data_U76
# 
_chem_comp.id                                    U76 
_chem_comp.name                                  "(3,5-difluorophenyl)methyl {(3S)-1-[(2S)-1-({(2S,3R)-4-(cyclopropylamino)-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-6-oxopiperidin-3-yl}carbamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H41 F2 N5 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-08-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        621.673 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     U76 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8DZC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
U76 C13 C1  C 0 1 N N S N N N -17.591 0.327  10.501 -5.359 3.417  -0.751 C13 U76 1  
U76 C15 C2  C 0 1 N N N N N N -18.900 1.397  8.795  -4.200 5.454  -0.243 C15 U76 2  
U76 C17 C3  C 0 1 N N N N N N -16.662 0.892  9.781  -5.210 3.606  0.743  C17 U76 3  
U76 C21 C4  C 0 1 N N N N N N -18.539 -4.266 10.580 -6.318 -0.803 -0.589 C21 U76 4  
U76 C24 C5  C 0 1 N N N N N N -21.299 -5.013 8.712  -7.501 -2.315 2.649  C24 U76 5  
U76 C28 C6  C 0 1 N N N N N N -20.187 -1.138 16.035 -1.929 -2.409 -1.041 C28 U76 6  
U76 O01 O1  O 0 1 N N N N N N -18.100 1.874  13.723 -1.672 -1.806 1.584  O01 U76 7  
U76 C02 C7  C 0 1 N N N N N N -19.232 2.092  14.003 -0.542 -1.451 1.322  C02 U76 8  
U76 C03 C8  C 0 1 N N N N N N -19.915 3.477  13.686 0.504  -1.562 2.394  C03 U76 9  
U76 C04 C9  C 0 1 N N N N N N -21.368 3.429  13.698 1.709  -0.689 2.037  C04 U76 10 
U76 C05 C10 C 0 1 N N S N N N -21.932 2.814  14.911 2.110  -0.985 0.587  C05 U76 11 
U76 C06 C11 C 0 1 N N N N N N -21.577 1.373  15.021 1.002  -0.483 -0.339 C06 U76 12 
U76 N07 N1  N 0 1 N N N N N N -20.084 1.031  14.719 -0.294 -0.989 0.096  N07 U76 13 
U76 C08 C12 C 0 1 N N S N N N -19.465 -0.268 14.972 -1.394 -0.985 -0.872 C08 U76 14 
U76 C09 C13 C 0 1 N N N N N N -19.578 -0.974 13.589 -2.498 -0.089 -0.374 C09 U76 15 
U76 N10 N2  N 0 1 N N N N N N -18.334 -1.272 12.875 -3.618 0.070  -1.106 N10 U76 16 
U76 C11 C14 C 0 1 N N S N N N -18.335 -1.928 11.545 -4.644 1.024  -0.678 C11 U76 17 
U76 C12 C15 C 0 1 N N N N N N -17.255 -1.180 10.697 -4.336 2.402  -1.266 C12 U76 18 
U76 C14 C16 C 0 1 N N N N N N -19.020 0.420  9.642  -5.078 4.817  -1.343 C14 U76 19 
U76 N16 N3  N 0 1 N N N N N N -17.366 1.614  8.577  -4.563 4.756  1.001  N16 U76 20 
U76 O18 O2  O 0 1 N N N N N N -15.507 0.862  9.967  -5.617 2.834  1.585  O18 U76 21 
U76 C19 C17 C 0 1 N N R N N N -18.090 -3.445 11.800 -6.015 0.554  -1.169 C19 U76 22 
U76 O20 O3  O 0 1 N N N N N N -18.799 -3.869 12.939 -6.007 0.472  -2.596 O20 U76 23 
U76 N22 N4  N 0 1 N N N N N N -19.772 -5.059 10.732 -6.477 -0.948 0.741  N22 U76 24 
U76 C23 C18 C 0 1 N N N N N N -20.368 -5.845 9.625  -6.772 -2.267 1.304  C23 U76 25 
U76 C25 C19 C 0 1 N N N N N N -21.889 -6.056 9.664  -6.017 -2.680 2.570  C25 U76 26 
U76 O26 O4  O 0 1 N N N N N N -17.923 -4.193 9.567  -6.419 -1.766 -1.320 O26 U76 27 
U76 O27 O5  O 0 1 N N N N N N -20.639 -1.252 13.137 -2.378 0.490  0.685  O27 U76 28 
U76 C29 C20 C 0 1 N N N N N N -20.056 -0.552 17.463 -0.831 -3.301 -1.622 C29 U76 29 
U76 C30 C21 C 0 1 N N N N N N -18.581 -0.324 17.779 -1.312 -4.753 -1.643 C30 U76 30 
U76 C31 C22 C 0 1 N N N N N N -20.731 -1.497 18.496 -0.507 -2.850 -3.047 C31 U76 31 
