data_V56
# 
_chem_comp.id                                    V56 
_chem_comp.name                                  "(4S,7S,17S)-17-(3-chlorophenyl)-7-(hydroxymethyl)-4-(2-methylpropyl)-1-oxa-3,6,11-triazacycloheptadecane-2,5,10-trione" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H36 Cl N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-09-30 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        482.013 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     V56 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5TG1 
_chem_comp.pdbx_subcomponent_list                "7C0 LEU GAU" 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
V56 O01  O1  O  0 1 N N N N N N 74.895 -51.326 133.371 -0.160 0.269  -0.065 O01  7C0 1  
V56 C02  C1  C  0 1 N N N N N N 75.067 -52.495 133.521 -0.087 1.417  0.326  C02  7C0 2  
V56 N17  N1  N  0 1 N N N N N N 71.772 -50.880 130.631 -0.234 -4.521 -0.132 N17  7C0 3  
V56 C18  C2  C  0 1 N N N N N N 70.703 -51.782 130.192 0.701  -4.744 0.998  C18  7C0 4  
V56 C19  C3  C  0 1 N N N N N N 71.050 -53.150 130.790 1.952  -3.893 0.767  C19  7C0 5  
V56 C20  C4  C  0 1 N N N N N N 71.057 -53.029 132.300 2.055  -2.830 1.862  C20  7C0 6  
V56 C21  C5  C  0 1 N N N N N N 71.673 -54.250 133.051 2.651  -1.549 1.275  C21  7C0 7  
V56 C22  C6  C  0 1 N N N N N N 71.839 -53.871 134.539 1.540  -0.532 1.016  C22  7C0 8  
V56 O25  O2  O  0 1 N N N N N N 74.128 -53.401 134.090 1.029  1.847  0.944  O25  7C0 9  
V56 C26  C7  C  0 1 N N S N N N 72.958 -52.836 134.667 2.105  0.886  1.106  C26  7C0 10 
V56 C27  C8  C  0 1 Y N N N N N 73.240 -52.430 136.117 3.128  1.089  0.018  C27  7C0 11 
V56 C28  C9  C  0 1 Y N N N N N 73.369 -53.350 137.134 2.724  1.479  -1.246 C28  7C0 12 
V56 C29  C10 C  0 1 Y N N N N N 73.617 -52.907 138.436 3.662  1.666  -2.244 C29  7C0 13 
V56 C30  C11 C  0 1 Y N N N N N 73.728 -51.554 138.688 5.003  1.463  -1.980 C30  7C0 14 
V56 C31  C12 C  0 1 Y N N N N N 73.594 -50.651 137.645 5.408  1.074  -0.716 C31  7C0 15 
V56 CL32 CL1 CL 0 0 N N N N N N 73.726 -48.902 137.897 7.093  0.820  -0.383 CL32 7C0 16 
V56 C33  C13 C  0 1 Y N N N N N 73.346 -51.081 136.367 4.470  0.892  0.285  C33  7C0 17 
V56 N03  N2  N  0 1 N N N N N N 76.298 -53.135 133.103 -1.120 2.261  0.135  N    LEU 18 
V56 C04  C14 C  0 1 N N S N N N 77.146 -52.417 132.199 -2.490 1.812  0.390  CA   LEU 19 
V56 C09  C15 C  0 1 N N N N N N 76.380 -52.117 130.908 -2.820 0.661  -0.526 C    LEU 20 
V56 O24  O3  O  0 1 N N N N N N 75.578 -52.846 130.396 -2.456 0.671  -1.683 O    LEU 21 
V56 C05  C16 C  0 1 N N N N N N 78.363 -53.243 131.885 -3.461 2.965  0.130  CB   LEU 22 
V56 C06  C17 C  0 1 N N N N N N 79.200 -53.557 133.144 -3.186 4.097  1.122  CG   LEU 23 
V56 C07  C18 C  0 1 N N N N N N 80.345 -54.531 132.785 -4.056 5.306  0.770  CD1  LEU 24 
