data_Y26
# 
_chem_comp.id                                    Y26 
_chem_comp.name                                  "propyl (2R,3S)-2-(carbamimidamidomethyl)-3-[2-(4-chloro-3-fluoroanilino)(oxo)acetamido]-6-[(methylamino)methyl]-2,3-dihydro-1H-indole-1-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H29 Cl F N7 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-27 
_chem_comp.pdbx_modified_date                    2023-03-31 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        533.983 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y26 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FM3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y26 N12  N1  N  0 1 N N N -23.773 -2.412 -79.733 2.518  -5.502 -1.209 N12  Y26 1  
Y26 C17  C1  C  0 1 N N N -24.974 2.142  -75.813 -2.699 -0.114 -0.359 C17  Y26 2  
Y26 C20  C2  C  0 1 Y N N -24.107 5.028  -75.367 -5.165 0.998  0.568  C20  Y26 3  
Y26 C21  C3  C  0 1 Y N N -23.898 6.374  -75.371 -6.410 1.212  1.132  C21  Y26 4  
Y26 C26  C4  C  0 1 Y N N -22.964 4.883  -77.438 -6.177 -0.372 -1.130 C26  Y26 5  
Y26 C02  C5  C  0 1 N N N -29.925 -1.666 -76.628 4.134  -0.860 1.212  C02  Y26 6  
Y26 C04  C6  C  0 1 N N N -31.386 -1.347 -78.441 6.197  -0.212 2.222  C04  Y26 7  
Y26 C05  C7  C  0 1 N N N -31.363 -1.866 -79.923 7.181  0.961  2.216  C05  Y26 8  
Y26 C06  C8  C  0 1 N N N -31.193 -3.379 -79.990 8.343  0.656  3.163  C06  Y26 9  
Y26 C08  C9  C  0 1 N N R -27.420 -1.571 -76.732 1.928  -1.548 0.269  C08  Y26 10 
Y26 C09  C10 C  0 1 N N N -27.113 -2.678 -77.724 2.376  -2.927 -0.220 C09  Y26 11 
Y26 C11  C11 C  0 1 N N N -24.820 -2.913 -78.797 1.363  -5.104 -0.754 C11  Y26 12 
Y26 C14  C12 C  0 1 N N S -26.384 -1.423 -75.644 1.015  -0.883 -0.773 C14  Y26 13 
Y26 C16  C13 C  0 1 N N N -25.148 0.615  -76.046 -1.375 -0.448 -0.964 C16  Y26 14 
Y26 C19  C14 C  0 1 Y N N -23.601 4.268  -76.393 -5.046 0.207  -0.567 C19  Y26 15 
Y26 C23  C15 C  0 1 Y N N -23.217 7.009  -76.399 -7.536 0.633  0.567  C23  Y26 16 
Y26 C25  C16 C  0 1 Y N N -22.755 6.259  -77.435 -7.417 -0.160 -0.560 C25  Y26 17 
Y26 C29  C17 C  0 1 Y N N -28.409 -2.232 -74.633 2.931  0.446  -0.456 C29  Y26 18 
Y26 C30  C18 C  0 1 Y N N -27.050 -1.980 -74.327 1.746  0.379  -1.171 C30  Y26 19 
Y26 C31  C19 C  0 1 Y N N -26.550 -2.206 -73.035 1.412  1.375  -2.068 C31  Y26 20 
Y26 C32  C20 C  0 1 Y N N -27.410 -2.722 -72.026 2.261  2.449  -2.261 C32  Y26 21 
Y26 C33  C21 C  0 1 Y N N -28.768 -2.997 -72.333 3.446  2.525  -1.553 C33  Y26 22 
Y26 C34  C22 C  0 1 N N N -29.676 -3.559 -71.252 4.373  3.695  -1.762 C34  Y26 23 
