data_YG6
# 
_chem_comp.id                                    YG6 
_chem_comp.name                                  "1-[(3aR,8aS)-2-(1H-benzotriazole-5-carbonyl)octahydropyrrolo[3,4-d]azepin-6(1H)-yl]-2-{[3,3-dimethyl-6-(propan-2-yl)-2,3-dihydro-1H-inden-5-yl]oxy}ethan-1-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C31 H39 N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-13 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        529.673 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YG6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G58 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YG6 C02 C1  C 0 1 N N N N N N -12.214 9.544  48.284 -0.642 3.970  0.123  C02 YG6 1  
YG6 C04 C2  C 0 1 N N N N N N -14.350 10.480 49.192 0.127  2.417  -1.719 C04 YG6 2  
YG6 C05 C3  C 0 1 N N N N N N -13.636 11.426 50.279 -1.009 1.451  -1.852 C05 YG6 3  
YG6 C06 C4  C 0 1 N N S N N N -12.055 11.988 49.339 -2.711 3.284  -1.177 C06 YG6 4  
YG6 C07 C5  C 0 1 N N R N N N -13.151 12.017 50.118 -2.376 2.043  -1.975 C07 YG6 5  
YG6 N09 N1  N 0 1 N N N N N N -11.346 12.997 51.016 -4.429 1.695  -0.754 N09 YG6 6  
YG6 C10 C6  C 0 1 N N N N N N -10.946 12.578 50.043 -4.250 3.151  -0.974 C10 YG6 7  
YG6 C13 C7  C 0 1 N N N N N N -14.193 8.354  47.868 1.265  2.522  0.416  C13 YG6 8  
YG6 O14 O1  O 0 1 N N N N N N -15.394 8.156  47.939 1.393  2.970  1.536  O14 YG6 9  
YG6 C15 C8  C 0 1 N N N N N N -13.370 7.286  47.088 2.221  1.473  -0.090 C15 YG6 10 
YG6 C17 C9  C 0 1 Y N N N N N -12.226 7.075  44.894 4.123  0.241  0.628  C17 YG6 11 
YG6 C18 C10 C 0 1 Y N N N N N -11.773 7.659  43.672 5.086  -0.099 1.567  C18 YG6 12 
YG6 C19 C11 C 0 1 Y N N N N N -11.258 6.778  42.695 6.038  -1.052 1.262  C19 YG6 13 
YG6 C20 C12 C 0 1 Y N N N N N -12.122 5.676  45.173 4.121  -0.379 -0.612 C20 YG6 14 
YG6 C21 C13 C 0 1 N N N N N N -11.871 9.185  43.414 5.094  0.572  2.916  C21 YG6 15 
YG6 C22 C14 C 0 1 N N N N N N -10.757 9.969  44.112 4.922  -0.483 4.011  C22 YG6 16 
YG6 C23 C15 C 0 1 N N N N N N -11.810 9.619  41.994 6.424  1.301  3.116  C23 YG6 17 
YG6 C24 C16 C 0 1 Y N N N N N -11.621 4.828  44.202 5.076  -1.333 -0.914 C24 YG6 18 
YG6 C25 C17 C 0 1 Y N N N N N -11.189 5.380  42.947 6.035  -1.670 0.023  C25 YG6 19 
YG6 C26 C18 C 0 1 N N N N N N -10.669 4.218  42.107 6.956  -2.729 -0.545 C26 YG6 20 
YG6 C27 C19 C 0 1 N N N N N N -11.178 2.978  42.767 6.728  -2.685 -2.071 C27 YG6 21 
YG6 C28 C20 C 0 1 N N N N N N -11.382 3.319  44.176 5.287  -2.143 -2.176 C28 YG6 22 
YG6 N01 N2  N 0 1 N N N N N N -13.549 9.552  48.503 0.268  2.963  -0.376 N01 YG6 23 
YG6 C03 C21 C 0 1 N N N N N N -11.318 10.578 48.819 -2.055 3.416  0.159  C03 YG6 24 
YG6 C08 C22 C 0 1 N N N N N N -12.774 12.733 51.081 -3.492 1.027  -1.682 C08 YG6 25 
YG6 O16 O2  O 0 1 N N N N N N -12.750 7.874  45.945 3.181  1.174  0.925  O16 YG6 26 
YG6 C29 C23 C 0 1 N N N N N N -10.133 2.921  44.908 4.288  -3.299 -2.239 C29 YG6 27 
