data_VH6
# 
_chem_comp.id                                    VH6 
_chem_comp.name                                  Plerixafor 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H54 N8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         
;1,1'-[1,4-phenylenebis(methylene)]bis(1,4,8,11-tetraazacyclotetradecane); AMD3100
;
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-12 
_chem_comp.pdbx_modified_date                    2024-03-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        502.782 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VH6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8U4P 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VH6 C10  C1  C 0 1 N N N N N N 131.568 127.873 174.239 -1.972 0.169  1.334  C10  VH6 1  
VH6 C13  C2  C 0 1 N N N N N N 130.289 127.344 176.982 -3.791 3.169  0.459  C13  VH6 2  
VH6 C15  C3  C 0 1 N N N N N N 129.899 127.857 171.704 -2.820 -1.552 -0.297 C15  VH6 3  
VH6 C17  C4  C 0 1 Y N N N N N 131.108 129.509 170.144 -0.602 -2.712 -0.292 C17  VH6 4  
VH6 C20  C5  C 0 1 Y N N N N N 129.155 129.480 168.268 0.725  -0.325 -0.721 C20  VH6 5  
VH6 C21  C6  C 0 1 Y N N N N N 129.046 128.721 169.423 -0.654 -0.342 -0.630 C21  VH6 6  
VH6 C22  C7  C 0 1 N N N N N N 130.396 131.150 166.703 2.944  -1.483 -0.702 C22  VH6 7  
VH6 C24  C8  C 0 1 N N N N N N 128.601 132.532 165.531 3.230  -1.690 1.693  C24  VH6 8  
VH6 C26  C9  C 0 1 N N N N N N 127.628 134.477 164.031 2.625  0.651  2.323  C26  VH6 9  
VH6 C28  C10 C 0 1 N N N N N N 129.662 134.339 162.583 3.680  2.700  1.580  C28  VH6 10 
VH6 C02  C11 C 0 1 N N N N N N 126.763 126.756 175.557 -6.248 1.737  -1.789 C02  VH6 11 
VH6 C03  C12 C 0 1 N N N N N N 126.394 128.266 175.419 -7.106 0.670  -1.105 C03  VH6 12 
VH6 C05  C13 C 0 1 N N N N N N 125.909 129.647 173.404 -6.559 -1.543 -0.290 C05  VH6 13 
VH6 C06  C14 C 0 1 N N N N N N 126.996 129.199 172.386 -5.225 -2.291 -0.269 C06  VH6 14 
VH6 C07  C15 C 0 1 N N N N N N 128.452 129.659 172.710 -4.638 -2.247 1.144  C07  VH6 15 
VH6 C09  C16 C 0 1 N N N N N N 130.614 128.993 173.756 -2.849 -0.875 2.027  C09  VH6 16 
VH6 C12  C17 C 0 1 N N N N N N 130.922 126.301 176.036 -2.482 2.378  0.483  C12  VH6 17 
VH6 C14  C18 C 0 1 N N N N N N 128.789 127.619 176.725 -4.420 3.073  -0.932 C14  VH6 18 
VH6 C16  C19 C 0 1 Y N N N N N 130.019 128.696 170.432 -1.318 -1.535 -0.409 C16  VH6 19 
VH6 C18  C20 C 0 1 Y N N N N N 131.219 130.268 168.985 0.776  -2.696 -0.389 C18  VH6 20 
VH6 C19  C21 C 0 1 Y N N N N N 130.253 130.305 167.976 1.440  -1.502 -0.603 C19  VH6 21 
VH6 C25  C22 C 0 1 N N N N N N 127.868 133.895 165.456 2.188  -0.582 1.529  C25  VH6 22 