Y26 C36  C23 C  0 1 N N N -31.630 -2.154 -71.090 4.911  5.928  -0.996 C36  Y26 24 
Y26 C37  C24 C  0 1 Y N N -29.267 -2.747 -73.626 3.783  1.534  -0.656 C37  Y26 25 
Y26 F22  F1  F  0 1 N N N -24.374 7.087  -74.323 -6.529 1.986  2.233  F22  Y26 26 
Y26 N07  N2  N  0 1 N N N -28.583 -1.884 -76.013 3.082  -0.654 0.395  N07  Y26 27 
Y26 N10  N3  N  0 1 N N N -26.079 -2.195 -78.675 1.226  -3.833 -0.248 N10  Y26 28 
Y26 N13  N4  N  0 1 N N N -24.591 -3.977 -78.103 0.283  -5.954 -0.780 N13  Y26 29 
Y26 N15  N5  N  0 1 N N N -26.265 -0.086 -75.410 -0.284 -0.556 -0.180 N15  Y26 30 
Y26 N18  N6  N  0 1 N N N -23.826 2.798  -76.485 -3.790 -0.007 -1.142 N18  Y26 31 
Y26 N35  N7  N  0 1 N N N -30.259 -2.451 -70.534 4.026  4.768  -0.820 N35  Y26 32 
Y26 O01  O1  O  0 1 N N N -30.884 -1.718 -75.979 4.216  -1.891 1.849  O01  Y26 33 
Y26 O03  O2  O  0 1 N N N -30.028 -1.401 -77.990 5.094  0.078  1.323  O03  Y26 34 
Y26 O27  O3  O  0 1 N N N -25.741 2.715  -75.110 -2.793 0.060  0.839  O27  Y26 35 
Y26 O28  O4  O  0 1 N N N -24.391 0.010  -76.737 -1.282 -0.622 -2.161 O28  Y26 36 
Y26 CL24 CL1 CL 0 0 N N N -22.963 8.751  -76.382 -9.097 0.903  1.276  CL24 Y26 37 
Y26 H1   H1  H  0 1 N N N -22.955 -2.988 -79.723 2.615  -6.399 -1.566 H1   Y26 38 
Y26 H2   H2  H  0 1 N N N -24.664 4.564  -74.567 -4.288 1.449  1.008  H2   Y26 39 
Y26 H3   H3  H  0 1 N N N -22.620 4.293  -78.275 -6.086 -0.991 -2.010 H3   Y26 40 
Y26 H4   H4  H  0 1 N N N -31.762 -0.314 -78.402 6.708  -1.116 1.891  H4   Y26 41 
Y26 H5   H5  H  0 1 N N N -32.023 -1.993 -77.818 5.814  -0.359 3.231  H5   Y26 42 
Y26 H6   H6  H  0 1 N N N -30.526 -1.390 -80.454 7.564  1.109  1.206  H6   Y26 43 
Y26 H7   H7  H  0 1 N N N -32.310 -1.592 -80.411 6.670  1.865  2.547  H7   Y26 44 
Y26 H8   H8  H  0 1 N N N -31.182 -3.701 -81.042 7.960  0.508  4.172  H8   Y26 45 
Y26 H9   H9  H  0 1 N N N -30.245 -3.663 -79.510 8.854  -0.249 2.832  H9   Y26 46 
Y26 H10  H10 H  0 1 N N N -32.029 -3.865 -79.467 9.044  1.491  3.159  H10  Y26 47 
Y26 H11  H11 H  0 1 N N N -27.530 -0.617 -77.269 1.411  -1.635 1.225  H11  Y26 48 
Y26 H12  H12 H  0 1 N N N -28.027 -2.944 -78.275 2.794  -2.838 -1.223 H12  Y26 49 
Y26 H13  H13 H  0 1 N N N -26.738 -3.562 -77.187 3.135  -3.323 0.455  H13  Y26 50 
Y26 H14  H14 H  0 1 N N N -25.445 -1.946 -75.877 0.884  -1.536 -1.636 H14  Y26 51 
Y26 H15  H15 H  0 1 N N N -22.228 6.729  -78.252 -8.296 -0.610 -0.998 H15  Y26 52 
Y26 H16  H16 H  0 1 N N N -25.517 -1.989 -72.808 0.486  1.315  -2.621 H16  Y26 53 
Y26 H17  H17 H  0 1 N N N -27.031 -2.904 -71.031 1.999  3.227  -2.963 H17  Y26 54 
Y26 H18  H18 H  0 1 N N N -30.471 -4.165 -71.711 5.402  3.379  -1.590 H18  Y26 55 
