data_KG6
# 
_chem_comp.id                                    KG6 
_chem_comp.name                                  "3-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(2-azanylethyl)amino]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylamino]-3-oxidanylidene-propanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H35 N13 O9" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-25 
_chem_comp.pdbx_modified_date                    2023-01-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        697.659 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KG6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZZ9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KG6 N1  N1  N 0 1 N N N 14.106 9.386  12.027 1.913   1.914  -2.369 N1  KG6 1  
KG6 C7  C1  C 0 1 Y N N 21.462 12.920 11.879 -4.397  4.195  2.563  C7  KG6 2  
KG6 C8  C2  C 0 1 Y N N 22.859 11.359 12.877 -5.377  2.132  2.897  C8  KG6 3  
KG6 N2  N2  N 0 1 Y N N 19.004 12.316 12.229 -2.350  4.020  1.063  N2  KG6 4  
KG6 C9  C3  C 0 1 Y N N 20.688 11.029 13.103 -3.505  2.188  1.564  C9  KG6 5  
KG6 O1  O1  O 0 1 N N N 16.181 4.572  13.469 -6.862  -3.199 0.271  O1  KG6 6  
KG6 C1  C4  C 0 1 N N N 12.844 8.755  12.449 0.991   1.483  -3.428 C1  KG6 7  
KG6 O5  O2  O 0 1 N N N 19.247 9.852  16.481 -0.246  -0.232 1.670  O5  KG6 8  
KG6 C5  C5  C 0 1 Y N N 18.499 11.268 12.850 -1.769  3.006  0.465  C5  KG6 9  
KG6 C6  C6  C 0 1 Y N N 20.382 12.166 12.369 -3.424  3.579  1.754  C6  KG6 10 
KG6 N3  N3  N 0 1 N N N 21.321 14.050 11.155 -4.373  5.561  2.783  N3  KG6 11 
KG6 C4  C7  C 0 1 N N N 17.111 10.961 12.888 -0.600  3.093  -0.357 C4  KG6 12 
KG6 O4  O3  O 0 1 N N N 19.403 7.171  16.161 -0.796  -2.410 0.358  O4  KG6 13 
KG6 C3  C8  C 0 1 N N N 15.930 10.798 12.895 0.359   3.164  -1.031 C3  KG6 14 
KG6 O3  O4  O 0 1 N N N 13.331 5.562  11.670 -9.866  -3.180 -2.337 O3  KG6 15 
KG6 C2  C9  C 0 1 N N N 14.495 10.465 12.930 1.561   3.253  -1.877 C2  KG6 16 
KG6 N4  N4  N 0 1 Y N N 22.709 12.478 12.153 -5.343  3.436  3.105  N4  KG6 17 
KG6 N   N5  N 0 1 N N N 11.716 7.729  14.436 0.115   -0.478 -4.605 N   KG6 18 
KG6 C   C10 C 0 1 N N N 12.987 7.929  13.716 1.118   -0.028 -3.631 C   KG6 19 
KG6 O   O5  O 0 1 N N N 18.794 8.169  13.375 -3.305  -0.168 -0.211 O   KG6 20 
KG6 C10 C11 C 0 1 N N R 19.329 9.210  14.178 -2.122  0.506  0.270  C10 KG6 21 
KG6 C11 C12 C 0 1 N N R 17.994 7.294  14.206 -3.028  -1.578 -0.177 C11 KG6 22 
