data_VP6
# 
_chem_comp.id                                    VP6 
_chem_comp.name                                  "(3-azanyl-4-fluoranyl-5,7,8,9-tetrahydropyrido[4,3-c]azepin-6-yl)-[6-(2-oxidanylpropan-2-yl)-1H-indol-2-yl]methanone" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H23 F N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-02 
_chem_comp.pdbx_modified_date                    2023-12-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        382.431 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VP6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8K5Y 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VP6 CAN C1  C 0 1 N N N N N N 16.599 5.570  -15.768 -4.263 -1.668 0.719  CAN VP6 1  
VP6 CAO C2  C 0 1 N N N N N N 17.784 4.609  -15.705 -4.979 -0.521 -0.000 CAO VP6 2  
VP6 CAP C3  C 0 1 N N N N N N 18.001 3.945  -17.047 -4.076 -0.041 -1.140 CAP VP6 3  
VP6 CAQ C4  C 0 1 Y N N N N N 18.677 4.756  -18.001 -3.115 1.032  -0.702 CAQ VP6 4  
VP6 CAW C5  C 0 1 Y N N N N N 19.894 4.257  -18.474 -3.079 2.199  -1.455 CAW VP6 5  
VP6 NAV N1  N 0 1 Y N N N N N 20.629 4.979  -19.466 -2.214 3.157  -1.198 NAV VP6 6  
VP6 CAU C6  C 0 1 Y N N N N N 20.185 6.205  -19.880 -1.339 3.055  -0.210 CAU VP6 7  
VP6 NAX N2  N 0 1 N N N N N N 20.845 6.928  -20.786 -0.412 4.069  0.005  NAX VP6 8  
VP6 CAT C7  C 0 1 Y N N N N N 18.990 6.717  -19.407 -1.346 1.934  0.615  CAT VP6 9  
VP6 FAY F1  F 0 1 N N N N N N 18.491 7.979  -19.839 -0.471 1.836  1.640  FAY VP6 10 
VP6 CAR C8  C 0 1 Y N N N N N 18.236 6.012  -18.433 -2.260 0.916  0.373  CAR VP6 11 
VP6 CAS C9  C 0 1 N N N N N N 17.035 6.636  -18.052 -2.318 -0.231 1.342  CAS VP6 12 
VP6 NAM N3  N 0 1 N N N N N N 16.992 6.771  -16.552 -2.822 -1.449 0.707  NAM VP6 13 
VP6 CAK C10 C 0 1 N N N N N N 17.321 8.032  -16.067 -1.985 -2.336 0.133  CAK VP6 14 
VP6 OAL O1  O 0 1 N N N N N N 17.636 8.917  -16.907 -2.414 -3.395 -0.285 OAL VP6 15 
VP6 CAB C11 C 0 1 Y N N N N N 17.514 8.384  -14.715 -0.553 -2.023 0.012  CAB VP6 16 
VP6 CAA C12 C 0 1 Y N N N N N 17.768 7.624  -13.516 0.409  -2.888 -0.402 CAA VP6 17 
VP6 CAE C13 C 0 1 Y N N N N N 17.881 8.572  -12.521 1.646  -2.199 -0.377 CAE VP6 18 
VP6 CAF C14 C 0 1 Y N N N N N 18.207 8.468  -11.157 2.960  -2.570 -0.692 CAF VP6 19 
VP6 CAG C15 C 0 1 Y N N N N N 18.196 9.640  -10.394 3.971  -1.662 -0.565 CAG VP6 20 
VP6 CAH C16 C 0 1 Y N N N N N 17.917 10.925 -10.961 3.710  -0.370 -0.126 CAH VP6 21 
VP6 CAJ C17 C 0 1 N N N N N N 17.964 12.117 -10.122 4.842  0.615  0.007  CAJ VP6 22 
VP6 CBA C18 C 0 1 N N N N N N 19.407 12.269 -9.509  6.134  -0.133 0.342  CBA VP6 23 
VP6 CBB C19 C 0 1 N N N N N N 17.765 13.392 -10.882 5.018  1.371  -1.312 CBB VP6 24 