VH6 C29  C23 C 0 1 N N N N N N 131.118 134.871 162.510 4.071  3.189  0.184  C29  VH6 23 
VH6 C31  C24 C 0 1 N N N N N N 133.101 135.247 163.932 5.777  2.379  -1.332 C31  VH6 24 
VH6 C32  C25 C 0 1 N N N N N N 133.583 135.434 165.380 6.796  1.248  -1.174 C32  VH6 25 
VH6 C33  C26 C 0 1 N N N N N N 134.037 134.140 166.087 6.331  0.028  -1.972 C33  VH6 26 
VH6 C35  C27 C 0 1 N N N N N N 131.918 133.419 167.219 5.349  -2.055 -1.224 C35  VH6 27 
VH6 C36  C28 C 0 1 N N N N N N 130.509 133.669 166.587 4.961  -2.477 0.194  C36  VH6 28 
VH6 N01  N1  N 0 1 N N N N N N 128.169 126.540 175.928 -5.847 2.749  -0.804 N01  VH6 29 
VH6 N04  N2  N 0 1 N N N N N N 125.472 128.545 174.299 -6.609 -0.664 -1.466 N04  VH6 30 
VH6 N08  N3  N 0 1 N N N N N N 129.424 128.530 172.973 -3.205 -1.930 1.069  N08  VH6 31 
VH6 N11  N4  N 0 1 N N N N N N 130.849 126.630 174.600 -2.453 1.515  1.672  N11  VH6 32 
VH6 N23  N5  N 0 1 N N N N N N 129.594 132.459 166.689 3.516  -2.290 0.383  N23  VH6 33 
VH6 N27  N6  N 0 1 N N N N N N 128.819 135.150 163.479 2.487  1.849  1.484  N27  VH6 34 
VH6 N30  N7  N 0 1 N N N N N N 131.626 135.294 163.831 5.512  2.985  -0.020 N30  VH6 35 
VH6 N34  N8  N 0 1 N N N N N N 132.963 133.141 166.203 6.533  -1.186 -1.170 N34  VH6 36 
VH6 H102 H1  H 0 0 N N N N N N 132.282 127.646 173.433 -0.941 0.057  1.668  H102 VH6 37 
VH6 H101 H2  H 0 0 N N N N N N 132.115 128.233 175.123 -2.021 0.026  0.255  H101 VH6 38 
VH6 H132 H3  H 0 0 N N N N N N 130.400 126.982 178.015 -4.479 2.757  1.198  H132 VH6 39 
VH6 H131 H4  H 0 0 N N N N N N 130.837 128.291 176.865 -3.588 4.214  0.695  H131 VH6 40 
VH6 H151 H5  H 0 0 N N N N N N 130.895 127.439 171.912 -3.213 -0.561 -0.524 H151 VH6 41 
VH6 H152 H6  H 0 0 N N N N N N 129.196 127.039 171.488 -3.229 -2.275 -1.003 H152 VH6 42 
VH6 H171 H7  H 0 0 N N N N N N 131.914 129.554 170.861 -1.121 -3.644 -0.119 H171 VH6 43 
VH6 H201 H8  H 0 0 N N N N N N 128.348 129.434 167.551 1.243  0.608  -0.886 H201 VH6 44 
VH6 H211 H9  H 0 0 N N N N N N 128.162 128.115 169.553 -1.213 0.577  -0.723 H211 VH6 45 
VH6 H221 H10 H 0 0 N N N N N N 131.460 131.402 166.581 3.249  -1.898 -1.663 H221 VH6 46 
VH6 H222 H11 H 0 0 N N N N N N 130.064 130.539 165.851 3.300  -0.457 -0.619 H222 VH6 47 
VH6 H241 H12 H 0 0 N N N N N N 129.147 132.374 164.589 4.146  -1.270 2.108  H241 VH6 48 
VH6 H242 H13 H 0 0 N N N N N N 127.852 131.736 165.659 2.844  -2.455 2.366  H242 VH6 49 
VH6 H262 H14 H 0 0 N N N N N N 127.346 133.654 163.358 1.999  0.753  3.209  H262 VH6 50 
VH6 H261 H15 H 0 0 N N N N N N 126.805 135.206 164.083 3.667  0.538  2.625  H261 VH6 51 
VH6 H281 H16 H 0 0 N N N N N N 129.681 133.304 162.955 4.502  2.126  2.008  H281 VH6 52 