KG6 C12 C13 C 0 1 N N N 16.544 7.350  13.769 -4.303  -2.351 0.164  C12 KG6 23 
KG6 C13 C14 C 0 1 N N N 16.002 5.312  12.504 -6.534  -2.662 -0.766 C13 KG6 24 
KG6 C14 C15 C 0 1 N N N 15.538 4.762  11.172 -7.514  -2.562 -1.906 C14 KG6 25 
KG6 C15 C16 C 0 1 N N N 14.066 4.959  10.901 -8.866  -3.047 -1.450 C15 KG6 26 
KG6 C16 C17 C 0 1 N N S 18.228 7.772  15.644 -1.967  -1.810 0.916  C16 KG6 27 
KG6 C17 C18 C 0 1 N N R 18.472 9.267  15.440 -1.648  -0.389 1.443  C17 KG6 28 
KG6 C18 C19 C 0 1 N N N 14.053 9.783  10.608 3.306   1.875  -2.835 C18 KG6 29 
KG6 C19 C20 C 0 1 N N R 15.415 9.680  9.942  4.248   1.941  -1.632 C19 KG6 30 
KG6 C20 C21 C 0 1 N N R 16.933 8.232  9.016  5.330   0.453  -0.225 C20 KG6 31 
KG6 C21 C22 C 0 1 N N R 16.714 9.329  7.965  6.309   0.659  -1.409 C21 KG6 32 
KG6 C22 C23 C 0 1 N N S 15.443 10.038 8.458  5.713   1.903  -2.111 C22 KG6 33 
KG6 C23 C24 C 0 1 Y N N 16.007 6.215  7.758  4.534   -1.942 -0.233 C23 KG6 34 
KG6 C24 C25 C 0 1 Y N N 17.739 4.982  7.668  5.813   -2.838 1.272  C24 KG6 35 
KG6 C25 C26 C 0 1 Y N N 18.753 4.028  7.432  6.511   -3.643 2.188  C25 KG6 36 
KG6 C26 C27 C 0 1 Y N N 20.182 5.415  8.611  7.773   -1.805 2.788  C26 KG6 37 
KG6 C27 C28 C 0 1 Y N N 18.100 6.103  8.402  6.169   -1.482 1.174  C27 KG6 38 
KG6 N10 N6  N 0 1 N N N 18.556 2.853  6.808  6.205   -4.985 2.328  N10 KG6 39 
KG6 N11 N7  N 0 1 Y N N 19.984 4.296  7.908  7.473   -3.085 2.916  N11 KG6 40 
KG6 N12 N8  N 0 1 Y N N 19.310 6.377  8.915  7.145   -1.014 1.944  N12 KG6 41 
KG6 N5  N9  N 0 1 Y N N 21.911 10.569 13.401 -4.489  1.512  2.148  N5  KG6 42 
KG6 N6  N10 N 0 1 Y N N 19.475 10.449 13.418 -2.453  1.850  0.748  N6  KG6 43 
KG6 N7  N11 N 0 1 N N N 16.234 6.624  12.544 -5.293  -2.154 -0.899 N7  KG6 44 
KG6 N8  N12 N 0 1 Y N N 16.982 6.897  8.446  5.342   -0.942 0.222  N8  KG6 45 
KG6 N9  N13 N 0 1 Y N N 16.412 5.066  7.263  4.812   -3.053 0.384  N9  KG6 46 
KG6 O2  O6  O 0 1 N N N 13.653 4.413  9.760  -9.050  -3.317 -0.287 O2  KG6 47 
KG6 O6  O7  O 0 1 N N N 15.876 8.314  9.964  4.045   0.795  -0.788 O6  KG6 48 
KG6 O7  O8  O 0 1 N N N 17.850 10.189 7.979  7.631   0.925  -0.936 O7  KG6 49 
KG6 O8  O9  O 0 1 N N N 15.545 11.442 8.269  6.403   3.086  -1.703 O8  KG6 50 
KG6 H2  H2  H 0 1 N N N 23.878 11.054 13.062 -6.163  1.553  3.358  H2  KG6 51 
KG6 H3  H3  H 0 1 N N N 12.100 9.545  12.628 -0.032  1.726  -3.141 H3  KG6 52 
KG6 H4  H4  H 0 1 N N N 12.493 8.098  11.640 1.239   1.996  -4.357 H4  KG6 53 
