data_LN6
#

_chem_comp.id                                   LN6
_chem_comp.name                                 "N~5~-[(1E)-pentanimidoyl]-L-ornithine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H21 N3 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "N5-(1-iminopentyl)-L-ornithine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-10-20
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       215.293
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LN6
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3P8P
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LN6  C     C     C  0  1  N  N  N  -5.029  -2.170  21.625   4.987  -0.298   0.060  C     LN6   1  
LN6  N     N     N  0  1  N  N  N  -3.351  -2.342  23.393   3.791   1.779  -0.343  N     LN6   2  
LN6  CA    CA    C  0  1  N  N  S  -3.589  -1.846  22.030   3.739   0.492   0.364  CA    LN6   3  
LN6  CB    CB    C  0  1  N  N  N  -2.606  -2.513  21.065   2.512  -0.296  -0.100  CB    LN6   4  
LN6  CD    CD    C  0  1  N  N  N  -1.501  -2.358  18.797   0.014  -0.341  -0.144  CD    LN6   5  
LN6  NE    NE    N  0  1  N  N  N  -1.753  -3.724  18.314  -1.202   0.370   0.257  NE    LN6   6  
LN6  CG    CG    C  0  1  N  N  N  -2.641  -1.853  19.685   1.242   0.447   0.319  CG    LN6   7  
LN6  CZ    CZ    C  0  1  N  N  N  -2.715  -3.978  17.431  -2.432  -0.149  -0.052  CZ    LN6   8  
LN6  OA1   OA1   O  0  1  N  N  N  -5.461  -1.651  20.573   5.651  -0.028  -0.912  OA1   LN6   9  
LN6  OA2   OA2   O  0  1  N  N  N  -5.671  -2.927  22.384   5.363  -1.297   0.874  OA2   LN6  10  
LN6  CH1   CH1   C  0  1  N  N  N  -2.947  -5.412  16.951  -3.683   0.582   0.361  CH1   LN6  11  
LN6  NH2   NH2   N  0  1  N  N  N  -3.445  -2.986  16.928  -2.519  -1.266  -0.697  NH2   LN6  12  
LN6  CI1   CI1   C  0  1  N  N  N  -1.529  -5.088  14.891  -6.181   0.537   0.316  CI1   LN6  13  
LN6  CK1   CK1   C  0  1  N  N  N  -0.349  -5.620  14.074  -7.408  -0.250  -0.147  CK1   LN6  14  
LN6  CT1   CT1   C  0  1  N  N  N  -1.749  -5.928  16.151  -4.910  -0.205  -0.103  CT1   LN6  15  
LN6  HN    HN    H  0  1  N  N  N  -2.411  -2.134  23.665   4.556   2.345  -0.008  HN    LN6  16  
LN6  HNA   HNA   H  0  1  N  N  N  -3.987  -1.898  24.025   3.852   1.641  -1.340  HNA   LN6  17  
LN6  HA    HA    H  0  1  N  N  N  -3.438  -0.757  21.994   3.673   0.669   1.437  HA    LN6  18  
LN6  HB    HB    H  0  1  N  N  N  -1.589  -2.423  21.476   2.533  -0.396  -1.185  HB    LN6  19  
LN6  HBA   HBA   H  0  1  N  N  N  -2.878  -3.573  20.958   2.522  -1.286   0.357  HBA   LN6  20  
LN6  HD    HD    H  0  1  N  N  N  -0.570  -2.356  19.382   0.024  -1.331   0.312  HD    LN6  21  
LN6  HDA   HDA   H  0  1  N  N  N  -1.405  -1.688  17.930   0.036  -0.441  -1.230  HDA   LN6  22  
LN6  HNE   HNE   H  0  1  N  N  N  -1.190  -4.477  18.656  -1.137   1.208   0.741  HNE   LN6  23  
LN6  HG    HG    H  0  1  N  N  N  -3.600  -2.091  19.202   1.220   0.547   1.404  HG    LN6  24  
LN6  HGA   HGA   H  0  1  N  N  N  -2.540  -0.765  19.809   1.232   1.436  -0.138  HGA   LN6  25  
LN6  HOA2  HOA2  H  0  0  N  N  N  -6.548  -3.052  22.040   6.170  -1.775   0.638  HOA2  LN6  26  
LN6  HH1   HH1   H  0  1  N  N  N  -3.097  -6.061  17.826  -3.704   0.683   1.446  HH1   LN6  27  
LN6  HH1A  HH1A  H  0  0  N  N  N  -3.840  -5.433  16.309  -3.693   1.572  -0.096  HH1A  LN6  28  