Y26 H19  H19 H  0 1 N N N -29.091 -4.184 -70.561 4.271  4.061  -2.783 H19  Y26 56 
Y26 H20  H20 H  0 1 N N N -32.073 -1.309 -70.542 4.812  6.310  -2.012 H20  Y26 57 
Y26 H21  H21 H  0 1 N N N -31.545 -1.895 -72.156 4.632  6.708  -0.287 H21  Y26 58 
Y26 H22  H22 H  0 1 N N N -32.271 -3.041 -70.978 5.943  5.628  -0.818 H22  Y26 59 
Y26 H23  H23 H  0 1 N N N -30.304 -2.947 -73.852 4.710  1.599  -0.105 H23  Y26 60 
Y26 H24  H24 H  0 1 N N N -26.248 -1.380 -79.229 0.366  -3.536 0.090  H24  Y26 61 
Y26 H25  H25 H  0 1 N N N -25.285 -4.320 -77.469 0.381  -6.851 -1.137 H25  Y26 62 
Y26 H26  H26 H  0 1 N N N -23.720 -4.459 -78.199 -0.576 -5.657 -0.442 H26  Y26 63 
Y26 H27  H27 H  0 1 N N N -26.916 0.398  -74.826 -0.359 -0.417 0.777  H27  Y26 64 
Y26 H28  H28 H  0 1 N N N -23.187 2.239  -77.013 -3.704 -0.077 -2.106 H28  Y26 65 
Y26 H29  H29 H  0 1 N N N -30.336 -2.686 -69.565 3.058  5.034  -0.916 H29  Y26 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y26 C06 C05  SING N N 1  
Y26 C05 C04  SING N N 2  
Y26 N12 C11  DOUB N N 3  
Y26 C11 N10  SING N N 4  
Y26 C11 N13  SING N N 5  
Y26 N10 C09  SING N N 6  
Y26 C04 O03  SING N N 7  
Y26 O03 C02  SING N N 8  
Y26 C09 C08  SING N N 9  
Y26 C26 C25  DOUB Y N 10 
Y26 C26 C19  SING Y N 11 
Y26 C25 C23  SING Y N 12 
Y26 O28 C16  DOUB N N 13 
Y26 C08 N07  SING N N 14 
Y26 C08 C14  SING N N 15 
Y26 C02 N07  SING N N 16 
Y26 C02 O01  DOUB N N 17 
Y26 N18 C19  SING N N 18 
Y26 N18 C17  SING N N 19 
Y26 C23 CL24 SING N N 20 
Y26 C23 C21  DOUB Y N 21 
Y26 C19 C20  DOUB Y N 22 
Y26 C16 C17  SING N N 23 
Y26 C16 N15  SING N N 24 
Y26 N07 C29  SING N N 25 
Y26 C17 O27  DOUB N N 26 
Y26 C14 N15  SING N N 27 
Y26 C14 C30  SING N N 28 
Y26 C21 C20  SING Y N 29 
Y26 C21 F22  SING N N 30 
Y26 C29 C30  DOUB Y N 31 
Y26 C29 C37  SING Y N 32 
Y26 C30 C31  SING Y N 33 
Y26 C37 C33  DOUB Y N 34 
Y26 C31 C32  DOUB Y N 35 
Y26 C33 C32  SING Y N 36 
Y26 C33 C34  SING N N 37 
Y26 C34 N35  SING N N 38 
Y26 C36 N35  SING N N 39 
Y26 N12 H1   SING N N 40 
Y26 C20 H2   SING N N 41 
Y26 C26 H3   SING N N 42 
Y26 C04 H4   SING N N 43 
Y26 C04 H5   SING N N 44 
Y26 C05 H6   SING N N 45 
Y26 C05 H7   SING N N 46 
Y26 C06 H8   SING N N 47 
Y26 C06 H9   SING N N 48 
Y26 C06 H10  SING N N 49 
Y26 C08 H11  SING N N 50 
Y26 C09 H12  SING N N 51 
Y26 C09 H13  SING N N 52 
Y26 C14 H14  SING N N 53 
Y26 C25 H15  SING N N 54 
Y26 C31 H16  SING N N 55 
Y26 C32 H17  SING N N 56 
Y26 C34 H18  SING N N 57 
Y26 C34 H19  SING N N 58 
Y26 C36 H20  SING N N 59 
Y26 C36 H21  SING N N 60 
Y26 C36 H22  SING N N 61 
Y26 C37 H23  SING N N 62 
