data_NK6
# 
_chem_comp.id                                    NK6 
_chem_comp.name                                  "N-[[1-[4-azanyl-1-[(4-chlorophenyl)amino]cyclohexyl]carbonylpiperidin-4-yl]methyl]-2-chloranyl-ethanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H30 Cl2 N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-08-17 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        441.395 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     NK6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8ARR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
NK6 C1  C1  C  0 1 N N N N N N 13.975 16.660 -0.221 -5.516 1.953  -0.555 C1  NK6 1  
NK6 C2  C2  C  0 1 N N N N N N 14.659 17.227 -1.449 -4.203 2.725  -0.696 C2  NK6 2  
NK6 C3  C3  C  0 1 N N N N N N 16.013 17.834 -1.082 -3.205 1.893  -1.504 C3  NK6 3  
NK6 C4  C4  C  0 1 N N N N N N 15.913 18.920 0.017  -2.943 0.569  -0.783 C4  NK6 4  
NK6 C5  C5  C  0 1 Y N N N N N 17.692 20.116 1.381  -1.508 -1.435 -1.043 C5  NK6 5  
NK6 C6  C6  C  0 1 Y N N N N N 16.872 21.175 1.818  -0.583 -2.180 -1.764 C6  NK6 6  
NK6 C7  C7  C  0 1 Y N N N N N 17.379 22.144 2.665  -0.105 -3.369 -1.251 C7  NK6 7  
NK6 C8  C8  C  0 1 Y N N N N N 18.695 22.067 3.070  -0.547 -3.820 -0.020 C8  NK6 8  
NK6 C9  C9  C  0 1 Y N N N N N 19.518 21.037 2.663  -1.468 -3.081 0.701  C9  NK6 9  
NK6 C10 C10 C  0 1 Y N N N N N 19.014 20.059 1.838  -1.949 -1.890 0.193  C10 NK6 10 
NK6 C11 C11 C  0 1 N N N N N N 15.356 20.228 -0.565 -2.374 0.846  0.585  C11 NK6 11 
NK6 C12 C12 C  0 1 N N N N N N 15.456 22.190 -2.055 -0.624 1.763  2.030  C12 NK6 12 
NK6 C13 C13 C  0 1 N N N N N N 16.305 23.392 -1.702 0.760  1.125  2.185  C13 NK6 13 
NK6 C14 C14 C  0 1 N N N N N N 17.755 23.211 -2.143 1.649  1.554  1.016  C14 NK6 14 
NK6 C15 C15 C  0 1 N N N N N N 18.576 24.377 -1.616 3.043  0.947  1.185  C15 NK6 15 
NK6 C16 C16 C  0 1 N N N N N N 20.707 25.255 -2.405 5.213  1.051  0.082  C16 NK6 16 
NK6 C17 C17 C  0 1 N N N N N N 21.577 25.939 -3.442 6.122  1.571  -1.002 C17 NK6 17 
NK6 C18 C18 C  0 1 N N N N N N 18.301 21.871 -1.659 1.036  1.066  -0.299 C18 NK6 18 
NK6 C19 C19 C  0 1 N N N N N N 17.377 20.724 -2.012 -0.345 1.704  -0.482 C19 NK6 19 
NK6 C20 C20 C  0 1 N N N N N N 15.076 18.410 1.217  -4.256 -0.203 -0.642 C20 NK6 20 
NK6 C21 C21 C  0 1 N N N N N N 13.755 17.746 0.818  -5.254 0.629  0.166  C21 NK6 21 
NK6 N1  N1  N  0 1 N N N N N N 12.682 16.054 -0.607 -6.473 2.752  0.221  N1  NK6 22 
NK6 N2  N2  N  0 1 N N N N N N 17.279 19.104 0.523  -1.988 -0.228 -1.557 N2  NK6 23 
NK6 CL1 CL1 CL 0 0 N N N N N N 19.338 23.260 4.157  0.055  -5.317 0.622  CL1 NK6 24 
NK6 O1  O1  O  0 1 N N N N N N 14.248 20.632 -0.219 -3.010 0.556  1.576  O1  NK6 25 
NK6 N3  N3  N  0 1 N N N N N N 16.034 20.974 -1.463 -1.160 1.417  0.706  N3  NK6 26 
NK6 N4  N4  N  0 1 N N N N N N 19.422 24.996 -2.632 3.927  1.452  0.132  N4  NK6 27 
NK6 O2  O2  O  0 1 N N N N N N 21.235 24.952 -1.345 5.637  0.271  0.908  O2  NK6 28 
