data_XJ6
# 
_chem_comp.id                                    XJ6 
_chem_comp.name                                  "(2-{[(2S)-5-chloro-2,3-dihydro-1H-inden-2-yl]amino}pyrimidin-5-yl)(6-oxa-1-azaspiro[3.3]heptan-1-yl)methanone" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H19 Cl N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-07 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        370.833 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XJ6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G3H 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XJ6 C10 C1  C  0 1 N N N N N N -12.820 6.203  44.240 -2.642 0.012  -1.007 C10 XJ6 1  
XJ6 C15 C2  C  0 1 Y N N N N N -14.220 9.559  48.291 2.773  1.035  -0.114 C15 XJ6 2  
XJ6 C16 C3  C  0 1 Y N N N N N -13.112 8.914  47.764 1.853  0.017  0.173  C16 XJ6 3  
XJ6 C18 C4  C  0 1 N N N N N N -14.161 10.930 48.880 4.222  0.759  -0.145 C18 XJ6 4  
XJ6 C21 C5  C  0 1 N N N N N N -11.593 10.972 49.462 4.026  -1.835 0.043  C21 XJ6 5  
XJ6 C22 C6  C  0 1 N N N N N N -11.314 12.166 50.394 5.365  -2.403 -0.469 C22 XJ6 6  
XJ6 C23 C7  C  0 1 N N N N N N -12.778 12.573 50.271 5.991  -1.124 0.085  C23 XJ6 7  
XJ6 C24 C8  C  0 1 N N N N N N -13.261 13.907 49.676 7.228  -0.496 -0.559 C24 XJ6 8  
XJ6 C26 C9  C  0 1 N N N N N N -13.636 12.975 51.481 6.771  -1.120 1.400  C26 XJ6 9  
XJ6 CL1 CL1 CL 0 0 N N N N N N -10.423 1.217  41.953 -8.346 -0.884 0.625  CL1 XJ6 10 
XJ6 C2  C10 C  0 1 Y N N N N N -11.072 2.709  42.582 -6.705 -0.679 0.096  C2  XJ6 11 
XJ6 C3  C11 C  0 1 Y N N N N N -10.627 3.899  42.065 -6.226 -1.413 -0.974 C3  XJ6 12 
XJ6 C4  C12 C  0 1 Y N N N N N -11.161 5.080  42.546 -4.920 -1.248 -1.393 C4  XJ6 13 
XJ6 C5  C13 C  0 1 Y N N N N N -12.121 5.063  43.548 -4.089 -0.349 -0.746 C5  XJ6 14 
XJ6 C6  C14 C  0 1 Y N N N N N -12.544 3.857  44.073 -4.567 0.385  0.323  C6  XJ6 15 
XJ6 C7  C15 C  0 1 Y N N N N N -12.029 2.663  43.577 -5.876 0.219  0.743  C7  XJ6 16 
XJ6 C8  C16 C  0 1 N N N N N N -13.579 4.099  45.139 -3.475 1.289  0.853  C8  XJ6 17 
XJ6 C9  C17 C  0 1 N N R N N N -13.319 5.558  45.536 -2.160 0.716  0.279  C9  XJ6 18 
XJ6 N11 N1  N  0 1 N N N N N N -14.508 6.209  46.082 -1.217 1.792  -0.035 N11 XJ6 19 
XJ6 C12 C18 C  0 1 Y N N N N N -14.421 7.328  46.814 0.138  1.536  -0.059 C12 XJ6 20 
XJ6 N13 N2  N  0 1 Y N N N N N -15.569 7.856  47.269 0.976  2.524  -0.345 N13 XJ6 21 
XJ6 C14 C19 C  0 1 Y N N N N N -15.441 8.973  47.992 2.279  2.320  -0.377 C14 XJ6 22 
XJ6 N17 N3  N  0 1 Y N N N N N -13.185 7.799  47.031 0.566  0.305  0.191  N17 XJ6 23 