V56 C08  C19 C  0 1 N N N N N N 79.722 -52.320 133.888 -3.517 3.625  2.539  CD2  LEU 25 
V56 N10  N3  N  0 1 N N N N N N 76.698 -50.847 130.313 -3.535 -0.390 -0.034 N    GAU 26 
V56 C11  C20 C  0 1 N N S N N N 76.027 -50.437 129.078 -3.828 -1.482 -0.986 CA   GAU 27 
V56 C14  C22 C  0 1 N N N N N N 75.043 -49.298 129.376 -3.579 -2.822 -0.291 CB   GAU 28 
V56 C15  C23 C  0 1 N N N N N N 73.963 -49.700 130.366 -2.347 -3.492 -0.903 CG   GAU 29 
V56 C16  C24 C  0 1 N N N N N N 72.899 -50.630 129.760 -1.337 -3.771 0.180  CD   GAU 30 
V56 O23  O4  O  0 1 N N N N N N 72.974 -51.114 128.677 -1.497 -3.342 1.303  OE1  GAU 31 
V56 C12  C21 C  0 1 N N N N N N 77.117 -49.997 128.066 -5.291 -1.398 -1.427 C    GAU 32 
V56 O13  O5  O  0 1 N N N N N N 77.868 -51.149 127.747 -5.494 -0.198 -2.177 OXT  GAU 33 
V56 H2   H2  H  0 1 N N N N N N 69.729 -51.435 130.567 0.224  -4.448 1.932  H22  7C0 34 
V56 H3   H3  H  0 1 N N N N N N 70.675 -51.839 129.094 0.978  -5.797 1.042  H23  7C0 35 
V56 H4   H4  H  0 1 N N N N N N 70.298 -53.891 130.481 2.836  -4.531 0.796  H24  7C0 36 
V56 H5   H5  H  0 1 N N N N N N 72.043 -53.467 130.439 1.887  -3.407 -0.206 H25  7C0 37 
V56 H6   H6  H  0 1 N N N N N N 71.637 -52.134 132.569 1.061  -2.620 2.259  H26  7C0 38 
V56 H7   H7  H  0 1 N N N N N N 70.017 -52.908 132.638 2.696  -3.195 2.664  H27  7C0 39 
V56 H8   H8  H  0 1 N N N N N N 71.004 -55.118 132.961 3.372  -1.129 1.977  H28  7C0 40 
V56 H9   H9  H  0 1 N N N N N N 72.654 -54.497 132.618 3.152  -1.779 0.335  H29  7C0 41 
V56 H10  H10 H  0 1 N N N N N N 70.898 -53.446 134.919 1.126  -0.693 0.021  H30  7C0 42 
V56 H11  H11 H  0 1 N N N N N N 72.097 -54.768 135.121 0.754  -0.655 1.761  H31  7C0 43 
V56 H12  H12 H  0 1 N N N N N N 72.663 -51.936 134.107 2.577  1.029  2.079  H32  7C0 44 
V56 H13  H13 H  0 1 N N N N N N 73.279 -54.406 136.927 1.676  1.637  -1.453 H33  7C0 45 
V56 H14  H14 H  0 1 N N N N N N 73.721 -53.619 139.241 3.346  1.970  -3.231 H34  7C0 46 
V56 H15  H15 H  0 1 N N N N N N 73.918 -51.202 139.691 5.736  1.609  -2.760 H35  7C0 47 
V56 H16  H16 H  0 1 N N N N N N 73.235 -50.368 135.564 4.785  0.592  1.273  H36  7C0 48 
V56 H1   H1  H  0 1 N N N N N N 71.722 -50.440 131.528 -0.077 -4.878 -1.020 H2   7C0 49 
V56 H17  H17 H  0 1 N N N N N N 76.547 -54.045 133.434 -0.955 3.167  -0.170 H    LEU 50 
V56 H18  H18 H  0 1 N N N N N N 77.463 -51.466 132.652 -2.580 1.488  1.427  HA   LEU 51 
V56 H19  H19 H  0 1 N N N N N N 78.039 -54.191 131.430 -3.326 3.332  -0.887 HB2  LEU 52 
V56 H20  H20 H  0 1 N N N N N N 78.991 -52.690 131.172 -4.485 2.613  0.255  HB3  LEU 53 
V56 H21  H21 H  0 1 N N N N N N 78.537 -54.091 133.840 -2.134 4.379  1.069  HG   LEU 54 
V56 H22  H22 H  0 1 N N N N N N 80.937 -54.750 133.686 -5.104 5.008  0.760  HD11 LEU 55 
V56 H23  H23 H  0 1 N N N N N N 79.921 -55.465 132.389 -3.908 6.089  1.514  HD12 LEU 56 