U76 N32 N5  N 0 1 N N N N N N -21.455 3.551  16.128 3.364  -0.296 0.273  N32 U76 32 
U76 C33 C23 C 0 1 N N N N N N -21.897 4.955  16.437 4.544  -0.870 0.578  C33 U76 33 
U76 O34 O6  O 0 1 N N N N N N -21.152 5.744  17.387 5.696  -0.236 0.289  O34 U76 34 
U76 C35 C24 C 0 1 N N N N N N -21.548 7.122  17.569 6.929  -0.915 0.647  C35 U76 35 
U76 C36 C25 C 0 1 Y N N N N N -21.085 8.030  16.393 8.105  -0.061 0.250  C36 U76 36 
U76 C37 C26 C 0 1 Y N N N N N -21.713 9.258  16.173 8.623  0.859  1.143  C37 U76 37 
U76 C38 C27 C 0 1 Y N N N N N -21.313 10.078 15.111 9.705  1.644  0.780  C38 U76 38 
U76 F39 F1  F 0 1 N N N N N N -21.916 11.297 14.883 10.211 2.542  1.653  F39 U76 39 
U76 C40 C28 C 0 1 Y N N N N N -20.276 9.648  14.274 10.267 1.508  -0.478 C40 U76 40 
U76 C41 C29 C 0 1 Y N N N N N -19.627 8.417  14.500 9.747  0.587  -1.371 C41 U76 41 
U76 F42 F2  F 0 1 N N N N N N -18.603 7.963  13.693 10.295 0.453  -2.599 F42 U76 42 
U76 C43 C30 C 0 1 Y N N N N N -20.044 7.617  15.566 8.669  -0.201 -1.004 C43 U76 43 
U76 O44 O7  O 0 1 N N N N N N -22.864 5.421  15.893 4.568  -1.961 1.114  O44 U76 44 
U76 H1  H1  H 0 1 N N N N N N -17.744 0.804  11.480 -6.371 3.095  -0.996 H1  U76 45 
U76 H2  H2  H 0 1 N N N N N N -19.358 2.310  9.202  -3.144 5.302  -0.468 H2  U76 46 
U76 H3  H3  H 0 1 N N N N N N -19.385 1.136  7.843  -4.417 6.519  -0.158 H3  U76 47 
U76 H4  H4  H 0 1 N N N N N N -21.449 -3.941 8.909  -7.761 -1.364 3.114  H4  U76 48 
U76 H5  H5  H 0 1 N N N N N N -21.308 -5.191 7.627  -8.211 -3.126 2.808  H5  U76 49 
U76 H6  H6  H 0 1 N N N N N N -21.254 -1.201 15.775 -2.239 -2.798 -0.071 H6  U76 50 
U76 H7  H7  H 0 1 N N N N N N -19.747 -2.146 16.025 -2.784 -2.397 -1.718 H7  U76 51 
U76 H8  H8  H 0 1 N N N N N N -19.587 3.806  12.689 0.085  -1.231 3.344  H8  U76 52 
U76 H9  H9  H 0 1 N N N N N N -19.586 4.207  14.440 0.822  -2.601 2.483  H9  U76 53 
U76 H10 H10 H 0 1 N N N N N N -21.750 4.458  13.621 1.443  0.363  2.137  H10 U76 54 
U76 H11 H11 H 0 1 N N N N N N -21.703 2.848  12.826 2.541  -0.923 2.703  H11 U76 55 
U76 H12 H12 H 0 1 N N N N N N -23.028 2.897  14.868 2.238  -2.060 0.455  H12 U76 56 
U76 H13 H13 H 0 1 N N N N N N -22.204 0.813  14.312 0.989  0.607  -0.327 H13 U76 57 
U76 H14 H14 H 0 1 N N N N N N -21.800 1.045  16.047 1.196  -0.830 -1.354 H14 U76 58 
U76 H15 H15 H 0 1 N N N N N N -18.405 -0.154 15.244 -1.031 -0.617 -1.832 H15 U76 59 
U76 H16 H16 H 0 1 N N N N N N -17.461 -1.026 13.296 -3.746 -0.448 -1.917 H16 U76 60 
U76 H17 H17 H 0 1 N N N N N N -19.316 -1.800 11.064 -4.650 1.087  0.411  H17 U76 61 
U76 H18 H18 H 0 1 N N N N N N -17.189 -1.658 9.709  -4.390 2.353  -2.354 H18 U76 62 
U76 H19 H19 H 0 1 N N N N N N -16.285 -1.262 11.210 -3.335 2.711  -0.965 H19 U76 63 
U76 H20 H20 H 0 1 N N N N N N -19.858 0.616  10.327 -4.531 4.741  -2.283 H20 U76 64 
U76 H21 H21 H 0 1 N N N N N N -19.198 -0.523 9.105  -6.004 5.377  -1.476 H21 U76 65 
U76 H22 H22 H 0 1 N N N N N N -16.926 2.109  7.828  -4.361 5.083  1.892  H22 U76 66 
U76 H23 H23 H 0 1 N N N N N N -17.011 -3.599 11.945 -6.778 1.264  -0.850 H23 U76 67 
U76 H24 H24 H 0 1 N N N N N N -18.521 -3.361 13.693 -5.351 -0.143 -2.951 H24 U76 68 
U76 H25 H25 H 0 1 N N N N N N -20.227 -5.067 11.622 -6.397 -0.178 1.326  H25 U76 69 
U76 H26 H26 H 0 1 N N N N N N -19.759 -6.626 9.147  -7.003 -3.048 0.579  H26 U76 70 