XJ6 O19 O1  O  0 1 N N N N N N -15.112 11.682 48.749 5.012  1.674  -0.278 O19 XJ6 24 
XJ6 N20 N4  N  0 1 N N N N N N -13.037 11.293 49.551 4.670  -0.506 -0.027 N20 XJ6 25 
XJ6 O25 O2  O  0 1 N N N N N N -14.314 13.974 50.674 7.945  -1.061 0.561  O25 XJ6 26 
XJ6 H33 H1  H  0 1 N N N N N N -12.122 7.027  44.451 -2.054 -0.888 -1.188 H33 XJ6 27 
XJ6 H34 H2  H  0 1 N N N N N N -13.659 6.579  43.636 -2.569 0.688  -1.859 H34 XJ6 28 
XJ6 H37 H3  H  0 1 N N N N N N -12.136 9.336  47.956 2.194  -0.987 0.377  H37 XJ6 29 
XJ6 H38 H4  H  0 1 N N N N N N -11.318 9.993  49.881 3.200  -1.960 -0.657 H38 XJ6 30 
XJ6 H39 H5  H  0 1 N N N N N N -11.166 11.072 48.453 3.775  -2.150 1.056  H39 XJ6 31 
XJ6 H40 H6  H  0 1 N N N N N N -11.007 11.884 51.412 5.684  -3.309 0.047  H40 XJ6 32 
XJ6 H41 H7  H  0 1 N N N N N N -10.604 12.901 49.987 5.421  -2.487 -1.554 H41 XJ6 33 
XJ6 H42 H8  H  0 1 N N N N N N -12.525 14.722 49.745 7.496  -0.933 -1.521 H42 XJ6 34 
XJ6 H43 H9  H  0 1 N N N N N N -13.627 13.830 48.642 7.215  0.594  -0.571 H43 XJ6 35 
XJ6 H45 H10 H  0 1 N N N N N N -14.294 12.174 51.850 6.614  -0.226 2.004  H45 XJ6 36 
XJ6 H44 H11 H  0 1 N N N N N N -13.060 13.392 52.320 6.679  -2.043 1.972  H44 XJ6 37 
XJ6 H27 H12 H  0 1 N N N N N N -9.871  3.913  41.294 -6.871 -2.115 -1.481 H27 XJ6 38 
XJ6 H28 H13 H  0 1 N N N N N N -10.828 6.023  42.139 -4.546 -1.822 -2.228 H28 XJ6 39 
XJ6 H29 H14 H  0 1 N N N N N N -12.372 1.715  43.964 -6.251 0.792  1.578  H29 XJ6 40 
XJ6 H31 H15 H  0 1 N N N N N N -14.596 3.972  44.740 -3.626 2.310  0.503  H31 XJ6 41 
XJ6 H30 H16 H  0 1 N N N N N N -13.433 3.423  45.994 -3.456 1.261  1.943  H30 XJ6 42 
XJ6 H32 H17 H  0 1 N N N N N N -12.508 5.583  46.279 -1.716 -0.001 0.969  H32 XJ6 43 
XJ6 H35 H18 H  0 1 N N N N N N -15.093 6.428  45.301 -1.545 2.684  -0.226 H35 XJ6 44 
XJ6 H36 H19 H  0 1 N N N N N N -16.338 9.445  48.364 2.956  3.131  -0.603 H36 XJ6 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XJ6 CL1 C2  SING N N 1  
XJ6 C2  C3  DOUB Y N 2  
XJ6 C2  C7  SING Y N 3  
XJ6 C3  C4  SING Y N 4  
XJ6 C4  C5  DOUB Y N 5  
XJ6 C5  C6  SING Y N 6  
XJ6 C5  C10 SING N N 7  
XJ6 C6  C7  DOUB Y N 8  
XJ6 C6  C8  SING N N 9  
XJ6 C8  C9  SING N N 10 
XJ6 C9  C10 SING N N 11 
XJ6 C9  N11 SING N N 12 
XJ6 N11 C12 SING N N 13 
XJ6 C12 N13 DOUB Y N 14 
XJ6 C12 N17 SING Y N 15 
XJ6 N13 C14 SING Y N 16 
XJ6 C14 C15 DOUB Y N 17 
XJ6 C15 C16 SING Y N 18 
XJ6 C15 C18 SING N N 19 
XJ6 C16 N17 DOUB Y N 20 
XJ6 C18 O19 DOUB N N 21 
XJ6 C18 N20 SING N N 22 
XJ6 N20 C21 SING N N 23 
XJ6 N20 C23 SING N N 24 
XJ6 C21 C22 SING N N 25 
