data_U36
# 
_chem_comp.id                                    U36 
_chem_comp.name                                  "2'-O-METHYOXYETHYL-URIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C12 H19 N2 O10 P" 
_chem_comp.mon_nstd_parent_comp_id               U 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-05-12 
_chem_comp.pdbx_modified_date                    2013-02-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        382.260 
_chem_comp.one_letter_code                       U 
_chem_comp.three_letter_code                     U36 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        468D 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
U36 P      P      P 0 1 N N N 17.660 -10.221 8.719  5.103  -0.030 -0.123 P      U36 1  
U36 OP1    OP1    O 0 1 N N N 18.046 -11.630 8.532  5.733  -1.333 -0.433 OP1    U36 2  
U36 OP2    OP2    O 0 1 N N N 18.275 -9.413  9.809  5.991  0.749  0.970  OP2    U36 3  
U36 OP3    OP3    O 0 1 N Y N 16.073 -10.206 8.879  5.010  0.853  -1.467 OP3    U36 4  
U36 "O5'"  "O5'"  O 0 1 N N N 17.926 -9.415  7.380  3.623  -0.275 0.462  "O5'"  U36 5  
U36 "C5'"  "C5'"  C 0 1 N N N 17.301 -9.794  6.158  2.629  -1.033 -0.229 "C5'"  U36 6  
U36 "C4'"  "C4'"  C 0 1 N N R 17.386 -8.663  5.177  1.345  -1.068 0.603  "C4'"  U36 7  
U36 "O4'"  "O4'"  O 0 1 N N N 16.638 -7.533  5.674  0.780  0.251  0.685  "O4'"  U36 8  
U36 "C3'"  "C3'"  C 0 1 N N R 18.760 -8.074  4.968  0.301  -1.972 -0.082 "C3'"  U36 9  
U36 "O3'"  "O3'"  O 0 1 N N N 19.556 -8.889  4.124  -0.063 -3.055 0.777  "O3'"  U36 10 
U36 "C2'"  "C2'"  C 0 1 N N R 18.421 -6.721  4.359  -0.910 -1.038 -0.321 "C2'"  U36 11 
U36 "O2'"  "O2'"  O 0 1 N N N 18.065 -6.848  2.996  -2.138 -1.714 -0.040 "O2'"  U36 12 
U36 "C1'"  "C1'"  C 0 1 N N R 17.187 -6.340  5.159  -0.655 0.094  0.706  "C1'"  U36 13 
U36 N1     N1     N 0 1 N N N 17.536 -5.464  6.275  -1.316 1.332  0.284  N1     U36 14 
U36 C2     C2     C 0 1 N N N 17.696 -4.127  6.006  -2.255 1.888  1.071  C2     U36 15 
U36 O2     O2     O 0 1 N N N 17.547 -3.655  4.893  -2.545 1.356  2.125  O2     U36 16 
U36 N3     N3     N 0 1 N N N 18.052 -3.357  7.083  -2.878 3.024  0.707  N3     U36 17 
U36 C4     C4     C 0 1 N N N 18.259 -3.785  8.381  -2.567 3.626  -0.459 C4     U36 18 
U36 O4     O4     O 0 1 N N N 18.561 -2.960  9.243  -3.130 4.655  -0.788 O4     U36 19 
U36 C5     C5     C 0 1 N N N 18.071 -5.186  8.580  -1.581 3.052  -1.296 C5     U36 20 
U36 C6     C6     C 0 1 N N N 17.716 -5.960  7.538  -0.968 1.914  -0.904 C6     U36 21 
U36 "CA'"  "CA'"  C 0 1 N N N 17.572 -5.613  2.439  -2.717 -2.362 -1.174 "CA'"  U36 22 
U36 "CB'"  "CB'"  C 0 1 N N N 16.207 -5.692  1.751  -4.020 -3.049 -0.759 "CB'"  U36 23 
U36 "CD'"  "CD'"  C 0 1 N N N 14.065 -4.898  2.493  -6.231 -2.601 0.049  "CD'"  U36 24 
U36 "OC'"  "OC'"  O 0 1 N N N 15.041 -5.971  2.597  -4.973 -2.062 -0.360 "OC'"  U36 25 
U36 HOP2   HOP2   H 0 0 N N N 18.893 -9.949  10.291 6.897  0.930  0.685  HOP2   U36 26 
U36 HOP3   HOP3   H 0 0 N N N 15.740 -11.094 8.819  4.606  1.722  -1.338 HOP3   U36 27 
U36 "H5'1" "H5'1" H 0 0 N N N 17.811 -10.676 5.744  2.424  -0.570 -1.194 "H5'1" U36 28 
U36 "H5'2" "H5'2" H 0 0 N N N 16.245 -10.036 6.347  2.989  -2.050 -0.384 "H5'2" U36 29 
U36 "H4'"  "H4'"  H 0 1 N N N 16.980 -8.989  4.208  1.562  -1.441 1.604  "H4'"  U36 30 
U36 "H3'"  "H3'"  H 0 1 N N N 19.248 -7.924  5.942  0.687  -2.350 -1.029 "H3'"  U36 31 
U36 HA     HA     H 0 1 N N N 20.411 -8.491  4.014  0.673  -3.639 1.007  HA     U36 32 
U36 "H2'"  "H2'"  H 0 1 N N N 19.236 -6.000  4.520  -0.907 -0.649 -1.339 "H2'"  U36 33 
U36 "H1'"  "H1'"  H 0 1 N N N 16.468 -5.836  4.496  -0.994 -0.204 1.698  "H1'"  U36 34 
U36 H3     H3     H 0 1 N N N 18.175 -2.380  6.911  -3.553 3.412  1.286  H3     U36 35 
U36 H5     H5     H 0 1 N N N 18.212 -5.621  9.558  -1.319 3.520  -2.233 H5     U36 36 
U36 H6     H6     H 0 1 N N N 17.567 -7.017  7.705  -0.210 1.464  -1.528 H6     U36 37 
U36 "HA'1" "HA'1" H 0 0 N N N 17.496 -4.880  3.256  -2.927 -1.622 -1.947 "HA'1" U36 38 
