data_ND6
# 
_chem_comp.id                                    ND6 
_chem_comp.name                                  "6-[4-({4-[(2R)-1-hydroxypropan-2-yl]phenyl}acetyl)piperazin-1-yl]pyridazine-3-carbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H23 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-03-31 
_chem_comp.pdbx_modified_date                    2023-03-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        365.429 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ND6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7UE3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ND6 C01 C1  C 0 1 N N N -30.359 -14.575 -5.314  7.895  0.824  -0.394 C01 ND6 1  
ND6 C02 C2  C 0 1 N N R -31.809 -14.050 -5.445  6.941  0.658  0.790  C02 ND6 2  
ND6 C03 C3  C 0 1 N N N -32.898 -15.126 -5.354  7.342  -0.577 1.599  C03 ND6 3  
ND6 C04 C4  C 0 1 Y N N -31.978 -13.265 -6.746  5.532  0.490  0.281  C04 ND6 4  
ND6 C05 C5  C 0 1 Y N N -32.037 -13.915 -7.972  5.219  -0.572 -0.546 C05 ND6 5  
ND6 C06 C6  C 0 1 Y N N -32.176 -13.161 -9.127  3.926  -0.730 -1.009 C06 ND6 6  
ND6 C07 C7  C 0 1 Y N N -32.227 -11.775 -9.086  2.946  0.175  -0.644 C07 ND6 7  
ND6 C08 C8  C 0 1 N N N -32.376 -10.956 -10.350 1.537  0.004  -1.149 C08 ND6 8  
ND6 C09 C9  C 0 1 N N N -33.830 -10.823 -10.746 0.757  -0.847 -0.181 C09 ND6 9  
ND6 C11 C10 C 0 1 N N N -35.399 -10.237 -12.527 -1.316 -1.964 0.505  C11 ND6 10 
ND6 C12 C11 C 0 1 N N N -35.572 -8.921  -13.239 -2.619 -1.228 0.837  C12 ND6 11 
ND6 C14 C12 C 0 1 Y N N -34.809 -8.086  -15.509 -4.569 -0.355 -0.149 C14 ND6 12 
ND6 C17 C13 C 0 1 Y N N -35.477 -6.870  -17.754 -6.990 0.741  0.305  C17 ND6 13 
ND6 C18 C14 C 0 1 N N N -35.899 -6.197  -19.034 -8.262 1.364  0.520  C18 ND6 14 
ND6 C20 C15 C 0 1 Y N N -34.127 -7.220  -17.604 -6.728 -0.526 0.842  C20 ND6 15 
ND6 C21 C16 C 0 1 Y N N -33.759 -7.875  -16.406 -5.486 -1.086 0.608  C21 ND6 16 
ND6 C22 C17 C 0 1 N N N -33.127 -8.947  -13.836 -2.512 0.054  -1.218 C22 ND6 17 
ND6 C23 C18 C 0 1 N N N -32.974 -10.116 -12.896 -1.206 -0.630 -1.635 C23 ND6 18 
ND6 C25 C19 C 0 1 Y N N -32.160 -11.128 -7.879  3.260  1.237  0.183  C25 ND6 19 
ND6 C26 C20 C 0 1 Y N N -32.033 -11.873 -6.724  4.553  1.395  0.646  C26 ND6 20 
ND6 N10 N1  N 0 1 N N N -34.080 -10.370 -12.046 -0.537 -1.136 -0.427 N10 ND6 21 
ND6 N13 N2  N 0 1 N N N -34.523 -8.747  -14.285 -3.311 -0.877 -0.409 N13 ND6 22 
ND6 N15 N3  N 0 1 Y N N -36.040 -7.714  -15.714 -4.905 0.839  -0.624 N15 ND6 23 
ND6 N16 N4  N 0 1 Y N N -36.386 -7.115  -16.855 -6.057 1.361  -0.408 N16 ND6 24 
ND6 N19 N5  N 0 1 N N N -36.154 -5.675  -20.006 -9.271 1.857  0.690  N19 ND6 25 