XJ6 C22 C23 SING N N 26 
XJ6 C23 C24 SING N N 27 
XJ6 C23 C26 SING N N 28 
XJ6 C24 O25 SING N N 29 
XJ6 O25 C26 SING N N 30 
XJ6 C10 H33 SING N N 31 
XJ6 C10 H34 SING N N 32 
XJ6 C16 H37 SING N N 33 
XJ6 C21 H38 SING N N 34 
XJ6 C21 H39 SING N N 35 
XJ6 C22 H40 SING N N 36 
XJ6 C22 H41 SING N N 37 
XJ6 C24 H42 SING N N 38 
XJ6 C24 H43 SING N N 39 
XJ6 C26 H45 SING N N 40 
XJ6 C26 H44 SING N N 41 
XJ6 C3  H27 SING N N 42 
XJ6 C4  H28 SING N N 43 
XJ6 C7  H29 SING N N 44 
XJ6 C8  H31 SING N N 45 
XJ6 C8  H30 SING N N 46 
XJ6 C9  H32 SING N N 47 
XJ6 N11 H35 SING N N 48 
XJ6 C14 H36 SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XJ6 SMILES           ACDLabs              12.01 "O=C(N1CCC21COC2)c1cnc(NC2Cc3ccc(Cl)cc3C2)nc1"                                                                                                                      
XJ6 InChI            InChI                1.06  "InChI=1S/C19H19ClN4O2/c20-15-2-1-12-6-16(7-13(12)5-15)23-18-21-8-14(9-22-18)17(25)24-4-3-19(24)10-26-11-19/h1-2,5,8-9,16H,3-4,6-7,10-11H2,(H,21,22,23)/t16-/m0/s1" 
XJ6 InChIKey         InChI                1.06  HAPPEVDZYHPJET-INIZCTEOSA-N                                                                                                                                         
XJ6 SMILES_CANONICAL CACTVS               3.385 "Clc1ccc2C[C@H](Cc2c1)Nc3ncc(cn3)C(=O)N4CCC45COC5"                                                                                                                  
XJ6 SMILES           CACTVS               3.385 "Clc1ccc2C[CH](Cc2c1)Nc3ncc(cn3)C(=O)N4CCC45COC5"                                                                                                                   
XJ6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1Cl)C[C@@H](C2)Nc3ncc(cn3)C(=O)N4CCC45COC5"                                                                                                               
XJ6 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1Cl)CC(C2)Nc3ncc(cn3)C(=O)N4CCC45COC5"                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XJ6 "SYSTEMATIC NAME" ACDLabs              12.01 "(2-{[(2S)-5-chloro-2,3-dihydro-1H-inden-2-yl]amino}pyrimidin-5-yl)(6-oxa-1-azaspiro[3.3]heptan-1-yl)methanone"           
XJ6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[2-[[(2~{R})-5-chloranyl-2,3-dihydro-1~{H}-inden-2-yl]amino]pyrimidin-5-yl]-(6-oxa-1-azaspiro[3.3]heptan-1-yl)methanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XJ6 "Create component" 2023-06-07 RCSB 
XJ6 "Initial release"  2024-12-18 RCSB 
# 