YG6 C30 C24 C 0 1 N N N N N N -12.554 2.540  44.845 5.145  -1.249 -3.410 C30 YG6 28 
YG6 C31 C25 C 0 1 N N N N N N -10.567 13.747 52.025 -5.274 1.103  0.113  C31 YG6 29 
YG6 O32 O3  O 0 1 N N N N N N -10.911 14.899 52.305 -5.915 1.778  0.894  O32 YG6 30 
YG6 C33 C26 C 0 1 Y N N N N N -9.309  13.197 52.722 -5.420 -0.367 0.114  C33 YG6 31 
YG6 C34 C27 C 0 1 Y N N N N N -8.185  14.025 52.823 -5.983 -1.005 1.212  C34 YG6 32 
YG6 C35 C28 C 0 1 Y N N N N N -8.123  11.403 53.869 -5.127 -2.468 -1.009 C35 YG6 33 
YG6 C36 C29 C 0 1 Y N N N N N -9.281  11.852 53.259 -4.997 -1.112 -0.997 C36 YG6 34 
YG6 C37 C30 C 0 1 Y N N N N N -6.970  12.257 53.986 -5.683 -3.128 0.085  C37 YG6 35 
YG6 C38 C31 C 0 1 Y N N N N N -6.999  13.564 53.473 -6.119 -2.397 1.205  C38 YG6 36 
YG6 N39 N3  N 0 1 Y N N N N N -5.773  14.151 53.699 -6.615 -3.281 2.103  N39 YG6 37 
YG6 N40 N4  N 0 1 Y N N N N N -4.990  13.254 54.361 -6.525 -4.478 1.642  N40 YG6 38 
YG6 N41 N5  N 0 1 Y N N N N N -5.732  12.061 54.523 -5.943 -4.446 0.366  N41 YG6 39 
YG6 H42 H1  H 0 1 N N N N N N -11.846 8.586  48.680 -0.342 4.262  1.129  H42 YG6 40 
YG6 H43 H2  H 0 1 N N N N N N -12.084 9.563  47.192 -0.611 4.840  -0.532 H43 YG6 41 
YG6 H47 H3  H 0 1 N N N N N N -14.813 11.136 48.440 1.052  1.907  -1.988 H47 YG6 42 
YG6 H46 H4  H 0 1 N N N N N N -15.133 9.912  49.715 -0.031 3.240  -2.416 H46 YG6 43 
YG6 H48 H5  H 0 1 N N N N N N -14.457 11.873 50.859 -0.828 0.835  -2.733 H48 YG6 44 
YG6 H49 H6  H 0 1 N N N N N N -13.061 10.745 50.923 -1.001 0.798  -0.980 H49 YG6 45 
YG6 H11 H7  H 0 1 N N N N N N -12.236 12.579 48.429 -2.495 4.171  -1.773 H11 YG6 46 
YG6 H12 H8  H 0 1 N N N N N N -13.746 12.753 49.558 -2.503 2.311  -3.023 H12 YG6 47 
YG6 H52 H9  H 0 1 N N N N N N -10.182 11.814 50.249 -4.574 3.716  -0.100 H52 YG6 48 
YG6 H53 H10 H 0 1 N N N N N N -10.504 13.385 49.440 -4.786 3.476  -1.865 H53 YG6 49 
YG6 H54 H11 H 0 1 N N N N N N -12.594 6.872  47.749 1.668  0.570  -0.345 H54 YG6 50 
YG6 H55 H12 H 0 1 N N N N N N -14.042 6.478  46.761 2.734  1.847  -0.976 H55 YG6 51 
YG6 H56 H13 H 0 1 N N N N N N -10.914 7.169  41.749 6.787  -1.316 1.993  H56 YG6 52 
YG6 H57 H14 H 0 1 N N N N N N -12.431 5.286  46.131 3.372  -0.116 -1.344 H57 YG6 53 
YG6 H58 H15 H 0 1 N N N N N N -12.829 9.526  43.834 4.275  1.289  2.971  H58 YG6 54 
YG6 H59 H16 H 0 1 N N N N N N -10.873 11.042 43.897 5.741  -1.200 3.957  H59 YG6 55 
YG6 H61 H17 H 0 1 N N N N N N -10.818 9.804  45.198 4.928  0.002  4.987  H61 YG6 56 
YG6 H60 H18 H 0 1 N N N N N N -9.780  9.625  43.743 3.975  -1.003 3.869  H60 YG6 57 
YG6 H62 H19 H 0 1 N N N N N N -11.889 10.715 41.941 6.547  2.053  2.336  H62 YG6 58 
YG6 H64 H20 H 0 1 N N N N N N -10.854 9.299  41.554 6.430  1.786  4.092  H64 YG6 59 
YG6 H63 H21 H 0 1 N N N N N N -12.642 9.164  41.436 7.244  0.584  3.061  H63 YG6 60 
YG6 H66 H22 H 0 1 N N N N N N -11.051 4.288  41.078 7.994  -2.493 -0.310 H66 YG6 61 
YG6 H65 H23 H 0 1 N N N N N N -9.569  4.219  42.091 6.692  -3.711 -0.151 H65 YG6 62 
