data_TD6
# 
_chem_comp.id                                    TD6 
_chem_comp.name                                  "(4S)-4-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3lambda~5~-thiazol-2-yl}-4-hydroxybutanoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H25 N4 O10 P2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2013-02-08 
_chem_comp.pdbx_modified_date                    2013-11-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        527.403 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     TD6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3ZHS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
TD6 S1     S1     S 0 1 Y N N -8.289  16.262 41.433 0.989  0.792  -1.545 S1     TD6 1  
TD6 C2     C2     C 0 1 Y N N -9.153  15.275 40.464 2.383  0.564  -0.581 C2     TD6 2  
TD6 N3     N3     N 1 1 Y N N -9.540  14.020 41.165 2.179  -0.373 0.283  N3     TD6 3  
TD6 C4     C4     C 0 1 Y N N -9.125  14.099 42.492 0.997  -0.955 0.269  C4     TD6 4  
TD6 C5     C5     C 0 1 Y N N -8.422  15.279 42.774 0.157  -0.483 -0.658 C5     TD6 5  
TD6 C6     C6     C 0 1 N N N -7.955  15.687 44.145 -1.252 -0.958 -0.901 C6     TD6 6  
TD6 C7     C7     C 0 1 N N N -6.445  15.651 44.155 -2.221 -0.142 -0.042 C7     TD6 7  
TD6 O7     O7     O 0 1 N N N -5.893  15.823 45.489 -3.557 -0.592 -0.273 O7     TD6 8  
TD6 PA     PA     P 0 1 N N N -4.268  15.857 45.568 -4.837 0.045  0.467  PA     TD6 9  
TD6 PB     PB     P 0 1 N N N -3.983  18.690 44.514 -7.730 -0.169 -0.143 PB     TD6 10 
TD6 "N1'"  "N1'"  N 0 1 Y N N -8.946  9.417  41.004 4.596  -3.270 -1.151 "N1'"  TD6 11 
TD6 C11    C11    C 0 1 N N S -9.714  15.735 39.092 3.665  1.344  -0.720 C11    TD6 12 
TD6 C13    C13    C 0 1 N N N -11.625 17.303 39.901 4.809  3.495  -0.166 C13    TD6 13 
TD6 O1A    O1A    O 0 1 N N N -3.525  14.629 45.218 -4.860 1.508  0.240  O1A    TD6 14 
TD6 O1B    O1B    O 0 1 N N N -4.263  19.135 45.925 -8.654 -1.458 -0.417 O1B    TD6 15 
TD6 "C2'"  "C2'"  C 0 1 Y N N -7.860  9.422  40.225 5.663  -3.690 -0.501 "C2'"  TD6 16 
TD6 O2A    O2A    O 0 1 N N N -4.011  16.386 46.981 -4.747 -0.252 2.046  O2A    TD6 17 
TD6 O2B    O2B    O 0 1 N N N -5.267  18.769 43.696 -8.087 0.424  1.165  O2B    TD6 18 
TD6 "N3'"  "N3'"  N 0 1 Y N N -7.449  10.446 39.470 5.985  -3.216 0.686  "N3'"  TD6 19 
TD6 O3A    O3A    O 0 1 N N N -3.966  17.159 44.796 -6.182 -0.611 -0.127 O3A    TD6 20 
TD6 O3B    O3B    O 0 1 N N N -2.716  19.252 43.925 -7.966 0.918  -1.307 O3B    TD6 21 
TD6 "C4'"  "C4'"  C 0 1 Y N N -8.185  11.573 39.484 5.235  -2.289 1.273  "C4'"  TD6 22 
TD6 "N4'"  "N4'"  N 0 1 N N N -7.801  12.551 38.669 5.577  -1.793 2.520  "N4'"  TD6 23 
TD6 "C5'"  "C5'"  C 0 1 Y N N -9.352  11.677 40.303 4.097  -1.822 0.611  "C5'"  TD6 24 
TD6 "C6'"  "C6'"  C 0 1 Y N N -9.664  10.547 41.021 3.799  -2.348 -0.630 "C6'"  TD6 25 
TD6 "C7'"  "C7'"  C 0 1 N N N -10.218 12.900 40.482 3.216  -0.772 1.237  "C7'"  TD6 26 
TD6 OL1    OL1    O 0 1 N N N -9.516  14.781 38.046 4.013  1.445  -2.103 OL1    TD6 27 
TD6 OL2    OL2    O 0 1 N N N -10.061 19.022 39.291 5.664  5.718  0.484  OL2    TD6 28 
TD6 OL3    OL3    O 0 1 N N N -12.165 19.147 38.572 3.533  5.225  0.798  OL3    TD6 29 
TD6 CLB    CLB    C 0 1 N N N -11.212 16.028 39.166 3.475  2.746  -0.138 CLB    TD6 30 