U76 H27 H27 H 0 1 N N N N N N -22.465 -5.732 10.543 -5.301 -1.970 2.983  H27 U76 71 
U76 H28 H28 H 0 1 N N N N N N -22.325 -6.982 9.261  -5.752 -3.732 2.677  H28 U76 72 
U76 H29 H29 H 0 1 N N N N N N -20.576 0.417  17.489 0.064  -3.224 -1.004 H29 U76 73 
U76 H30 H30 H 0 1 N N N N N N -18.483 0.092  18.792 -0.500 -5.401 -1.974 H30 U76 74 
U76 H31 H31 H 0 1 N N N N N N -18.042 -1.281 17.722 -1.625 -5.047 -0.641 H31 U76 75 
U76 H32 H32 H 0 1 N N N N N N -18.155 0.381  17.050 -2.154 -4.847 -2.329 H32 U76 76 
U76 H33 H33 H 0 1 N N N N N N -20.631 -1.070 19.505 -0.165 -1.816 -3.032 H33 U76 77 
U76 H34 H34 H 0 1 N N N N N N -21.797 -1.608 18.249 0.275  -3.486 -3.461 H34 U76 78 
U76 H35 H35 H 0 1 N N N N N N -20.243 -2.482 18.465 -1.403 -2.927 -3.665 H35 U76 79 
U76 H36 H36 H 0 1 N N N N N N -20.823 3.094  16.754 3.344  0.575  -0.155 H36 U76 80 
U76 H37 H37 H 0 1 N N N N N N -21.103 7.498  18.502 6.951  -1.086 1.723  H37 U76 81 
U76 H38 H38 H 0 1 N N N N N N -22.645 7.168  17.641 6.982  -1.871 0.125  H38 U76 82 
U76 H39 H39 H 0 1 N N N N N N -22.512 9.577  16.826 8.184  0.965  2.124  H39 U76 83 
U76 H40 H40 H 0 1 N N N N N N -19.969 10.268 13.444 11.107 2.123  -0.764 H40 U76 84 
U76 H41 H41 H 0 1 N N N N N N -19.556 6.671  15.750 8.264  -0.920 -1.701 H41 U76 85 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
U76 N16 C15 SING N N 1  
U76 N16 C17 SING N N 2  
U76 C24 C23 SING N N 3  
U76 C24 C25 SING N N 4  
U76 C15 C14 SING N N 5  
U76 O26 C21 DOUB N N 6  
U76 C23 C25 SING N N 7  
U76 C23 N22 SING N N 8  
U76 C14 C13 SING N N 9  
U76 C17 O18 DOUB N N 10 
U76 C17 C13 SING N N 11 
U76 C13 C12 SING N N 12 
U76 C21 N22 SING N N 13 
U76 C21 C19 SING N N 14 
U76 C12 C11 SING N N 15 
U76 C11 C19 SING N N 16 
U76 C11 N10 SING N N 17 
U76 C19 O20 SING N N 18 
U76 N10 C09 SING N N 19 
U76 O27 C09 DOUB N N 20 
U76 C09 C08 SING N N 21 
U76 C03 C04 SING N N 22 
U76 C03 C02 SING N N 23 
U76 F42 C41 SING N N 24 
U76 C04 C05 SING N N 25 
U76 O01 C02 DOUB N N 26 
U76 C02 N07 SING N N 27 
U76 C40 C41 DOUB Y N 28 
U76 C40 C38 SING Y N 29 
U76 C41 C43 SING Y N 30 
U76 N07 C08 SING N N 31 
U76 N07 C06 SING N N 32 
U76 F39 C38 SING N N 33 
U76 C05 C06 SING N N 34 
U76 C05 N32 SING N N 35 
U76 C08 C28 SING N N 36 
U76 C38 C37 DOUB Y N 37 
U76 C43 C36 DOUB Y N 38 
U76 O44 C33 DOUB N N 39 
U76 C28 C29 SING N N 40 
U76 N32 C33 SING N N 41 
U76 C37 C36 SING Y N 42 
U76 C36 C35 SING N N 43 
U76 C33 O34 SING N N 44 
U76 O34 C35 SING N N 45 
U76 C29 C30 SING N N 46 
U76 C29 C31 SING N N 47 
U76 C13 H1  SING N N 48 
U76 C15 H2  SING N N 49 
U76 C15 H3  SING N N 50 
U76 C24 H4  SING N N 51 
U76 C24 H5  SING N N 52 
U76 C28 H6  SING N N 53 
U76 C28 H7  SING N N 54 
U76 C03 H8  SING N N 55 
U76 C03 H9  SING N N 56 
U76 C04 H10 SING N N 57 
U76 C04 H11 SING N N 58 
U76 C05 H12 SING N N 59 
U76 C06 H13 SING N N 60 
U76 C06 H14 SING N N 61 
U76 C08 H15 SING N N 62 
U76 N10 H16 SING N N 63 
U76 C11 H17 SING N N 64 
U76 C12 H18 SING N N 65 
U76 C12 H19 SING N N 66 
U76 C14 H20 SING N N 67 
U76 C14 H21 SING N N 68 
U76 N16 H22 SING N N 69 
U76 C19 H23 SING N N 70 
U76 O20 H24 SING N N 71 
U76 N22 H25 SING N N 72 
U76 C23 H26 SING N N 73 
U76 C25 H27 SING N N 74 
U76 C25 H28 SING N N 75 
U76 C29 H29 SING N N 76 
U76 C30 H30 SING N N 77 