U36 "HA'2" "HA'2" H 0 0 N N N 18.304 -5.261  1.697  -2.022 -3.106 -1.563 "HA'2" U36 39 
U36 "HB'1" "HB'1" H 0 0 N N N 16.031 -4.726  1.254  -4.416 -3.616 -1.602 "HB'1" U36 40 
U36 "HB'2" "HB'2" H 0 0 N N N 16.264 -6.488  0.994  -3.825 -3.724 0.074  "HB'2" U36 41 
U36 "HD'1" "HD'1" H 0 0 N N N 13.200 -5.125  3.133  -6.898 -1.788 0.337  "HD'1" U36 42 
U36 "HD'2" "HD'2" H 0 0 N N N 14.524 -3.953  2.818  -6.673 -3.158 -0.776 "HD'2" U36 43 
U36 "HD'3" "HD'3" H 0 0 N N N 13.733 -4.804  1.448  -6.082 -3.266 0.899  "HD'3" U36 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
U36 P     OP1    DOUB N N 1  
U36 P     OP2    SING N N 2  
U36 P     OP3    SING N N 3  
U36 P     "O5'"  SING N N 4  
U36 OP2   HOP2   SING N N 5  
U36 OP3   HOP3   SING N N 6  
U36 "O5'" "C5'"  SING N N 7  
U36 "C5'" "C4'"  SING N N 8  
U36 "C5'" "H5'1" SING N N 9  
U36 "C5'" "H5'2" SING N N 10 
U36 "C4'" "O4'"  SING N N 11 
U36 "C4'" "C3'"  SING N N 12 
U36 "C4'" "H4'"  SING N N 13 
U36 "O4'" "C1'"  SING N N 14 
U36 "C3'" "O3'"  SING N N 15 
U36 "C3'" "C2'"  SING N N 16 
U36 "C3'" "H3'"  SING N N 17 
U36 "O3'" HA     SING N N 18 
U36 "C2'" "O2'"  SING N N 19 
U36 "C2'" "C1'"  SING N N 20 
U36 "C2'" "H2'"  SING N N 21 
U36 "O2'" "CA'"  SING N N 22 
U36 "C1'" N1     SING N N 23 
U36 "C1'" "H1'"  SING N N 24 
U36 N1    C2     SING N N 25 
U36 N1    C6     SING N N 26 
U36 C2    O2     DOUB N N 27 
U36 C2    N3     SING N N 28 
U36 N3    C4     SING N N 29 
U36 N3    H3     SING N N 30 
U36 C4    O4     DOUB N N 31 
U36 C4    C5     SING N N 32 
U36 C5    C6     DOUB N N 33 
U36 C5    H5     SING N N 34 
U36 C6    H6     SING N N 35 
U36 "CA'" "CB'"  SING N N 36 
U36 "CA'" "HA'1" SING N N 37 
U36 "CA'" "HA'2" SING N N 38 
U36 "CB'" "OC'"  SING N N 39 
U36 "CB'" "HB'1" SING N N 40 
U36 "CB'" "HB'2" SING N N 41 
U36 "CD'" "OC'"  SING N N 42 
U36 "CD'" "HD'1" SING N N 43 
U36 "CD'" "HD'2" SING N N 44 
U36 "CD'" "HD'3" SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
U36 SMILES           ACDLabs              12.01 "O=P(O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(OCCOC)C2O"                                                                                                                           
U36 InChI            InChI                1.03  "InChI=1S/C12H19N2O10P/c1-21-4-5-22-10-9(16)7(6-23-25(18,19)20)24-11(10)14-3-2-8(15)13-12(14)17/h2-3,7,9-11,16H,4-6H2,1H3,(H,13,15,17)(H2,18,19,20)/t7-,9-,10-,11-/m1/s1" 
U36 InChIKey         InChI                1.03  LOGKNOMZHBMDQP-QCNRFFRDSA-N                                                                                                                                               
U36 SMILES_CANONICAL CACTVS               3.370 "COCCO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2C=CC(=O)NC2=O"                                                                                                         
U36 SMILES           CACTVS               3.370 "COCCO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=CC(=O)NC2=O"                                                                                                               
U36 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "COCCO[C@@H]1[C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)COP(=O)(O)O)O"                                                                                                           
U36 SMILES           "OpenEye OEToolkits" 1.7.6 "COCCOC1C(C(OC1N2C=CC(=O)NC2=O)COP(=O)(O)O)O"                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
U36 "SYSTEMATIC NAME" ACDLabs              12.01 
;2'-O-(2-methoxyethyl)uridine 5'-(dihydrogen phosphate)
;
U36 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3R,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-4-(2-methoxyethoxy)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
U36 "Create component"  1999-05-12 RCSB 
U36 "Modify descriptor" 2011-06-04 RCSB 
U36 "Modify atom id"    2013-02-19 RCSB 
# 