VP6 OAZ O2  O 0 1 N N N N N N 16.957 12.026 -9.051  4.545  1.544  1.051  OAZ VP6 25 
VP6 CAI C20 C 0 1 Y N N N N N 17.691 10.967 -12.353 2.427  0.018  0.189  CAI VP6 26 
VP6 CAD C21 C 0 1 Y N N N N N 17.642 9.829  -13.057 1.379  -0.890 0.068  CAD VP6 27 
VP6 NAC N4  N 0 1 Y N N N N N 17.406 9.697  -14.387 0.026  -0.801 0.295  NAC VP6 28 
VP6 H1  H1  H 0 1 N N N N N N 16.314 5.871  -14.749 -4.612 -1.720 1.750  H1  VP6 29 
VP6 H2  H2  H 0 1 N N N N N N 15.747 5.074  -16.256 -4.487 -2.607 0.213  H2  VP6 30 
VP6 H3  H3  H 0 1 N N N N N N 17.584 3.837  -14.947 -5.927 -0.874 -0.405 H3  VP6 31 
VP6 H4  H4  H 0 1 N N N N N N 18.689 5.169  -15.428 -5.158 0.297  0.698  H4  VP6 32 
VP6 H5  H5  H 0 1 N N N N N N 17.018 3.675  -17.460 -3.507 -0.890 -1.520 H5  VP6 33 
VP6 H6  H6  H 0 1 N N N N N N 18.595 3.033  -16.888 -4.700 0.353  -1.942 H6  VP6 34 
VP6 H7  H7  H 0 1 N N N N N N 20.280 3.324  -18.090 -3.776 2.322  -2.272 H7  VP6 35 
VP6 H8  H8  H 0 1 N N N N N N 21.663 6.432  -21.077 -0.407 4.851  -0.570 H8  VP6 36 
VP6 H9  H9  H 0 1 N N N N N N 20.255 7.090  -21.577 0.230  3.995  0.728  H9  VP6 37 
VP6 H10 H10 H 0 1 N N N N N N 16.979 7.634  -18.512 -1.318 -0.420 1.730  H10 VP6 38 
VP6 H11 H11 H 0 1 N N N N N N 16.183 6.028  -18.390 -2.975 0.036  2.170  H11 VP6 39 
VP6 H12 H12 H 0 1 N N N N N N 17.851 6.552  -13.419 0.258  -3.916 -0.697 H12 VP6 40 
VP6 H13 H13 H 0 1 N N N N N N 18.457 7.515  -10.714 3.173  -3.573 -1.034 H13 VP6 41 
VP6 H14 H14 H 0 1 N N N N N N 18.406 9.573  -9.337  4.983  -1.951 -0.808 H14 VP6 42 
VP6 H15 H15 H 0 1 N N N N N N 19.444 13.168 -8.876  6.360  -0.842 -0.455 H15 VP6 43 
VP6 H16 H16 H 0 1 N N N N N N 19.642 11.383 -8.902  6.952  0.580  0.437  H16 VP6 44 
VP6 H17 H17 H 0 1 N N N N N N 20.142 12.362 -10.322 6.009  -0.671 1.281  H17 VP6 45 
VP6 H18 H18 H 0 1 N N N N N N 17.813 14.244 -10.188 4.098  1.904  -1.551 H18 VP6 46 
VP6 H19 H19 H 0 1 N N N N N N 18.554 13.493 -11.642 5.837  2.084  -1.216 H19 VP6 47 
VP6 H20 H20 H 0 1 N N N N N N 16.782 13.375 -11.375 5.244  0.662  -2.109 H20 VP6 48 
VP6 H21 H21 H 0 1 N N N N N N 16.997 12.807 -8.511  4.421  1.134  1.918  H21 VP6 49 
VP6 H22 H22 H 0 1 N N N N N N 17.558 11.916 -12.850 2.235  1.025  0.530  H22 VP6 50 
VP6 H23 H23 H 0 1 N N N N N N 17.189 10.441 -15.019 -0.444 -0.012 0.605  H23 VP6 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VP6 NAX CAU SING N N 1  
VP6 CAU NAV DOUB Y N 2  
VP6 CAU CAT SING Y N 3  
VP6 FAY CAT SING N N 4  
VP6 NAV CAW SING Y N 5  
VP6 CAT CAR DOUB Y N 6  
VP6 CAW CAQ DOUB Y N 7  
VP6 CAR CAS SING N N 8  
VP6 CAR CAQ SING Y N 9  
VP6 CAS NAM SING N N 10 
VP6 CAQ CAP SING N N 11 