U76 C30 H31 SING N N 78 
U76 C30 H32 SING N N 79 
U76 C31 H33 SING N N 80 
U76 C31 H34 SING N N 81 
U76 C31 H35 SING N N 82 
U76 N32 H36 SING N N 83 
U76 C35 H37 SING N N 84 
U76 C35 H38 SING N N 85 
U76 C37 H39 SING N N 86 
U76 C40 H40 SING N N 87 
U76 C43 H41 SING N N 88 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
U76 SMILES           ACDLabs              12.01 "O=C1NCCC1CC(NC(=O)C(CC(C)C)N1CC(CCC1=O)NC(=O)OCc1cc(F)cc(F)c1)C(O)C(=O)NC1CC1"                                                                                                                                                                                                   
U76 InChI            InChI                1.06  "InChI=1S/C30H41F2N5O7/c1-16(2)9-24(28(41)36-23(12-18-7-8-33-27(18)40)26(39)29(42)34-21-3-4-21)37-14-22(5-6-25(37)38)35-30(43)44-15-17-10-19(31)13-20(32)11-17/h10-11,13,16,18,21-24,26,39H,3-9,12,14-15H2,1-2H3,(H,33,40)(H,34,42)(H,35,43)(H,36,41)/t18-,22-,23-,24-,26+/m0/s1" 
U76 InChIKey         InChI                1.06  NMYLRAOUIBCXHJ-PPCGFTSFSA-N                                                                                                                                                                                                                                                       
U76 SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](N1C[C@H](CCC1=O)NC(=O)OCc2cc(F)cc(F)c2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)C(=O)NC4CC4"                                                                                                                                                                            
U76 SMILES           CACTVS               3.385 "CC(C)C[CH](N1C[CH](CCC1=O)NC(=O)OCc2cc(F)cc(F)c2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)C(=O)NC4CC4"                                                                                                                                                                                    
U76 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@H](C(=O)NC2CC2)O)N3C[C@H](CCC3=O)NC(=O)OCc4cc(cc(c4)F)F"                                                                                                                                                                            
U76 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(C(=O)NC2CC2)O)N3CC(CCC3=O)NC(=O)OCc4cc(cc(c4)F)F"                                                                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
U76 "SYSTEMATIC NAME" ACDLabs              12.01 "(3,5-difluorophenyl)methyl {(3S)-1-[(2S)-1-({(2S,3R)-4-(cyclopropylamino)-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-6-oxopiperidin-3-yl}carbamate"                                                                      
U76 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[3,5-bis(fluoranyl)phenyl]methyl ~{N}-[(3~{S})-1-[(2~{S})-1-[[(2~{S},3~{R})-4-(cyclopropylamino)-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-6-oxidanylidene-piperidin-3-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
U76 "Create component" 2022-08-08 RCSB 
U76 "Initial release"  2023-04-05 RCSB 
U76 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            U76 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
