data_O06
# 
_chem_comp.id                                    O06 
_chem_comp.name                                  "~{N}-[3-methyl-2-(3-methyl-3-oxidanyl-butyl)-6-(2-oxidanylpropan-2-yl)benzimidazol-5-yl]-6-(trifluoromethyl)pyridine-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H27 F3 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-08-25 
_chem_comp.pdbx_modified_date                    2023-09-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        464.481 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     O06 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8ATN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
O06 C4  C1  C 0 1 Y N N 21.110 39.301 6.510  -2.124 0.055  -0.397 C4  O06 1  
O06 C14 C2  C 0 1 N N N 20.230 39.289 4.051  -3.443 2.178  -0.847 C14 O06 2  
O06 C5  C3  C 0 1 Y N N 20.504 39.224 7.743  -2.480 -1.296 -0.245 C5  O06 3  
O06 C6  C4  C 0 1 Y N N 21.287 39.293 8.891  -1.488 -2.248 0.005  C6  O06 4  
O06 C7  C5  C 0 1 Y N N 22.681 39.391 8.835  -0.182 -1.862 0.101  C7  O06 5  
O06 C8  C6  C 0 1 N N N 23.482 39.445 10.159 0.883  -2.894 0.371  C8  O06 6  
O06 C10 C7  C 0 1 N N N 22.591 39.225 11.394 1.557  -2.592 1.711  C10 O06 7  
O06 C12 C8  C 0 1 Y N N 18.979 39.137 6.272  -4.309 -0.180 -0.616 C12 O06 8  
O06 N1  N1  N 0 1 N N N 24.681 39.535 7.524  1.519  -0.146 0.052  N1  O06 9  
O06 C3  C9  C 0 1 Y N N 22.503 39.420 6.427  -0.793 0.435  -0.297 C3  O06 10 
O06 F28 F1  F 0 1 N N N 29.013 41.573 10.015 5.887  -1.224 -0.664 F28 O06 11 
O06 C27 C10 C 0 1 N N N 29.075 40.265 9.827  6.520  -0.025 -0.319 C27 O06 12 
O06 F29 F2  F 0 1 N N N 28.183 39.699 10.599 7.337  -0.234 0.798  F29 O06 13 
O06 F30 F3  F 0 1 N N N 30.271 39.788 10.145 7.301  0.416  -1.392 F30 O06 14 
O06 C23 C11 C 0 1 Y N N 28.670 39.811 8.434  5.480  1.016  0.007  C23 O06 15 
O06 N22 N2  N 0 1 Y N N 27.378 39.891 8.075  4.209  0.677  0.032  N22 O06 16 
O06 C24 C12 C 0 1 Y N N 29.612 39.257 7.587  5.876  2.315  0.282  C24 O06 17 
O06 C25 C13 C 0 1 Y N N 29.199 38.828 6.329  4.916  3.269  0.581  C25 O06 18 
O06 C26 C14 C 0 1 Y N N 27.858 38.947 5.962  3.584  2.886  0.594  C26 O06 19 
O06 C21 C15 C 0 1 Y N N 26.961 39.491 6.863  3.259  1.560  0.313  C21 O06 20 
O06 C20 C16 C 0 1 N N N 25.510 39.604 6.461  1.840  1.135  0.323  C20 O06 21 
O06 O31 O1  O 0 1 N N N 25.225 39.827 5.275  0.966  1.940  0.575  O31 O06 22 
O06 C2  C17 C 0 1 Y N N 23.321 39.472 7.575  0.176  -0.524 -0.050 C2  O06 23 
O06 C33 C18 C 0 1 N N N 24.100 40.807 10.225 0.246  -4.284 0.423  C33 O06 24 
O06 O9  O2  O 0 1 N N N 24.535 38.466 10.138 1.859  -2.856 -0.672 O9  O06 25 
O06 N11 N3  N 0 1 Y N N 19.193 39.127 7.562  -3.829 -1.368 -0.391 N11 O06 26 
O06 N13 N4  N 0 1 Y N N 20.121 39.241 5.626  -3.303 0.737  -0.626 N13 O06 27 
O06 C15 C19 C 0 1 N N N 17.643 39.052 5.637  -5.767 0.136  -0.829 C15 O06 28 