VH6 H282 H17 H 0 0 N N N N N N 129.227 134.358 161.573 3.464  3.557  2.218  H282 VH6 53 
VH6 H022 H18 H 0 0 N N N N N N 126.574 126.260 174.594 -5.359 1.270  -2.213 H022 VH6 54 
VH6 H021 H19 H 0 0 N N N N N N 126.123 126.308 176.332 -6.824 2.211  -2.584 H021 VH6 55 
VH6 H032 H20 H 0 0 N N N N N N 125.917 128.595 176.354 -7.050 0.799  -0.024 H032 VH6 56 
VH6 H031 H21 H 0 0 N N N N N N 127.320 128.838 175.259 -8.141 0.773  -1.430 H031 VH6 57 
VH6 H052 H22 H 0 0 N N N N N N 125.035 130.015 172.846 -7.378 -2.261 -0.338 H052 VH6 58 
VH6 H051 H23 H 0 0 N N N N N N 126.319 130.460 174.021 -6.654 -0.944 0.616  H051 VH6 59 
VH6 H061 H24 H 0 0 N N N N N N 126.989 128.100 172.345 -5.385 -3.328 -0.563 H061 VH6 60 
VH6 H062 H25 H 0 0 N N N N N N 126.724 129.604 171.400 -4.532 -1.818 -0.965 H062 VH6 61 
VH6 H072 H26 H 0 0 N N N N N N 128.826 130.242 171.855 -5.150 -1.482 1.726  H072 VH6 62 
VH6 H071 H27 H 0 0 N N N N N N 128.419 130.299 173.604 -4.770 -3.218 1.622  H071 VH6 63 
VH6 H091 H28 H 0 0 N N N N N N 130.248 129.533 174.642 -2.302 -1.313 2.862  H091 VH6 64 
VH6 H092 H29 H 0 0 N N N N N N 131.192 129.680 173.121 -3.757 -0.399 2.398  H092 VH6 65 
VH6 H122 H30 H 0 0 N N N N N N 130.406 125.342 176.192 -2.413 1.763  -0.414 H122 VH6 66 
VH6 H121 H31 H 0 0 N N N N N N 131.983 126.195 176.307 -1.640 3.069  0.515  H121 VH6 67 
VH6 H141 H32 H 0 0 N N N N N N 128.269 127.694 177.691 -4.309 4.027  -1.448 H141 VH6 68 
VH6 H142 H33 H 0 0 N N N N N N 128.688 128.569 176.180 -3.920 2.291  -1.504 H142 VH6 69 
VH6 H181 H34 H 0 0 N N N N N N 132.108 130.867 168.856 1.335  -3.615 -0.297 H181 VH6 70 
VH6 H252 H35 H 0 0 N N N N N N 126.886 133.774 165.937 2.098  -0.321 0.475  H252 VH6 71 
VH6 H251 H36 H 0 0 N N N N N N 128.465 134.627 166.020 1.225  -0.931 1.901  H251 VH6 72 
VH6 H292 H37 H 0 0 N N N N N N 131.767 134.073 162.120 3.515  2.627  -0.567 H292 VH6 73 
VH6 H291 H38 H 0 0 N N N N N N 131.146 135.733 161.827 3.837  4.249  0.092  H291 VH6 74 
VH6 H312 H39 H 0 0 N N N N N N 133.452 134.272 163.564 6.175  3.135  -2.008 H312 VH6 75 
VH6 H311 H40 H 0 0 N N N N N N 133.526 136.048 163.310 4.850  1.978  -1.741 H311 VH6 76 
VH6 H321 H41 H 0 0 N N N N N N 134.432 136.133 165.370 7.765  1.579  -1.547 H321 VH6 77 
VH6 H322 H42 H 0 0 N N N N N N 132.757 135.869 165.961 6.883  0.982  -0.121 H322 VH6 78 
VH6 H332 H43 H 0 0 N N N N N N 134.865 133.699 165.513 5.274  0.133  -2.213 H332 VH6 79 
VH6 H331 H44 H 0 0 N N N N N N 134.387 134.397 167.098 6.909  -0.045 -2.893 H331 VH6 80 
VH6 H352 H45 H 0 0 N N N N N N 131.850 132.557 167.899 5.575  -2.941 -1.818 H352 VH6 81 