TD6 CLC    CLC    C 0 1 N N N -11.195 18.572 39.226 4.621  4.876  0.407  CLC    TD6 31 
TD6 CM2    CM2    C 0 1 N N N -7.027  8.180  40.203 6.540  -4.740 -1.133 CM2    TD6 32 
TD6 CM4    CM4    C 0 1 N N N -9.547  13.094 43.520 0.622  -2.062 1.221  CM4    TD6 33 
TD6 H6     H6     H 0 1 N N N -8.305  16.705 44.371 -1.503 -0.828 -1.954 H6     TD6 34 
TD6 H6A    H6A    H 0 1 N N N -8.350  14.988 44.897 -1.331 -2.012 -0.636 H6A    TD6 35 
TD6 H7     H7     H 0 1 N N N -6.113  14.680 43.758 -1.970 -0.272 1.011  H7     TD6 36 
TD6 H7A    H7A    H 0 1 N N N -6.069  16.459 43.511 -2.142 0.912  -0.307 H7A    TD6 37 
TD6 H11    H11    H 0 1 N N N -9.203  16.671 38.824 4.462  0.832  -0.182 H11    TD6 38 
TD6 H13    H13    H 0 1 N N N -12.722 17.312 39.985 5.543  2.951  0.428  H13    TD6 39 
TD6 H13A   H13A   H 0 0 N N N -11.180 17.280 40.907 5.160  3.573  -1.195 H13A   TD6 40 
TD6 HO1B   HO1B   H 0 0 N N N -5.180  19.371 46.007 -9.601 -1.266 -0.440 HO1B   TD6 41 
TD6 HO2A   HO2A   H 0 0 N N N -3.391  15.819 47.424 -4.728 -1.192 2.270  HO2A   TD6 42 
TD6 HO3B   HO3B   H 0 0 N N N -2.897  19.606 43.062 -7.752 0.597  -2.194 HO3B   TD6 43 
TD6 "HN4'" "HN4'" H 0 0 N N N -6.989  12.263 38.161 6.416  -2.053 2.933  "HN4'" TD6 44 
TD6 HN4A   HN4A   H 0 0 N N N -8.539  12.759 38.027 4.978  -1.186 2.982  HN4A   TD6 45 
TD6 "H6'"  "H6'"  H 0 1 N N N -10.548 10.572 41.641 2.927  -2.011 -1.171 "H6'"  TD6 46 
TD6 "H7'"  "H7'"  H 0 1 N N N -11.100 12.616 41.075 3.819  0.097  1.503  "H7'"  TD6 47 
TD6 "H7'A" "H7'A" H 0 0 N N N -10.540 13.245 39.488 2.748  -1.177 2.134  "H7'A" TD6 48 
TD6 HOL1   HOL1   H 0 0 N N N -9.879  15.119 37.236 3.347  1.891  -2.644 HOL1   TD6 49 
TD6 HOL2   HOL2   H 0 0 N N N -10.013 19.834 38.800 5.495  6.593  0.859  HOL2   TD6 50 
TD6 HLB    HLB    H 0 1 N N N -11.589 16.100 38.135 2.740  3.290  -0.733 HLB    TD6 51 
TD6 HLBA   HLBA   H 0 0 N N N -11.693 15.179 39.674 3.124  2.668  0.891  HLBA   TD6 52 
TD6 HM2    HM2    H 0 1 N N N -7.473  7.427  40.870 7.312  -4.257 -1.732 HM2    TD6 53 
TD6 HM2A   HM2A   H 0 0 N N N -6.987  7.784  39.178 7.008  -5.341 -0.353 HM2A   TD6 54 
TD6 HM2B   HM2B   H 0 0 N N N -6.009  8.416  40.545 5.934  -5.383 -1.772 HM2B   TD6 55 
TD6 HM4    HM4    H 0 1 N N N -8.786  12.303 43.594 0.189  -1.633 2.124  HM4    TD6 56 
TD6 HM4A   HM4A   H 0 0 N N N -9.655  13.591 44.495 -0.106 -2.719 0.745  HM4A   TD6 57 
TD6 HM4B   HM4B   H 0 0 N N N -10.510 12.650 43.225 1.513  -2.634 1.481  HM4B   TD6 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
TD6 C2    S1     SING Y N 1  
TD6 S1    C5     SING Y N 2  
TD6 C11   C2     SING N N 3  
TD6 C2    N3     DOUB Y N 4  
TD6 "C7'" N3     SING N N 5  
TD6 N3    C4     SING Y N 6  
TD6 C4    C5     DOUB Y N 7  
TD6 C4    CM4    SING N N 8  
TD6 C5    C6     SING N N 9  
TD6 C6    C7     SING N N 10 
TD6 C6    H6     SING N N 11 
TD6 C6    H6A    SING N N 12 
TD6 C7    O7     SING N N 13 
TD6 C7    H7     SING N N 14 
TD6 C7    H7A    SING N N 15 
TD6 O7    PA     SING N N 16 
TD6 O3A   PA     SING N N 17 
TD6 O1A   PA     DOUB N N 18 
TD6 PA    O2A    SING N N 19 
TD6 O2B   PB     DOUB N N 20 
TD6 O3B   PB     SING N N 21 
TD6 PB    O3A    SING N N 22 
TD6 PB    O1B    SING N N 23 
TD6 "C2'" "N1'"  DOUB Y N 24 
TD6 "N1'" "C6'"  SING Y N 25 
TD6 OL1   C11    SING N N 26 