NK6 H1  H1  H  0 1 N N N N N N 14.621 15.884 0.214  -5.927 1.752  -1.544 H1  NK6 29 
NK6 H2  H2  H  0 1 N N N N N N 14.021 18.007 -1.890 -4.389 3.668  -1.210 H2  NK6 30 
NK6 H3  H3  H  0 1 N N N N N N 14.811 16.421 -2.182 -3.791 2.926  0.293  H3  NK6 31 
NK6 H4  H4  H  0 1 N N N N N N 16.671 17.030 -0.721 -3.617 1.692  -2.493 H4  NK6 32 
NK6 H5  H5  H  0 1 N N N N N N 16.449 18.288 -1.984 -2.270 2.443  -1.604 H5  NK6 33 
NK6 H6  H6  H  0 1 N N N N N N 15.844 21.230 1.491  -0.238 -1.828 -2.725 H6  NK6 34 
NK6 H7  H7  H  0 1 N N N N N N 16.750 22.953 3.006  0.613  -3.949 -1.812 H7  NK6 35 
NK6 H8  H8  H  0 1 N N N N N N 20.547 20.999 2.989  -1.812 -3.436 1.662  H8  NK6 36 
NK6 H9  H9  H  0 1 N N N N N N 19.646 19.236 1.539  -2.668 -1.313 0.756  H9  NK6 37 
NK6 H10 H10 H  0 1 N N N N N N 14.438 22.336 -1.665 -1.291 1.384  2.805  H10 NK6 38 
NK6 H11 H11 H  0 1 N N N N N N 15.418 22.080 -3.149 -0.539 2.847  2.118  H11 NK6 39 
NK6 H12 H12 H  0 1 N N N N N N 16.280 23.538 -0.612 1.209  1.453  3.123  H12 NK6 40 
NK6 H13 H13 H  0 1 N N N N N N 15.889 24.280 -2.200 0.661  0.040  2.189  H13 NK6 41 
NK6 H14 H14 H  0 1 N N N N N N 17.790 23.226 -3.242 1.726  2.642  0.998  H14 NK6 42 
NK6 H15 H15 H  0 1 N N N N N N 19.219 24.011 -0.802 3.443  1.223  2.160  H15 NK6 43 
NK6 H16 H16 H  0 1 N N N N N N 17.887 25.140 -1.224 2.977  -0.139 1.114  H16 NK6 44 
NK6 H17 H17 H  0 1 N N N N N N 22.421 25.284 -3.703 5.721  1.294  -1.977 H17 NK6 45 
NK6 H18 H18 H  0 1 N N N N N N 20.981 26.146 -4.343 6.188  2.656  -0.930 H18 NK6 46 
NK6 CL2 CL2 CL 0 0 N Y N N N N 21.948 26.858 -3.039 7.765  0.854  -0.802 CL2 NK6 47 
NK6 H20 H20 H  0 1 N N N N N N 19.281 21.696 -2.128 1.681  1.352  -1.130 H20 NK6 48 
NK6 H21 H21 H  0 1 N N N N N N 18.419 21.909 -0.566 0.936  -0.019 -0.273 H21 NK6 49 
NK6 H22 H22 H  0 1 N N N N N N 17.312 20.632 -3.106 -0.237 2.782  -0.599 H22 NK6 50 
NK6 H23 H23 H  0 1 N N N N N N 17.776 19.791 -1.588 -0.827 1.285  -1.365 H23 NK6 51 
NK6 H24 H24 H  0 1 N N N N N N 15.679 17.676 1.772  -4.668 -0.404 -1.631 H24 NK6 52 
NK6 H25 H25 H  0 1 N N N N N N 14.849 19.266 1.869  -4.070 -1.146 -0.128 H25 NK6 53 
NK6 H26 H26 H  0 1 N N N N N N 13.082 18.510 0.401  -4.842 0.829  1.155  H26 NK6 54 
NK6 H27 H27 H  0 1 N N N N N N 13.294 17.299 1.711  -6.189 0.079  0.266  H27 NK6 55 
NK6 H28 H28 H  0 1 N N N N N N 12.233 15.681 0.205  -6.663 3.632  -0.235 H28 NK6 56 
NK6 H29 H29 H  0 1 N N N N N N 12.097 16.752 -1.020 -7.326 2.237  0.383  H29 NK6 57 
NK6 H31 H31 H  0 1 N N N N N N 17.504 18.251 0.993  -1.690 0.082  -2.426 H31 NK6 58 
NK6 H32 H32 H  0 1 N N N N N N 19.026 25.231 -3.520 3.587  2.076  -0.529 H32 NK6 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
NK6 C17 C16 SING N N 1  
NK6 N4  C16 SING N N 2  
NK6 N4  C15 SING N N 3  
NK6 C16 O2  DOUB N N 4  
NK6 C14 C13 SING N N 5  
NK6 C14 C18 SING N N 6  
NK6 C14 C15 SING N N 7  
NK6 C12 C13 SING N N 8  
NK6 C12 N3  SING N N 9  
NK6 C19 C18 SING N N 10 
NK6 C19 N3  SING N N 11 
NK6 N3  C11 SING N N 12 