VP6 CAP CAO SING N N 12 
VP6 OAL CAK DOUB N N 13 
VP6 NAM CAK SING N N 14 
VP6 NAM CAN SING N N 15 
VP6 CAK CAB SING N N 16 
VP6 CAN CAO SING N N 17 
VP6 CAB NAC SING Y N 18 
VP6 CAB CAA DOUB Y N 19 
VP6 NAC CAD SING Y N 20 
VP6 CAA CAE SING Y N 21 
VP6 CAD CAE DOUB Y N 22 
VP6 CAD CAI SING Y N 23 
VP6 CAE CAF SING Y N 24 
VP6 CAI CAH DOUB Y N 25 
VP6 CAF CAG DOUB Y N 26 
VP6 CAH CAG SING Y N 27 
VP6 CAH CAJ SING N N 28 
VP6 CBB CAJ SING N N 29 
VP6 CAJ CBA SING N N 30 
VP6 CAJ OAZ SING N N 31 
VP6 CAN H1  SING N N 32 
VP6 CAN H2  SING N N 33 
VP6 CAO H3  SING N N 34 
VP6 CAO H4  SING N N 35 
VP6 CAP H5  SING N N 36 
VP6 CAP H6  SING N N 37 
VP6 CAW H7  SING N N 38 
VP6 NAX H8  SING N N 39 
VP6 NAX H9  SING N N 40 
VP6 CAS H10 SING N N 41 
VP6 CAS H11 SING N N 42 
VP6 CAA H12 SING N N 43 
VP6 CAF H13 SING N N 44 
VP6 CAG H14 SING N N 45 
VP6 CBA H15 SING N N 46 
VP6 CBA H16 SING N N 47 
VP6 CBA H17 SING N N 48 
VP6 CBB H18 SING N N 49 
VP6 CBB H19 SING N N 50 
VP6 CBB H20 SING N N 51 
VP6 OAZ H21 SING N N 52 
VP6 CAI H22 SING N N 53 
VP6 NAC H23 SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VP6 InChI            InChI                1.06  "InChI=1S/C21H23FN4O2/c1-21(2,28)14-6-5-12-8-17(25-16(12)9-14)20(27)26-7-3-4-13-10-24-19(23)18(22)15(13)11-26/h5-6,8-10,25,28H,3-4,7,11H2,1-2H3,(H2,23,24)" 
VP6 InChIKey         InChI                1.06  GKQSKUWMVJZQIF-UHFFFAOYSA-N                                                                                                                                 
VP6 SMILES_CANONICAL CACTVS               3.385 "CC(C)(O)c1ccc2cc([nH]c2c1)C(=O)N3CCCc4cnc(N)c(F)c4C3"                                                                                                      
VP6 SMILES           CACTVS               3.385 "CC(C)(O)c1ccc2cc([nH]c2c1)C(=O)N3CCCc4cnc(N)c(F)c4C3"                                                                                                      
VP6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(c1ccc2cc([nH]c2c1)C(=O)N3CCCc4cnc(c(c4C3)F)N)O"                                                                                                      
VP6 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)(c1ccc2cc([nH]c2c1)C(=O)N3CCCc4cnc(c(c4C3)F)N)O"                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           VP6 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(3-azanyl-4-fluoranyl-5,7,8,9-tetrahydropyrido[4,3-c]azepin-6-yl)-[6-(2-oxidanylpropan-2-yl)-1~{H}-indol-2-yl]methanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VP6 "Create component" 2023-08-02 PDBJ 
VP6 "Initial release"  2023-12-06 RCSB 
# 