YG6 H67 H24 H 0 1 N N N N N N -12.128 2.665  42.309 7.434  -2.006 -2.549 H67 YG6 63 
YG6 H68 H25 H 0 1 N N N N N N -10.441 2.167  42.674 6.799  -3.684 -2.502 H68 YG6 64 
YG6 H44 H26 H 0 1 N N N N N N -10.777 10.146 49.674 -2.027 2.432  0.628  H44 YG6 65 
YG6 H45 H27 H 0 1 N N N N N N -10.601 10.844 48.028 -2.666 4.072  0.780  H45 YG6 66 
YG6 H51 H28 H 0 1 N N N N N N -13.317 13.689 51.050 -4.006 0.759  -2.605 H51 YG6 67 
YG6 H50 H29 H 0 1 N N N N N N -13.000 12.213 52.024 -3.073 0.136  -1.214 H50 YG6 68 
YG6 H69 H30 H 0 1 N N N N N N -10.010 1.829  44.858 3.273  -2.903 -2.237 H69 YG6 69 
YG6 H70 H31 H 0 1 N N N N N N -9.264  3.409  44.443 4.452  -3.872 -3.151 H70 YG6 70 
YG6 H71 H32 H 0 1 N N N N N N -10.209 3.233  45.960 4.427  -3.947 -1.373 H71 YG6 71 
YG6 H72 H33 H 0 1 N N N N N N -12.346 1.460  44.807 5.888  -0.453 -3.369 H72 YG6 72 
YG6 H74 H34 H 0 1 N N N N N N -12.654 2.857  45.893 5.300  -1.845 -4.310 H74 YG6 73 
YG6 H73 H35 H 0 1 N N N N N N -13.490 2.752  44.307 4.146  -0.814 -3.430 H73 YG6 74 
YG6 H75 H36 H 0 1 N N N N N N -8.214  15.021 52.406 -6.312 -0.431 2.065  H75 YG6 75 
YG6 H76 H37 H 0 1 N N N N N N -8.084  10.398 54.263 -4.798 -3.033 -1.869 H76 YG6 76 
YG6 H77 H38 H 0 1 N N N N N N -10.148 11.212 53.185 -4.564 -0.607 -1.848 H77 YG6 77 
YG6 H78 H39 H 0 1 N N N N N N -5.406  11.221 54.956 -5.763 -5.207 -0.208 H78 YG6 78 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YG6 N01 C02 SING N N 1  
YG6 C02 C03 SING N N 2  
YG6 N01 C04 SING N N 3  
YG6 C04 C05 SING N N 4  
YG6 C03 C06 SING N N 5  
YG6 C05 C07 SING N N 6  
YG6 C06 C07 SING N N 7  
YG6 C07 C08 SING N N 8  
YG6 C08 N09 SING N N 9  
YG6 C06 C10 SING N N 10 
YG6 N09 C10 SING N N 11 
YG6 N01 C13 SING N N 12 
YG6 C13 O14 DOUB N N 13 
YG6 C13 C15 SING N N 14 
YG6 C15 O16 SING N N 15 
YG6 O16 C17 SING N N 16 
YG6 C17 C18 DOUB Y N 17 
YG6 C18 C19 SING Y N 18 
YG6 C17 C20 SING Y N 19 
YG6 C18 C21 SING N N 20 
YG6 C21 C22 SING N N 21 
YG6 C21 C23 SING N N 22 
YG6 C20 C24 DOUB Y N 23 
YG6 C19 C25 DOUB Y N 24 
YG6 C24 C25 SING Y N 25 
YG6 C25 C26 SING N N 26 
YG6 C26 C27 SING N N 27 
YG6 C24 C28 SING N N 28 
YG6 C27 C28 SING N N 29 
YG6 C28 C29 SING N N 30 
YG6 C28 C30 SING N N 31 
YG6 N09 C31 SING N N 32 
YG6 C31 O32 DOUB N N 33 
YG6 C31 C33 SING N N 34 
YG6 C33 C34 DOUB Y N 35 
YG6 C33 C36 SING Y N 36 
YG6 C35 C36 DOUB Y N 37 
YG6 C35 C37 SING Y N 38 
YG6 C34 C38 SING Y N 39 
YG6 C37 C38 DOUB Y N 40 
YG6 C38 N39 SING Y N 41 
YG6 N39 N40 DOUB Y N 42 
YG6 C37 N41 SING Y N 43 
YG6 N40 N41 SING Y N 44 
YG6 C02 H42 SING N N 45 
YG6 C02 H43 SING N N 46 
YG6 C04 H47 SING N N 47 
YG6 C04 H46 SING N N 48 
YG6 C05 H48 SING N N 49 
YG6 C05 H49 SING N N 50 
YG6 C06 H11 SING N N 51 
YG6 C07 H12 SING N N 52 
YG6 C10 H52 SING N N 53 
YG6 C10 H53 SING N N 54 
YG6 C15 H54 SING N N 55 
YG6 C15 H55 SING N N 56 
YG6 C19 H56 SING N N 57 
YG6 C20 H57 SING N N 58 
YG6 C21 H58 SING N N 59 
YG6 C22 H59 SING N N 60 
