data_OG6
# 
_chem_comp.id                                    OG6 
_chem_comp.name                                  "6-[bis(oxidanyl)methyl]-5~{H}-pyrimidine-2,4-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C5 H6 N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "6-Formyl-uracil hydrate" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-01 
_chem_comp.pdbx_modified_date                    2023-07-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        158.112 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     OG6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8I6C 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OG6 O2  O1 O 0 1 N N N 0.507  17.738 -7.841  2.704  -0.002 1.174  O2  OG6 1  
OG6 C10 C1 C 0 1 N N N 0.358  16.532 -7.934  2.114  0.579  0.010  C10 OG6 2  
OG6 C06 C2 C 0 1 N N N 0.022  16.035 -9.278  0.633  0.299  0.004  C06 OG6 3  
OG6 C07 C3 C 0 1 N N N 0.464  14.768 -9.674  -0.250 1.320  0.009  C07 OG6 4  
OG6 C09 C4 C 0 1 N N N 0.255  14.345 -10.976 -1.636 1.032  0.003  C09 OG6 5  
OG6 O02 O2 O 0 1 N N N 0.657  13.208 -11.332 -2.452 1.936  0.007  O02 OG6 6  
OG6 N05 N1 N 0 1 N N N -0.367 15.181 -11.826 -2.045 -0.253 -0.006 N05 OG6 7  
OG6 C08 C5 C 0 1 N N N -0.771 16.418 -11.415 -1.142 -1.252 -0.011 C08 OG6 8  
OG6 O01 O3 O 0 1 N N N -1.343 17.195 -12.205 -1.525 -2.406 -0.020 O01 OG6 9  
OG6 N04 N2 N 0 1 N N N -0.567 16.855 -10.177 0.178  -0.991 -0.011 N04 OG6 10 
OG6 H1  H1 H 0 1 N N N 1.430  16.407 -8.148  2.280  1.656  0.018  H1  OG6 11 
OG6 H2  H2 H 0 1 N N N 0.966  14.123 -8.968  0.096  2.343  0.017  H2  OG6 12 
OG6 H4  H4 H 0 1 N N N -0.535 14.893 -12.769 -2.992 -0.459 -0.006 H4  OG6 13 
OG6 O1  O4 O 0 1 N N N ?      ?      ?       2.711  0.014  -1.159 O1  OG6 14 
OG6 H5  H5 H 0 1 N N N 0.720  17.963 -6.943  2.595  -0.961 1.234  H5  OG6 15 
OG6 H6  H6 H 0 1 N N N ?      ?      ?       3.665  0.155  -1.222 H6  OG6 16 
OG6 H3  H3 H 0 1 N N N -0.846 17.779 -9.914  0.812  -1.725 -0.015 H3  OG6 17 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OG6 O01 C08 DOUB N N 1  
OG6 N05 C08 SING N N 2  
OG6 N05 C09 SING N N 3  
OG6 C08 N04 SING N N 4  
OG6 O02 C09 DOUB N N 5  
OG6 C09 C07 SING N N 6  
OG6 N04 C06 SING N N 7  
OG6 C07 C06 DOUB N N 8  
OG6 C06 C10 SING N N 9  
OG6 C10 O2  SING N N 10 
OG6 C10 H1  SING N N 11 
OG6 C07 H2  SING N N 12 
OG6 N05 H4  SING N N 13 
OG6 C10 O1  SING N N 14 
OG6 O2  H5  SING N N 15 
OG6 O1  H6  SING N N 16 
OG6 N04 H3  SING N N 17 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OG6 InChI            InChI                1.06  "InChI=1S/C5H6N2O4/c8-3-1-2(4(9)10)6-5(11)7-3/h1,4,9-10H,(H2,6,7,8,11)" 
OG6 InChIKey         InChI                1.06  DUGHQFVNXIWPEA-UHFFFAOYSA-N                                             
OG6 SMILES_CANONICAL CACTVS               3.385 "OC(O)C1=CC(=O)NC(=O)N1"                                                
OG6 SMILES           CACTVS               3.385 "OC(O)C1=CC(=O)NC(=O)N1"                                                
OG6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=C(NC(=O)NC1=O)C(O)O"                                                
OG6 SMILES           "OpenEye OEToolkits" 2.0.7 "C1=C(NC(=O)NC1=O)C(O)O"                                                
# 
_pdbx_chem_comp_identifier.comp_id           OG6 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "6-[bis(oxidanyl)methyl]-1~{H}-pyrimidine-2,4-dione" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      OG6 
_pdbx_chem_comp_synonyms.name         "6-Formyl-uracil hydrate" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OG6 "Create component" 2023-02-01 PDBJ 
OG6 "Initial release"  2023-07-12 RCSB 
# 