VH6 H351 H46 H 0 0 N N N N N N 132.211 134.313 167.789 4.521  -1.513 -1.681 H351 VH6 82 
VH6 H361 H47 H 0 0 N N N N N N 130.035 134.513 167.109 5.214  -3.527 0.343  H361 VH6 83 
VH6 H362 H48 H 0 0 N N N N N N 130.640 133.922 165.525 5.504  -1.867 0.916  H362 VH6 84 
VH6 H011 H49 H 0 0 N N N N N N 128.221 125.695 176.460 -6.415 3.579  -0.886 H011 VH6 85 
VH6 H2   H51 H 0 1 N N N N N N 125.385 127.713 173.751 -7.169 -1.072 -2.199 H2   VH6 86 
VH6 H111 H54 H 0 0 N N N N N N 129.887 126.737 174.349 -3.361 1.475  2.112  H111 VH6 87 
VH6 H6   H57 H 0 1 N N N N N N 128.508 135.950 162.966 2.297  1.598  0.525  H6   VH6 88 
VH6 H301 H59 H 0 0 N N N N N N 131.326 136.233 164.001 6.018  3.851  0.087  H301 VH6 89 
VH6 H8   H61 H 0 1 N N N N N N 132.513 133.072 165.313 7.359  -1.683 -1.467 H8   VH6 90 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VH6 C02 N01  SING N N 1  
VH6 C03 C02  SING N N 2  
VH6 N04 C03  SING N N 3  
VH6 C05 N04  SING N N 4  
VH6 C06 C05  SING N N 5  
VH6 C07 C06  SING N N 6  
VH6 N08 C07  SING N N 7  
VH6 C10 C09  SING N N 8  
VH6 N11 C10  SING N N 9  
VH6 C12 N11  SING N N 10 
VH6 C13 C12  SING N N 11 
VH6 C14 C13  SING N N 12 
VH6 C09 N08  SING N N 13 
VH6 C15 N08  SING N N 14 
VH6 C16 C15  SING N N 15 
VH6 C17 C16  DOUB Y N 16 
VH6 C18 C17  SING Y N 17 
VH6 C19 C18  DOUB Y N 18 
VH6 C21 C20  DOUB Y N 19 
VH6 C20 C19  SING Y N 20 
VH6 C22 C19  SING N N 21 
VH6 N23 C22  SING N N 22 
VH6 C24 N23  SING N N 23 
VH6 C25 C24  SING N N 24 
VH6 C26 C25  SING N N 25 
VH6 N27 C26  SING N N 26 
VH6 C28 N27  SING N N 27 
VH6 C29 C28  SING N N 28 
VH6 N30 C29  SING N N 29 
VH6 C31 N30  SING N N 30 
VH6 C32 C31  SING N N 31 
VH6 C33 C32  SING N N 32 
VH6 N34 C33  SING N N 33 
VH6 C35 N34  SING N N 34 
VH6 C36 C35  SING N N 35 
VH6 N01 C14  SING N N 36 
VH6 C16 C21  SING Y N 37 
VH6 N23 C36  SING N N 38 
VH6 C10 H102 SING N N 39 
VH6 C10 H101 SING N N 40 
VH6 C13 H132 SING N N 41 
VH6 C13 H131 SING N N 42 
VH6 C15 H151 SING N N 43 
VH6 C15 H152 SING N N 44 
VH6 C17 H171 SING N N 45 
VH6 C20 H201 SING N N 46 
VH6 C21 H211 SING N N 47 
VH6 C22 H221 SING N N 48 
VH6 C22 H222 SING N N 49 
VH6 C24 H241 SING N N 50 
VH6 C24 H242 SING N N 51 
VH6 C26 H262 SING N N 52 
VH6 C26 H261 SING N N 53 
VH6 C28 H281 SING N N 54 
VH6 C28 H282 SING N N 55 
VH6 C02 H022 SING N N 56 
VH6 C02 H021 SING N N 57 
VH6 C03 H032 SING N N 58 
VH6 C03 H031 SING N N 59 
VH6 C05 H052 SING N N 60 
VH6 C05 H051 SING N N 61 
VH6 C06 H061 SING N N 62 
VH6 C06 H062 SING N N 63 
VH6 C07 H072 SING N N 64 
VH6 C07 H071 SING N N 65 
VH6 C09 H091 SING N N 66 
VH6 C09 H092 SING N N 67 
VH6 C12 H122 SING N N 68 
VH6 C12 H121 SING N N 69 
VH6 C14 H141 SING N N 70 