ND6 O04 O1  O 0 1 N N N -29.387 -13.536 -5.335  9.211  1.100  0.090  O04 ND6 26 
ND6 O24 O2  O 0 1 N N N -34.740 -11.066 -10.059 1.292  -1.273 0.821  O24 ND6 27 
ND6 H1  H1  H 0 1 N N N -30.268 -15.120 -4.363  7.909  -0.094 -0.981 H1  ND6 28 
ND6 H2  H2  H 0 1 N N N -30.158 -15.260 -6.151  7.557  1.651  -1.019 H2  ND6 29 
ND6 H3  H3  H 0 1 N N N -31.975 -13.347 -4.615  6.994  1.542  1.427  H3  ND6 30 
ND6 H4  H4  H 0 1 N N N -32.778 -15.692 -4.418  6.662  -0.695 2.443  H4  ND6 31 
ND6 H5  H5  H 0 1 N N N -33.888 -14.647 -5.368  7.288  -1.461 0.963  H5  ND6 32 
ND6 H6  H6  H 0 1 N N N -32.809 -15.811 -6.210  8.360  -0.456 1.968  H6  ND6 33 
ND6 H7  H7  H 0 1 N N N -31.975 -14.992 -8.025  5.984  -1.280 -0.830 H7  ND6 34 
ND6 H8  H8  H 0 1 N N N -32.246 -13.664 -10.080 3.681  -1.559 -1.655 H8  ND6 35 
ND6 H9  H9  H 0 1 N N N -31.826 -11.450 -11.165 1.062  0.980  -1.239 H9  ND6 36 
ND6 H10 H10 H 0 1 N N N -31.957 -9.953  -10.180 1.557  -0.482 -2.125 H10 ND6 37 
ND6 H11 H11 H 0 1 N N N -36.099 -10.285 -11.680 -0.744 -2.126 1.418  H11 ND6 38 
ND6 H12 H12 H 0 1 N N N -35.613 -11.058 -13.227 -1.543 -2.924 0.040  H12 ND6 39 
ND6 H13 H13 H 0 1 N N N -35.493 -8.102  -12.509 -3.258 -1.875 1.439  H13 ND6 40 
ND6 H14 H14 H 0 1 N N N -36.564 -8.895  -13.714 -2.391 -0.320 1.396  H14 ND6 41 
ND6 H15 H15 H 0 1 N N N -33.400 -6.999  -18.371 -7.473 -1.048 1.426  H15 ND6 42 
ND6 H16 H16 H 0 1 N N N -32.746 -8.188  -16.201 -5.233 -2.060 0.998  H16 ND6 43 
ND6 H17 H17 H 0 1 N N N -32.496 -9.122  -14.720 -2.286 0.944  -0.632 H17 ND6 44 
ND6 H18 H18 H 0 1 N N N -32.790 -8.036  -13.320 -3.074 0.338  -2.108 H18 ND6 45 
ND6 H19 H19 H 0 1 N N N -32.800 -11.017 -13.503 -1.425 -1.460 -2.307 H19 ND6 46 
ND6 H20 H20 H 0 1 N N N -32.096 -9.926  -12.261 -0.560 0.091  -2.137 H20 ND6 47 
ND6 H21 H21 H 0 1 N N N -32.206 -10.050 -7.833  2.494  1.944  0.468  H21 ND6 48 
ND6 H22 H22 H 0 1 N N N -31.975 -11.361 -5.775  4.797  2.222  1.295  H22 ND6 49 
ND6 H23 H23 H 0 1 N N N -28.519 -13.912 -5.252  9.870  1.217  -0.608 H23 ND6 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ND6 N19 C18 TRIP N N 1  
ND6 C18 C17 SING N N 2  
ND6 C17 C20 DOUB Y N 3  
ND6 C17 N16 SING Y N 4  
ND6 C20 C21 SING Y N 5  
ND6 N16 N15 DOUB Y N 6  
ND6 C21 C14 DOUB Y N 7  
ND6 N15 C14 SING Y N 8  
ND6 C14 N13 SING N N 9  
ND6 N13 C22 SING N N 10 
ND6 N13 C12 SING N N 11 
ND6 C22 C23 SING N N 12 
ND6 C12 C11 SING N N 13 
ND6 C23 N10 SING N N 14 
ND6 C11 N10 SING N N 15 
ND6 N10 C09 SING N N 16 
ND6 C09 C08 SING N N 17 
ND6 C09 O24 DOUB N N 18 
ND6 C08 C07 SING N N 19 