Y26 N10 H24  SING N N 63 
Y26 N13 H25  SING N N 64 
Y26 N13 H26  SING N N 65 
Y26 N15 H27  SING N N 66 
Y26 N18 H28  SING N N 67 
Y26 N35 H29  SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y26 SMILES           ACDLabs              12.01 "Clc1ccc(cc1F)NC(=O)C(=O)NC1c2ccc(cc2N(C1CNC(=N)N)C(=O)OCCC)CNC"                                                                                                                                                              
Y26 InChI            InChI                1.06  "InChI=1S/C24H29ClFN7O4/c1-3-8-37-24(36)33-18-9-13(11-29-2)4-6-15(18)20(19(33)12-30-23(27)28)32-22(35)21(34)31-14-5-7-16(25)17(26)10-14/h4-7,9-10,19-20,29H,3,8,11-12H2,1-2H3,(H,31,34)(H,32,35)(H4,27,28,30)/t19-,20+/m1/s1" 
Y26 InChIKey         InChI                1.06  YVEFINLMFLWNTD-UXHICEINSA-N                                                                                                                                                                                                   
Y26 SMILES_CANONICAL CACTVS               3.385 "CCCOC(=O)N1[C@H](CNC(N)=N)[C@@H](NC(=O)C(=O)Nc2ccc(Cl)c(F)c2)c3ccc(CNC)cc13"                                                                                                                                                 
Y26 SMILES           CACTVS               3.385 "CCCOC(=O)N1[CH](CNC(N)=N)[CH](NC(=O)C(=O)Nc2ccc(Cl)c(F)c2)c3ccc(CNC)cc13"                                                                                                                                                    
Y26 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\NC[C@@H]1[C@H](c2ccc(cc2N1C(=O)OCCC)CNC)NC(=O)C(=O)Nc3ccc(c(c3)F)Cl"                                                                                                                                             
Y26 SMILES           "OpenEye OEToolkits" 2.0.7 "CCCOC(=O)N1c2cc(ccc2C(C1CNC(=N)N)NC(=O)C(=O)Nc3ccc(c(c3)F)Cl)CNC"                                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y26 "SYSTEMATIC NAME" ACDLabs              12.01 "propyl (2R,3S)-2-(carbamimidamidomethyl)-3-[2-(4-chloro-3-fluoroanilino)(oxo)acetamido]-6-[(methylamino)methyl]-2,3-dihydro-1H-indole-1-carboxylate"                                
Y26 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "propyl (2~{R},3~{S})-2-(carbamimidamidomethyl)-3-[[2-[(4-chloranyl-3-fluoranyl-phenyl)amino]-2-oxidanylidene-ethanoyl]amino]-6-(methylaminomethyl)-2,3-dihydroindole-1-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y26 "Create component" 2022-12-27 RCSB 
Y26 "Initial release"  2023-04-05 RCSB 
# 