O06 C16 C20 C 0 1 N N N 17.276 37.601 5.672  -6.424 0.446  0.517  C16 O06 29 
O06 C17 C21 C 0 1 N N N 16.189 37.292 4.649  -7.904 0.767  0.301  C17 O06 30 
O06 C19 C22 C 0 1 N N N 16.334 38.083 3.340  -8.532 1.198  1.628  C19 O06 31 
O06 C32 C23 C 0 1 N N N 16.216 35.790 4.397  -8.036 1.901  -0.718 C32 O06 32 
O06 O18 O3  O 0 1 N N N 14.935 37.628 5.275  -8.577 -0.394 -0.189 O18 O06 33 
O06 H1  H1  H 0 1 N N N 21.287 39.378 3.759  -3.599 2.679  0.109  H1  O06 34 
O06 H2  H2  H 0 1 N N N 19.808 38.366 3.626  -2.538 2.563  -1.316 H2  O06 35 
O06 H3  H3  H 0 1 N N N 19.671 40.157 3.671  -4.297 2.364  -1.498 H3  O06 36 
O06 H4  H4  H 0 1 N N N 20.803 39.270 9.856  -1.754 -3.288 0.123  H4  O06 37 
O06 H5  H5  H 0 1 N N N 23.207 39.273 12.304 0.828  -2.691 2.515  H5  O06 38 
O06 H6  H6  H 0 1 N N N 21.818 40.007 11.433 2.375  -3.295 1.873  H6  O06 39 
O06 H7  H7  H 0 1 N N N 22.110 38.238 11.328 1.950  -1.575 1.699  H7  O06 40 
O06 H8  H8  H 0 1 N N N 25.137 39.529 8.414  2.219  -0.806 -0.072 H8  O06 41 
O06 H9  H9  H 0 1 N N N 22.966 39.474 5.453  -0.515 1.471  -0.414 H9  O06 42 
O06 H10 H10 H 0 1 N N N 30.643 39.160 7.894  6.923  2.581  0.264  H10 O06 43 
O06 H11 H11 H 0 1 N N N 29.914 38.404 5.639  5.200  4.288  0.799  H11 O06 44 
O06 H12 H12 H 0 1 N N N 27.525 38.619 4.988  2.810  3.603  0.823  H12 O06 45 
O06 H13 H13 H 0 1 N N N 24.685 40.900 11.152 -0.202 -4.514 -0.544 H13 O06 46 
O06 H14 H14 H 0 1 N N N 24.762 40.952 9.358  1.010  -5.025 0.656  H14 O06 47 
O06 H15 H15 H 0 1 N N N 23.308 41.570 10.213 -0.525 -4.301 1.193  H15 O06 48 
O06 H16 H16 H 0 1 N N N 25.021 38.506 10.953 1.501  -3.038 -1.552 H16 O06 49 
O06 H17 H17 H 0 1 N N N 17.687 39.413 4.599  -5.859 1.001  -1.486 H17 O06 50 
O06 H18 H18 H 0 1 N N N 16.910 39.648 6.201  -6.261 -0.721 -1.286 H18 O06 51 
O06 H19 H19 H 0 1 N N N 16.908 37.346 6.677  -6.332 -0.419 1.174  H19 O06 52 
O06 H20 H20 H 0 1 N N N 18.167 36.998 5.444  -5.929 1.304  0.974  H20 O06 53 
O06 H21 H21 H 0 1 N N N 16.311 39.161 3.558  -8.438 0.391  2.354  H21 O06 54 
O06 H22 H22 H 0 1 N N N 17.290 37.827 2.861  -8.019 2.085  2.001  H22 O06 55 
O06 H23 H23 H 0 1 N N N 15.505 37.828 2.664  -9.586 1.427  1.473  H23 O06 56 
O06 H24 H24 H 0 1 N N N 16.110 35.255 5.353  -9.091 2.130  -0.873 H24 O06 57 
O06 H25 H25 H 0 1 N N N 15.386 35.515 3.729  -7.523 2.787  -0.344 H25 O06 58 
O06 H26 H26 H 0 1 N N N 17.171 35.514 3.927  -7.589 1.594  -1.663 H26 O06 59 
O06 H27 H27 H 0 1 N N N 14.844 37.140 6.085  -8.534 -1.155 0.407  H27 O06 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
O06 C19 C17 SING N N 1  
O06 C14 N13 SING N N 2  
O06 C32 C17 SING N N 3  
O06 C17 O18 SING N N 4  
O06 C17 C16 SING N N 5  
O06 O31 C20 DOUB N N 6  
O06 N13 C12 SING Y N 7  
O06 N13 C4  SING Y N 8  
O06 C15 C16 SING N N 9  
O06 C15 C12 SING N N 10 
O06 C26 C25 DOUB Y N 11 
O06 C26 C21 SING Y N 12 
O06 C12 N11 DOUB Y N 13 