ND6 C06 C07 DOUB Y N 20 
ND6 C06 C05 SING Y N 21 
ND6 C07 C25 SING Y N 22 
ND6 C05 C04 DOUB Y N 23 
ND6 C25 C26 DOUB Y N 24 
ND6 C04 C26 SING Y N 25 
ND6 C04 C02 SING N N 26 
ND6 C02 C03 SING N N 27 
ND6 C02 C01 SING N N 28 
ND6 O04 C01 SING N N 29 
ND6 C01 H1  SING N N 30 
ND6 C01 H2  SING N N 31 
ND6 C02 H3  SING N N 32 
ND6 C03 H4  SING N N 33 
ND6 C03 H5  SING N N 34 
ND6 C03 H6  SING N N 35 
ND6 C05 H7  SING N N 36 
ND6 C06 H8  SING N N 37 
ND6 C08 H9  SING N N 38 
ND6 C08 H10 SING N N 39 
ND6 C11 H11 SING N N 40 
ND6 C11 H12 SING N N 41 
ND6 C12 H13 SING N N 42 
ND6 C12 H14 SING N N 43 
ND6 C20 H15 SING N N 44 
ND6 C21 H16 SING N N 45 
ND6 C22 H17 SING N N 46 
ND6 C22 H18 SING N N 47 
ND6 C23 H19 SING N N 48 
ND6 C23 H20 SING N N 49 
ND6 C25 H21 SING N N 50 
ND6 C26 H22 SING N N 51 
ND6 O04 H23 SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ND6 SMILES           ACDLabs              12.01 "O=C(Cc1ccc(cc1)C(C)CO)N1CCN(CC1)c1ccc(C#N)nn1"                                                                                              
ND6 InChI            InChI                1.03  "InChI=1S/C20H23N5O2/c1-15(14-26)17-4-2-16(3-5-17)12-20(27)25-10-8-24(9-11-25)19-7-6-18(13-21)22-23-19/h2-7,15,26H,8-12,14H2,1H3/t15-/m0/s1" 
ND6 InChIKey         InChI                1.03  YTRLPBJDLDKLMQ-HNNXBMFYSA-N                                                                                                                  
ND6 SMILES_CANONICAL CACTVS               3.385 "C[C@@H](CO)c1ccc(CC(=O)N2CCN(CC2)c3ccc(nn3)C#N)cc1"                                                                                         
ND6 SMILES           CACTVS               3.385 "C[CH](CO)c1ccc(CC(=O)N2CCN(CC2)c3ccc(nn3)C#N)cc1"                                                                                           
ND6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](CO)c1ccc(cc1)CC(=O)N2CCN(CC2)c3ccc(nn3)C#N"                                                                                         
ND6 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(CO)c1ccc(cc1)CC(=O)N2CCN(CC2)c3ccc(nn3)C#N"                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ND6 "SYSTEMATIC NAME" ACDLabs              12.01 "6-[4-({4-[(2R)-1-hydroxypropan-2-yl]phenyl}acetyl)piperazin-1-yl]pyridazine-3-carbonitrile"         
ND6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-[4-[2-[4-[(2~{R})-1-oxidanylpropan-2-yl]phenyl]ethanoyl]piperazin-1-yl]pyridazine-3-carbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ND6 "Create component" 2022-03-31 RCSB 
ND6 "Initial release"  2023-03-29 RCSB 
# 