V56 H24  H24 H  0 1 N N N N N N 80.993 -54.071 132.024 -3.775 5.682  -0.214 HD13 LEU 57 
V56 H25  H25 H  0 1 N N N N N N 80.304 -52.638 134.766 -2.897 2.764  2.789  HD21 LEU 58 
V56 H26  H26 H  0 1 N N N N N N 80.364 -51.732 133.216 -3.321 4.432  3.245  HD22 LEU 59 
V56 H27  H27 H  0 1 N N N N N N 78.872 -51.703 134.215 -4.569 3.344  2.592  HD23 LEU 60 
V56 H28  H28 H  0 1 N N N N N N 77.374 -50.247 130.741 -3.833 -0.420 0.888  H    GAU 61 
V56 H29  H29 H  0 1 N N N N N N 75.472 -51.287 128.653 -3.176 -1.394 -1.855 HA   GAU 62 
V56 H32  H32 H  0 1 N N N N N N 75.604 -48.448 129.793 -3.410 -2.653 0.773  HB2  GAU 63 
V56 H33  H33 H  0 1 N N N N N N 74.562 -48.993 128.435 -4.447 -3.467 -0.423 HB3  GAU 64 
V56 H34  H34 H  0 1 N N N N N N 74.439 -50.218 131.211 -2.641 -4.429 -1.376 HG2  GAU 65 
V56 H35  H35 H  0 1 N N N N N N 73.465 -48.789 130.728 -1.906 -2.830 -1.649 HG3  GAU 66 
V56 H30  H30 H  0 1 N N N N N N 77.768 -49.234 128.518 -5.533 -2.260 -2.049 HO1  GAU 67 
V56 H31  H31 H  0 1 N N N N N N 76.648 -49.588 127.159 -5.936 -1.390 -0.549 HO2  GAU 68 
V56 H36  H36 H  0 1 N N N N N N 78.550 -50.921 127.126 -6.401 -0.079 -2.490 HXT  GAU 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
V56 O13 C12  SING N N 1  
V56 C12 C11  SING N N 2  
V56 O23 C16  DOUB N N 3  
V56 C11 C14  SING N N 4  
V56 C11 N10  SING N N 5  
V56 C14 C15  SING N N 6  
V56 C16 C15  SING N N 7  
V56 C16 N17  SING N N 8  
V56 C18 N17  SING N N 9  
V56 C18 C19  SING N N 10 
V56 N10 C09  SING N N 11 
V56 O24 C09  DOUB N N 12 
V56 C19 C20  SING N N 13 
V56 C09 C04  SING N N 14 
V56 C05 C04  SING N N 15 
V56 C05 C06  SING N N 16 
V56 C04 N03  SING N N 17 
V56 C20 C21  SING N N 18 
V56 C07 C06  SING N N 19 
V56 C21 C22  SING N N 20 
V56 N03 C02  SING N N 21 
V56 C06 C08  SING N N 22 
V56 O01 C02  DOUB N N 23 
V56 C02 O25  SING N N 24 
V56 O25 C26  SING N N 25 
V56 C22 C26  SING N N 26 
V56 C26 C27  SING N N 27 
V56 C27 C33  DOUB Y N 28 
V56 C27 C28  SING Y N 29 
V56 C33 C31  SING Y N 30 
V56 C28 C29  DOUB Y N 31 
V56 C31 CL32 SING N N 32 
V56 C31 C30  DOUB Y N 33 
V56 C29 C30  SING Y N 34 
V56 N17 H1   SING N N 35 
V56 C18 H2   SING N N 36 
V56 C18 H3   SING N N 37 
V56 C19 H4   SING N N 38 
V56 C19 H5   SING N N 39 
V56 C20 H6   SING N N 40 
V56 C20 H7   SING N N 41 
V56 C21 H8   SING N N 42 
V56 C21 H9   SING N N 43 
V56 C22 H10  SING N N 44 
V56 C22 H11  SING N N 45 
V56 C26 H12  SING N N 46 
V56 C28 H13  SING N N 47 
V56 C29 H14  SING N N 48 
V56 C30 H15  SING N N 49 
V56 C33 H16  SING N N 50 
V56 N03 H17  SING N N 51 
V56 C04 H18  SING N N 52 
V56 C05 H19  SING N N 53 
V56 C05 H20  SING N N 54 
V56 C06 H21  SING N N 55 
V56 C07 H22  SING N N 56 
V56 C07 H23  SING N N 57 
V56 C07 H24  SING N N 58 
V56 C08 H25  SING N N 59 
V56 C08 H26  SING N N 60 
V56 C08 H27  SING N N 61 
V56 N10 H28  SING N N 62 