TD6 C11   CLB    SING N N 27 
TD6 C11   H11    SING N N 28 
TD6 CLB   C13    SING N N 29 
TD6 CLC   C13    SING N N 30 
TD6 C13   H13    SING N N 31 
TD6 C13   H13A   SING N N 32 
TD6 O1B   HO1B   SING N N 33 
TD6 "N3'" "C2'"  SING Y N 34 
TD6 CM2   "C2'"  SING N N 35 
TD6 O2A   HO2A   SING N N 36 
TD6 "N3'" "C4'"  DOUB Y N 37 
TD6 O3B   HO3B   SING N N 38 
TD6 "N4'" "C4'"  SING N N 39 
TD6 "C4'" "C5'"  SING Y N 40 
TD6 "N4'" "HN4'" SING N N 41 
TD6 "N4'" HN4A   SING N N 42 
TD6 "C5'" "C7'"  SING N N 43 
TD6 "C5'" "C6'"  DOUB Y N 44 
TD6 "C6'" "H6'"  SING N N 45 
TD6 "C7'" "H7'"  SING N N 46 
TD6 "C7'" "H7'A" SING N N 47 
TD6 OL1   HOL1   SING N N 48 
TD6 CLC   OL2    SING N N 49 
TD6 OL2   HOL2   SING N N 50 
TD6 OL3   CLC    DOUB N N 51 
TD6 CLB   HLB    SING N N 52 
TD6 CLB   HLBA   SING N N 53 
TD6 CM2   HM2    SING N N 54 
TD6 CM2   HM2A   SING N N 55 
TD6 CM2   HM2B   SING N N 56 
TD6 CM4   HM4    SING N N 57 
TD6 CM4   HM4A   SING N N 58 
TD6 CM4   HM4B   SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
TD6 SMILES           ACDLabs              12.01 "O=C(O)CCC(O)c1sc(c(n1Cc2cnc(nc2N)C)C)CCOP(=O)(O)OP(=O)(O)O"                                                                                                                                                 
TD6 InChI            InChI                1.03  "InChI=1S/C16H26N4O10P2S/c1-9-13(5-6-29-32(27,28)30-31(24,25)26)33-16(12(21)3-4-14(22)23)20(9)8-11-7-18-10(2)19-15(11)17/h7,12,20-21H,3-6,8H2,1-2H3,(H,22,23)(H,27,28)(H2,17,18,19)(H2,24,25,26)/t12-/m0/s1" 
TD6 InChIKey         InChI                1.03  RWCNVMPVYGBSHH-LBPRGKRZSA-N                                                                                                                                                                                  
TD6 SMILES_CANONICAL CACTVS               3.370 "Cc1ncc(C[n+]2c(C)c(CCO[P](O)(=O)O[P](O)(O)=O)sc2[C@@H](O)CCC(O)=O)c(N)n1"                                                                                                                                   
TD6 SMILES           CACTVS               3.370 "Cc1ncc(C[n+]2c(C)c(CCO[P](O)(=O)O[P](O)(O)=O)sc2[CH](O)CCC(O)=O)c(N)n1"                                                                                                                                     
TD6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1c(sc([n+]1Cc2cnc(nc2N)C)[C@H](CCC(=O)O)O)CCOP(=O)(O)OP(=O)(O)O"                                                                                                                                          
TD6 SMILES           "OpenEye OEToolkits" 1.7.6 "Cc1c(sc([n+]1Cc2cnc(nc2N)C)C(CCC(=O)O)O)CCOP(=O)(O)OP(=O)(O)O"                                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
TD6 "SYSTEMATIC NAME" ACDLabs              12.01 "(4S)-4-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3lambda~5~-thiazol-2-yl}-4-hydroxybutanoic acid" 
TD6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(4S)-4-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-5-[2-[oxidanyl(phosphonooxy)phosphoryl]oxyethyl]-1,3-thiazol-3-ium-2-yl]-4-oxidanyl-butanoic acid"     
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
TD6 "Create component" 2013-02-08 EBI  
TD6 "Initial release"  2013-11-13 RCSB 
# 