O06 C25 C24 SING Y N 14 
O06 C3  C4  DOUB Y N 15 
O06 C3  C2  SING Y N 16 
O06 C20 C21 SING N N 17 
O06 C20 N1  SING N N 18 
O06 C4  C5  SING Y N 19 
O06 C21 N22 DOUB Y N 20 
O06 N1  C2  SING N N 21 
O06 N11 C5  SING Y N 22 
O06 C2  C7  DOUB Y N 23 
O06 C24 C23 DOUB Y N 24 
O06 C5  C6  DOUB Y N 25 
O06 N22 C23 SING Y N 26 
O06 C23 C27 SING N N 27 
O06 C7  C6  SING Y N 28 
O06 C7  C8  SING N N 29 
O06 C27 F28 SING N N 30 
O06 C27 F30 SING N N 31 
O06 C27 F29 SING N N 32 
O06 O9  C8  SING N N 33 
O06 C8  C33 SING N N 34 
O06 C8  C10 SING N N 35 
O06 C14 H1  SING N N 36 
O06 C14 H2  SING N N 37 
O06 C14 H3  SING N N 38 
O06 C6  H4  SING N N 39 
O06 C10 H5  SING N N 40 
O06 C10 H6  SING N N 41 
O06 C10 H7  SING N N 42 
O06 N1  H8  SING N N 43 
O06 C3  H9  SING N N 44 
O06 C24 H10 SING N N 45 
O06 C25 H11 SING N N 46 
O06 C26 H12 SING N N 47 
O06 C33 H13 SING N N 48 
O06 C33 H14 SING N N 49 
O06 C33 H15 SING N N 50 
O06 O9  H16 SING N N 51 
O06 C15 H17 SING N N 52 
O06 C15 H18 SING N N 53 
O06 C16 H19 SING N N 54 
O06 C16 H20 SING N N 55 
O06 C19 H21 SING N N 56 
O06 C19 H22 SING N N 57 
O06 C19 H23 SING N N 58 
O06 C32 H24 SING N N 59 
O06 C32 H25 SING N N 60 
O06 C32 H26 SING N N 61 
O06 O18 H27 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
O06 InChI            InChI                1.06    "InChI=1S/C23H27F3N4O3/c1-21(2,32)10-9-19-28-16-11-13(22(3,4)33)15(12-17(16)30(19)5)29-20(31)14-7-6-8-18(27-14)23(24,25)26/h6-8,11-12,32-33H,9-10H2,1-5H3,(H,29,31)" 
O06 InChIKey         InChI                1.06    HRMRCQCPDQTKCV-UHFFFAOYSA-N                                                                                                                                          
O06 SMILES_CANONICAL CACTVS               3.385   "Cn1c(CCC(C)(C)O)nc2cc(c(NC(=O)c3cccc(n3)C(F)(F)F)cc12)C(C)(C)O"                                                                                                     
O06 SMILES           CACTVS               3.385   "Cn1c(CCC(C)(C)O)nc2cc(c(NC(=O)c3cccc(n3)C(F)(F)F)cc12)C(C)(C)O"                                                                                                     
O06 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C)(CCc1nc2cc(c(cc2n1C)NC(=O)c3cccc(n3)C(F)(F)F)C(C)(C)O)O"                                                                                                       
O06 SMILES           "OpenEye OEToolkits" 3.1.0.0 "CC(C)(CCc1nc2cc(c(cc2n1C)NC(=O)c3cccc(n3)C(F)(F)F)C(C)(C)O)O"                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           O06 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "~{N}-[3-methyl-2-(3-methyl-3-oxidanyl-butyl)-6-(2-oxidanylpropan-2-yl)benzimidazol-5-yl]-6-(trifluoromethyl)pyridine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
O06 "Create component" 2022-08-25 PDBE 
O06 "Initial release"  2023-09-06 RCSB 
# 
