -16.746 -31.452 -36.802 8.502   3.394  1.136  H4  5X7 41 
5X7 H5  H5  H 0  1 N N N -13.664 -33.430 -37.162 6.826   1.901  -1.719 H5  5X7 42 
5X7 H6  H6  H 0  1 N N N -13.316 -31.768 -37.749 6.620   2.610  -0.101 H6  5X7 43 
5X7 H7  H7  H 0  1 N N N -11.066 -33.981 -40.484 5.745   -1.679 0.770  H7  5X7 44 
5X7 H8  H8  H 0  1 N N N -9.040  -39.737 -39.224 0.610   1.470  0.436  H8  5X7 45 
5X7 H9  H9  H 0  1 N N N -8.731  -37.968 -39.224 0.626   0.910  -1.254 H9  5X7 46 
5X7 H10 H10 H 0  1 N N N -6.455  -37.791 -35.237 -3.403  -0.131 2.238  H10 5X7 47 
5X7 H11 H11 H 0  1 N N N -9.955  -40.064 -34.209 -3.369  -1.465 -1.813 H11 5X7 48 
5X7 H12 H12 H 0  1 N N N -7.043  -38.070 -32.799 -5.079  -2.228 -0.268 H12 5X7 49 
5X7 H13 H13 H 0  1 N N N -8.514  -38.989 -32.333 -5.093  -1.672 1.423  H13 5X7 50 
5X7 H14 H14 H 0  1 N N N -6.436  -42.009 -30.832 -7.898  0.553  -1.544 H14 5X7 51 
5X7 H15 H15 H 0  1 N N N -5.688  -43.110 -33.548 -8.488  1.157  1.391  H15 5X7 52 
5X7 H16 H16 H 0  1 N N N -4.400  -40.872 -31.941 -6.371  2.286  -0.499 H16 5X7 53 
5X7 H17 H17 H 0  1 N N N -12.898 -37.646 -37.683 2.557   1.763  -0.752 H17 5X7 54 
5X7 H18 H18 H 0  1 N N N -13.459 -33.189 -41.344 7.319   -1.482 -0.580 H18 5X7 55 
5X7 H19 H19 H 0  1 N N N -13.158 -31.603 -40.557 7.225   -0.399 -1.989 H19 5X7 56 
5X7 H20 H20 H 0  1 N N N -16.583 -31.083 -41.714 9.395   -1.850 0.541  H20 5X7 57 
5X7 H21 H21 H 0  1 N N N -14.955 -30.332 -41.602 10.690  -0.630 0.491  H21 5X7 58 
5X7 H22 H22 H 0  1 N N N -15.219 -31.749 -42.674 9.133   -0.245 1.264  H22 5X7 59 
5X7 H23 H23 H 0  1 N N N -7.139  -37.750 -37.601 -1.105  0.714  1.979  H23 5X7 60 
5X7 H24 H24 H 0  1 N N N -10.648 -40.012 -36.630 -1.075  -0.609 -2.075 H24 5X7 61 
5X7 H25 H25 H 0  1 N N N -7.935  -41.753 -33.490 -7.571  -1.157 0.964  H25 5X7 62 
5X7 H26 H26 H 0  1 N N N -9.523  -40.435 -32.129 -6.582  -2.792 -0.649 H26 5X7 63 
5X7 H27 H27 H 0  1 N N N -9.327  -42.072 -31.416 -8.300  -2.468 -0.984 H27 5X7 64 
5X7 H28 H28 H 0  1 N N N -15.684 -33.212 -40.646 9.534   -0.886 -1.687 H28 5X7 65 
5X7 H29 H29 H 0  1 N N N -5.167  -39.310 -33.708 -4.767  1.165  1.017  H29 5X7 66 
5X7 H30 H30 H 0  1 N N N -6.009  -40.652 -34.556 -6.119  0.493  1.959  H30 5X7 67 
5X7 H31 H31 H 0  1 N N N -13.988 -35.429 -37.775 4.977   2.193  -0.873 H31 5X7 68 
5X7 H32 H32 H 0  1 N N N -15.814 -33.394 -38.106 8.859   3.035  -1.242 H32 5X7 69 
5X7 H34 H34 H 0  1 N N N -9.099  -40.387 -29.871 -6.965  -2.321 -2.959 H34 5X7 70 
5X7 H35 H35 H 0  1 N N N -8.182  -43.485 -31.212 -10.192 0.377  -0.899 H35 5X7 71 
5X7 H36 H36 H 0  1 N N N -5.074  -44.282 -31.606 -8.993  3.291  0.444  H36 5X7 72 
5X7 H37 H37 H 0  1 N N N -2.964  -42.149 -33.304 -5.740  3.413  1.510  H37 5X7 73 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5X7 C1  C2  SING N N 1  
5X7 O3  N2  DOUB N N 2  
5X7 O2  N2  SING N N 3  
5X7 N2  C8  SING N N 4  
5X7 C2  C26 SING N N 5  
5X7 C2  O1  SING N N 6  
5X7 C26 N1  SING N N 7  
5X7 C7  C8  DOUB Y N 8  
5X7 C7  C6  SING Y N 9  
5X7 C8  C9  SING Y N 10 
5X7 N1  C6  SING N N 11 
5X7 N1  C5  SING N N 12 
5X7 O1  C3  SING N N 13 
5X7 C6  C25 DOUB Y N 14 
5X7 C9  N3  SING N N 15 
5X7 C9  C24 DOUB Y N 16 
5X7 N3  C10 SING N N 17 
5X7 C10 C11 SING N N 18 
5X7 C25 C24 SING Y N 19 
5X7 C3  C5  SING N N 20 
5X7 C3  C4  SING N N 21 
5X7 C11 C12 DOUB Y N 22 
5X7 C11 C16 SING Y N 23 
5X7 C12 C13 SING Y N 24 
5X7 C16 C15 DOUB Y N 25 
5X7 C13 C14 DOUB Y N 26 
5X7 C15 C14 SING Y N 27 
5X7 C14 C17 SING N N 28 
5X7 O7  C22 SING N N 29 