LN6  HNH2  HNH2  H  0  0  N  N  N  -4.104  -3.312  16.250  -3.390  -1.634  -0.915  HNH2  LN6  29  
LN6  HI1   HI1   H  0  1  N  N  N  -1.319  -4.049  15.186  -6.191   1.527  -0.140  HI1   LN6  30  
LN6  HI1A  HI1A  H  0  0  N  N  N  -2.438  -5.127  14.273  -6.202   0.637   1.401  HI1A  LN6  31  
LN6  HK1   HK1   H  0  1  N  N  N  -0.214  -4.999  13.176  -8.313   0.279   0.151  HK1   LN6  32  
LN6  HK1A  HK1A  H  0  0  N  N  N   0.565  -5.585  14.685  -7.387  -0.351  -1.232  HK1A  LN6  33  
LN6  HK1B  HK1B  H  0  0  N  N  N  -0.550  -6.659  13.774  -7.398  -1.240   0.309  HK1B  LN6  34  
LN6  HT1   HT1   H  0  1  N  N  N  -0.848  -5.872  16.780  -4.889  -0.306  -1.188  HT1   LN6  35  
LN6  HT1A  HT1A  H  0  0  N  N  N  -1.938  -6.971  15.857  -4.901  -1.195   0.354  HT1A  LN6  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LN6  OA1  C     DOUB  N  N   1  
LN6  C    CA    SING  N  N   2  
LN6  C    OA2   SING  N  N   3  
LN6  CA   N     SING  N  N   4  
LN6  N    HN    SING  N  N   5  
LN6  N    HNA   SING  N  N   6  
LN6  CB   CA    SING  N  N   7  
LN6  CA   HA    SING  N  N   8  
LN6  CG   CB    SING  N  N   9  
LN6  CB   HB    SING  N  N  10  
LN6  CB   HBA   SING  N  N  11  
LN6  NE   CD    SING  N  N  12  
LN6  CD   CG    SING  N  N  13  
LN6  CD   HD    SING  N  N  14  
LN6  CD   HDA   SING  N  N  15  
LN6  CZ   NE    SING  N  N  16  
LN6  NE   HNE   SING  N  N  17  
LN6  CG   HG    SING  N  N  18  
LN6  CG   HGA   SING  N  N  19  
LN6  NH2  CZ    DOUB  N  N  20  
LN6  CH1  CZ    SING  N  N  21  
LN6  OA2  HOA2  SING  N  N  22  
LN6  CT1  CH1   SING  N  N  23  
LN6  CH1  HH1   SING  N  N  24  
LN6  CH1  HH1A  SING  N  N  25  
LN6  NH2  HNH2  SING  N  N  26  
LN6  CK1  CI1   SING  N  N  27  
LN6  CI1  CT1   SING  N  N  28  
LN6  CI1  HI1   SING  N  N  29  
LN6  CI1  HI1A  SING  N  N  30  
LN6  CK1  HK1   SING  N  N  31  
LN6  CK1  HK1A  SING  N  N  32  
LN6  CK1  HK1B  SING  N  N  33  
LN6  CT1  HT1   SING  N  N  34  
LN6  CT1  HT1A  SING  N  N  35  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LN6  SMILES            ACDLabs               12.01  "O=C(O)C(N)CCCNC(=[N@H])CCCC"  
LN6  SMILES_CANONICAL  CACTVS                3.370  "CCCCC(=N)NCCC[C@H](N)C(O)=O"  
LN6  SMILES            CACTVS                3.370  "CCCCC(=N)NCCC[CH](N)C(O)=O"  
LN6  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "[H]/N=C(\CCCC)/NCCC[C@@H](C(=O)O)N"  
LN6  SMILES            "OpenEye OEToolkits"  1.7.0  "CCCCC(=N)NCCCC(C(=O)O)N"  
LN6  InChI             InChI                 1.03   "InChI=1S/C10H21N3O2/c1-2-3-6-9(12)13-7-4-5-8(11)10(14)15/h8H,2-7,11H2,1H3,(H2,12,13)(H,14,15)/t8-/m0/s1"  
LN6  InChIKey          InChI                 1.03   YJYNJYPKPDAGPU-QMMMGPOBSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LN6  "SYSTEMATIC NAME"  ACDLabs               12.01  "N~5~-[(1E)-pentanimidoyl]-L-ornithine"  
LN6  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "(2S)-2-azanyl-5-(pentanimidoylamino)pentanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LN6  "Create component"   2010-10-20  RCSB  
LN6  "Modify descriptor"  2011-06-04  RCSB  
LN6  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     LN6
_pdbx_chem_comp_synonyms.name        "N5-(1-iminopentyl)-L-ornithine"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