V56 C11 H29  SING N N 63 
V56 C12 H30  SING N N 64 
V56 C12 H31  SING N N 65 
V56 C14 H32  SING N N 66 
V56 C14 H33  SING N N 67 
V56 C15 H34  SING N N 68 
V56 C15 H35  SING N N 69 
V56 O13 H36  SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
V56 SMILES           ACDLabs              12.01 "O=C1OC(CCCCCNC(CCC(NC(C(N1)CC(C)C)=O)CO)=O)c2cc(ccc2)Cl"                                                                                                                                                        
V56 InChI            InChI                1.03  "InChI=1S/C24H36ClN3O5/c1-16(2)13-20-23(31)27-19(15-29)10-11-22(30)26-12-5-3-4-9-21(33-24(32)28-20)17-7-6-8-18(25)14-17/h6-8,14,16,19-21,29H,3-5,9-13,15H2,1-2H3,(H,26,30)(H,27,31)(H,28,32)/t19-,20-,21-/m0/s1" 
V56 InChIKey         InChI                1.03  QEKFPTDBWSLGJK-ACRUOGEOSA-N                                                                                                                                                                                      
V56 SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@@H]1NC(=O)O[C@@H](CCCCCNC(=O)CC[C@@H](CO)NC1=O)c2cccc(Cl)c2"                                                                                                                                           
V56 SMILES           CACTVS               3.385 "CC(C)C[CH]1NC(=O)O[CH](CCCCCNC(=O)CC[CH](CO)NC1=O)c2cccc(Cl)c2"                                                                                                                                                 
V56 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)C[C@H]1C(=O)N[C@@H](CCC(=O)NCCCCC[C@H](OC(=O)N1)c2cccc(c2)Cl)CO"                                                                                                                                           
V56 SMILES           "OpenEye OEToolkits" 2.0.6 "CC(C)CC1C(=O)NC(CCC(=O)NCCCCCC(OC(=O)N1)c2cccc(c2)Cl)CO"                                                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
V56 "SYSTEMATIC NAME" ACDLabs              12.01 "(4S,7S,17S)-17-(3-chlorophenyl)-7-(hydroxymethyl)-4-(2-methylpropyl)-1-oxa-3,6,11-triazacycloheptadecane-2,5,10-trione"          
V56 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(4~{S},7~{S},17~{S})-17-(3-chlorophenyl)-7-(hydroxymethyl)-4-(2-methylpropyl)-1-oxa-3,6,11-triazacycloheptadecane-2,5,10-trione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
V56 "Create component"         2016-09-30 RCSB 
V56 "Modify subcomponent list" 2016-09-30 RCSB 
V56 "Initial release"          2017-01-11 RCSB 
V56 "Other modification"       2020-06-27 RCSB 
V56 "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            V56 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C12 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