5X7 C23 C22 SING N N 30 
5X7 C23 N4  SING N N 31 
5X7 C17 N4  SING N N 32 
5X7 C22 C21 SING N N 33 
5X7 N4  C18 SING N N 34 
5X7 C21 C20 SING N N 35 
5X7 C21 O6  SING N N 36 
5X7 C18 C20 SING N N 37 
5X7 C18 C19 SING N N 38 
5X7 C20 O5  SING N N 39 
5X7 C19 O4  SING N N 40 
5X7 N3  H1  SING N N 41 
5X7 C4  H2  SING N N 42 
5X7 C4  H3  SING N N 43 
5X7 C4  H4  SING N N 44 
5X7 C5  H5  SING N N 45 
5X7 C5  H6  SING N N 46 
5X7 C7  H7  SING N N 47 
5X7 C10 H8  SING N N 48 
5X7 C10 H9  SING N N 49 
5X7 C13 H10 SING N N 50 
5X7 C15 H11 SING N N 51 
5X7 C17 H12 SING N N 52 
5X7 C17 H13 SING N N 53 
5X7 C20 H14 SING N N 54 
5X7 C21 H15 SING N N 55 
5X7 C22 H16 SING N N 56 
5X7 C24 H17 SING N N 57 
5X7 C26 H18 SING N N 58 
5X7 C26 H19 SING N N 59 
5X7 C1  H20 SING N N 60 
5X7 C1  H21 SING N N 61 
5X7 C1  H22 SING N N 62 
5X7 C12 H23 SING N N 63 
5X7 C16 H24 SING N N 64 
5X7 C18 H25 SING N N 65 
5X7 C19 H26 SING N N 66 
5X7 C19 H27 SING N N 67 
5X7 C2  H28 SING N N 68 
5X7 C23 H29 SING N N 69 
5X7 C23 H30 SING N N 70 
5X7 C25 H31 SING N N 71 
5X7 C3  H32 SING N N 72 
5X7 O4  H34 SING N N 73 
5X7 O5  H35 SING N N 74 
5X7 O6  H36 SING N N 75 
5X7 O7  H37 SING N N 76 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5X7 SMILES           ACDLabs              12.01 "CC1CN(CC(C)O1)c1cc([N+]([O-])=O)c(NCc2ccc(CN3CC(O)C(O)C(O)C3CO)cc2)cc1"                                                                                                                                      
5X7 InChI            InChI                1.03  "InChI=1S/C26H36N4O7/c1-16-11-28(12-17(2)37-16)20-7-8-21(22(9-20)30(35)36)27-10-18-3-5-19(6-4-18)13-29-14-24(32)26(34)25(33)23(29)15-31/h3-9,16-17,23-27,31-34H,10-15H2,1-2H3/t16-,17+,23-,24+,25-,26-/m1/s1" 
5X7 InChIKey         InChI                1.03  JOGXSPCVKVNMOH-ROBXLRKYSA-N                                                                                                                                                                                   
5X7 SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1CN(C[C@H](C)O1)c2ccc(NCc3ccc(CN4C[C@H](O)[C@@H](O)[C@H](O)[C@H]4CO)cc3)c(c2)[N+]([O-])=O"                                                                                                            
5X7 SMILES           CACTVS               3.385 "C[CH]1CN(C[CH](C)O1)c2ccc(NCc3ccc(CN4C[CH](O)[CH](O)[CH](O)[CH]4CO)cc3)c(c2)[N+]([O-])=O"                                                                                                                    
5X7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1CN(C[C@@H](O1)C)c2ccc(c(c2)[N+](=O)[O-])NCc3ccc(cc3)CN4C[C@@H]([C@H]([C@@H]([C@H]4CO)O)O)O"                                                                                                          
5X7 SMILES           "OpenEye OEToolkits" 2.0.7 "CC1CN(CC(O1)C)c2ccc(c(c2)[N+](=O)[O-])NCc3ccc(cc3)CN4CC(C(C(C4CO)O)O)O"                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5X7 "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3R,4R,5S)-1-{[4-({4-[(2R,6S)-2,6-dimethylmorpholin-4-yl]-2-nitroanilino}methyl)phenyl]methyl}-2-(hydroxymethyl)piperidine-3,4,5-triol"                          
5X7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R},5~{S})-1-[[4-[[[4-[(2~{S},6~{R})-2,6-dimethylmorpholin-4-yl]-2-nitro-phenyl]amino]methyl]phenyl]methyl]-2-(hydroxymethyl)piperidine-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5X7 "Create component" 2021-07-24 RCSB 
5X7 "Initial release"  2023-02-22 RCSB 
# 