YG6 C22 H61 SING N N 61 
YG6 C22 H60 SING N N 62 
YG6 C23 H62 SING N N 63 
YG6 C23 H64 SING N N 64 
YG6 C23 H63 SING N N 65 
YG6 C26 H66 SING N N 66 
YG6 C26 H65 SING N N 67 
YG6 C27 H67 SING N N 68 
YG6 C27 H68 SING N N 69 
YG6 C03 H44 SING N N 70 
YG6 C03 H45 SING N N 71 
YG6 C08 H51 SING N N 72 
YG6 C08 H50 SING N N 73 
YG6 C29 H69 SING N N 74 
YG6 C29 H70 SING N N 75 
YG6 C29 H71 SING N N 76 
YG6 C30 H72 SING N N 77 
YG6 C30 H74 SING N N 78 
YG6 C30 H73 SING N N 79 
YG6 C34 H75 SING N N 80 
YG6 C35 H76 SING N N 81 
YG6 C36 H77 SING N N 82 
YG6 N41 H78 SING N N 83 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YG6 SMILES           ACDLabs              12.01 "CC(C)c1cc2CCC(C)(C)c2cc1OCC(=O)N1CCC2CN(CC2CC1)C(=O)c1cc2nn[NH]c2cc1"                                                                                                                                    
YG6 InChI            InChI                1.06  "InChI=1S/C31H39N5O3/c1-19(2)24-13-20-7-10-31(3,4)25(20)15-28(24)39-18-29(37)35-11-8-22-16-36(17-23(22)9-12-35)30(38)21-5-6-26-27(14-21)33-34-32-26/h5-6,13-15,19,22-23H,7-12,16-18H2,1-4H3,(H,32,33,34)" 
YG6 InChIKey         InChI                1.06  WMVVKEXZZKHQCI-UHFFFAOYSA-N                                                                                                                                                                               
YG6 SMILES_CANONICAL CACTVS               3.385 "CC(C)c1cc2CCC(C)(C)c2cc1OCC(=O)N3CC[C@H]4CN(C[C@H]4CC3)C(=O)c5ccc6[nH]nnc6c5"                                                                                                                            
YG6 SMILES           CACTVS               3.385 "CC(C)c1cc2CCC(C)(C)c2cc1OCC(=O)N3CC[CH]4CN(C[CH]4CC3)C(=O)c5ccc6[nH]nnc6c5"                                                                                                                              
YG6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)c1cc2c(cc1OCC(=O)N3CC[C@@H]4CN(C[C@@H]4CC3)C(=O)c5ccc6c(c5)nn[nH]6)C(CC2)(C)C"                                                                                                                      
YG6 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)c1cc2c(cc1OCC(=O)N3CCC4CN(CC4CC3)C(=O)c5ccc6c(c5)nn[nH]6)C(CC2)(C)C"                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YG6 "SYSTEMATIC NAME" ACDLabs              12.01 "1-[(3aR,8aS)-2-(1H-benzotriazole-5-carbonyl)octahydropyrrolo[3,4-d]azepin-6(1H)-yl]-2-{[3,3-dimethyl-6-(propan-2-yl)-2,3-dihydro-1H-inden-5-yl]oxy}ethan-1-one"                             
YG6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[(3~{a}~{S},8~{a}~{R})-2-(1~{H}-benzotriazol-5-ylcarbonyl)-1,3,3~{a},4,5,7,8,8~{a}-octahydropyrrolo[3,4-d]azepin-6-yl]-2-[(3,3-dimethyl-6-propan-2-yl-1,2-dihydroinden-5-yl)oxy]ethanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YG6 "Create component" 2023-06-13 RCSB 
YG6 "Initial release"  2024-12-18 RCSB 
# 