VH6 C14 H142 SING N N 71 
VH6 C18 H181 SING N N 72 
VH6 C25 H252 SING N N 73 
VH6 C25 H251 SING N N 74 
VH6 C29 H292 SING N N 75 
VH6 C29 H291 SING N N 76 
VH6 C31 H312 SING N N 77 
VH6 C31 H311 SING N N 78 
VH6 C32 H321 SING N N 79 
VH6 C32 H322 SING N N 80 
VH6 C33 H332 SING N N 81 
VH6 C33 H331 SING N N 82 
VH6 C35 H352 SING N N 83 
VH6 C35 H351 SING N N 84 
VH6 C36 H361 SING N N 85 
VH6 C36 H362 SING N N 86 
VH6 N01 H011 SING N N 87 
VH6 N04 H2   SING N N 88 
VH6 N11 H111 SING N N 89 
VH6 N27 H6   SING N N 90 
VH6 N30 H301 SING N N 91 
VH6 N34 H8   SING N N 92 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VH6 SMILES           ACDLabs              12.01 "C1NCCCNCCN(Cc2ccc(CN3CCCNCCNCCCNCC3)cc2)CCCNC1"                                                                                                       
VH6 InChI            InChI                1.06  "InChI=1S/C28H54N8/c1-9-29-15-17-31-13-3-21-35(23-19-33-11-1)25-27-5-7-28(8-6-27)26-36-22-4-14-32-18-16-30-10-2-12-34-20-24-36/h5-8,29-34H,1-4,9-26H2" 
VH6 InChIKey         InChI                1.06  YIQPUIGJQJDJOS-UHFFFAOYSA-N                                                                                                                            
VH6 SMILES_CANONICAL CACTVS               3.385 "C1CNCCNCCCN(CCNC1)Cc2ccc(CN3CCCNCCNCCCNCC3)cc2"                                                                                                       
VH6 SMILES           CACTVS               3.385 "C1CNCCNCCCN(CCNC1)Cc2ccc(CN3CCCNCCNCCCNCC3)cc2"                                                                                                       
VH6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CN2CCCNCCNCCCNCC2)CN3CCCNCCNCCCNCC3"                                                                                                         
VH6 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CN2CCCNCCNCCCNCC2)CN3CCCNCCNCCCNCC3"                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VH6 "SYSTEMATIC NAME" ACDLabs              12.01 "1,1'-[1,4-phenylenebis(methylene)]bis(1,4,8,11-tetraazacyclotetradecane)"                        
VH6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[[4-(1,4,8,11-tetrazacyclotetradec-1-ylmethyl)phenyl]methyl]-1,4,8,11-tetrazacyclotetradecane" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VH6 "Create component" 2023-09-12 RCSB 
VH6 "Initial release"  2024-03-13 RCSB 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 VH6 "1,1'-[1,4-phenylenebis(methylene)]bis(1,4,8,11-tetraazacyclotetradecane)" PDB    ? 
2 VH6 AMD3100                                                                    AUTHOR ? 
# 