NK6 C2  C3  SING N N 13 
NK6 C2  C1  SING N N 14 
NK6 C3  C4  SING N N 15 
NK6 N1  C1  SING N N 16 
NK6 C11 O1  DOUB N N 17 
NK6 C11 C4  SING N N 18 
NK6 C1  C21 SING N N 19 
NK6 C4  N2  SING N N 20 
NK6 C4  C20 SING N N 21 
NK6 N2  C5  SING N N 22 
NK6 C21 C20 SING N N 23 
NK6 C5  C6  DOUB Y N 24 
NK6 C5  C10 SING Y N 25 
NK6 C6  C7  SING Y N 26 
NK6 C10 C9  DOUB Y N 27 
NK6 C9  C8  SING Y N 28 
NK6 C7  C8  DOUB Y N 29 
NK6 C8  CL1 SING N N 30 
NK6 C1  H1  SING N N 31 
NK6 C2  H2  SING N N 32 
NK6 C2  H3  SING N N 33 
NK6 C3  H4  SING N N 34 
NK6 C3  H5  SING N N 35 
NK6 C6  H6  SING N N 36 
NK6 C7  H7  SING N N 37 
NK6 C9  H8  SING N N 38 
NK6 C10 H9  SING N N 39 
NK6 C12 H10 SING N N 40 
NK6 C12 H11 SING N N 41 
NK6 C13 H12 SING N N 42 
NK6 C13 H13 SING N N 43 
NK6 C14 H14 SING N N 44 
NK6 C15 H15 SING N N 45 
NK6 C15 H16 SING N N 46 
NK6 C17 H17 SING N N 47 
NK6 C17 H18 SING N N 48 
NK6 C17 CL2 SING N N 49 
NK6 C18 H20 SING N N 50 
NK6 C18 H21 SING N N 51 
NK6 C19 H22 SING N N 52 
NK6 C19 H23 SING N N 53 
NK6 C20 H24 SING N N 54 
NK6 C20 H25 SING N N 55 
NK6 C21 H26 SING N N 56 
NK6 C21 H27 SING N N 57 
NK6 N1  H28 SING N N 58 
NK6 N1  H29 SING N N 59 
NK6 N2  H31 SING N N 60 
NK6 N4  H32 SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
NK6 InChI            InChI                1.06  "InChI=1S/C21H30Cl2N4O2/c22-13-19(28)25-14-15-7-11-27(12-8-15)20(29)21(9-5-17(24)6-10-21)26-18-3-1-16(23)2-4-18/h1-4,15,17,26H,5-14,24H2,(H,25,28)/t17-,21-" 
NK6 InChIKey         InChI                1.06  SCBXDYBWLTUMQQ-CYWCHRQTSA-N                                                                                                                                  
NK6 SMILES_CANONICAL CACTVS               3.385 "N[C@H]1CC[C@@](CC1)(Nc2ccc(Cl)cc2)C(=O)N3CC[C@H](CC3)CNC(=O)CCl"                                                                                            
NK6 SMILES           CACTVS               3.385 "N[CH]1CC[C](CC1)(Nc2ccc(Cl)cc2)C(=O)N3CC[CH](CC3)CNC(=O)CCl"                                                                                                
NK6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1NC2(CCC(CC2)N)C(=O)N3CCC(CC3)CNC(=O)CCl)Cl"                                                                                                        
NK6 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1NC2(CCC(CC2)N)C(=O)N3CCC(CC3)CNC(=O)CCl)Cl"                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           NK6 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[[1-[4-azanyl-1-[(4-chlorophenyl)amino]cyclohexyl]carbonylpiperidin-4-yl]methyl]-2-chloranyl-ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
NK6 "Create component"  2022-08-17 PDBE 
NK6 "Initial release"   2023-09-20 RCSB 
NK6 "Modify descriptor" 2023-09-23 RCSB 
NK6 "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            NK6 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C17 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