KG6 H5  H5  H 0 1 N N N 18.729 9.896  17.276 0.098   -0.772 2.395  H5  KG6 54 
KG6 H6  H6  H 0 1 N N N 22.224 14.409 10.918 -5.052  5.975  3.339  H6  KG6 55 
KG6 H7  H7  H 0 1 N N N 20.812 13.848 10.318 -3.677  6.105  2.381  H7  KG6 56 
KG6 H8  H8  H 0 1 N N N 19.546 7.469  17.052 -0.095  -2.579 1.002  H8  KG6 57 
KG6 H9  H9  H 0 1 N N N 12.447 5.571  11.322 -10.715 -3.495 -1.997 H9  KG6 58 
KG6 H10 H10 H 0 1 N N N 13.926 11.365 12.656 2.388   3.654  -1.291 H10 KG6 59 
KG6 H11 H11 H 0 1 N N N 14.236 10.166 13.956 1.362   3.910  -2.723 H11 KG6 60 
KG6 H12 H12 H 0 1 N N N 11.880 7.180  15.256 0.205   0.026  -5.475 H12 KG6 61 
KG6 H13 H13 H 0 1 N N N 11.339 8.617  14.699 0.178   -1.473 -4.756 H13 KG6 62 
KG6 H15 H15 H 0 1 N N N 13.392 6.943  13.445 2.116   -0.263 -4.001 H15 KG6 63 
KG6 H16 H16 H 0 1 N N N 13.691 8.442  14.388 0.955   -0.537 -2.680 H16 KG6 64 
KG6 H17 H17 H 0 1 N N N 20.336 8.903  14.498 -1.362  0.551  -0.510 H17 KG6 65 
KG6 H18 H18 H 0 1 N N N 18.355 6.259  14.115 -2.642  -1.904 -1.143 H18 KG6 66 
KG6 H19 H19 H 0 1 N N N 16.276 8.406  13.615 -4.072  -3.412 0.253  H19 KG6 67 
KG6 H20 H20 H 0 1 N N N 15.929 6.929  14.578 -4.707  -1.987 1.109  H20 KG6 68 
KG6 H21 H21 H 0 1 N N N 15.751 3.683  11.151 -7.591  -1.524 -2.230 H21 KG6 69 
KG6 H22 H22 H 0 1 N N N 16.106 5.264  10.375 -7.169  -3.177 -2.737 H22 KG6 70 
KG6 H23 H23 H 0 1 N N N 17.342 7.594  16.271 -2.371  -2.433 1.714  H23 KG6 71 
KG6 H24 H24 H 0 1 N N N 17.529 9.803  15.257 -2.214  -0.175 2.350  H24 KG6 72 
KG6 H25 H25 H 0 1 N N N 13.702 10.824 10.542 3.479   0.948  -3.382 H25 KG6 73 
KG6 H26 H26 H 0 1 N N N 13.348 9.124  10.080 3.493   2.725  -3.491 H26 KG6 74 
KG6 H27 H27 H 0 1 N N N 16.125 10.327 10.478 4.064   2.855  -1.067 H27 KG6 75 
KG6 H28 H28 H 0 1 N N N 17.889 8.437  9.521  5.578   1.121  0.599  H28 KG6 76 
KG6 H29 H29 H 0 1 N N N 16.545 8.883  6.974  6.302   -0.204 -2.075 H29 KG6 77 
KG6 H30 H30 H 0 1 N N N 14.560 9.622  7.951  5.757   1.788  -3.194 H30 KG6 78 
KG6 H31 H31 H 0 1 N N N 15.001 6.588  7.635  3.773   -1.827 -0.990 H31 KG6 79 
KG6 H32 H32 H 0 1 N N N 21.185 5.560  8.984  8.562   -1.393 3.399  H32 KG6 80 
KG6 H33 H33 H 0 1 N N N 19.410 2.334  6.797  5.501   -5.381 1.791  H33 KG6 81 
KG6 H34 H34 H 0 1 N N N 17.855 2.331  7.294  6.695   -5.530 2.964  H34 KG6 82 
KG6 H35 H35 H 0 1 N N N 16.193 7.138  11.687 -5.054  -1.658 -1.697 H35 KG6 83 
KG6 H36 H36 H 0 1 N N N 18.612 9.714  7.668  8.261   1.149  -1.635 H36 KG6 84 
KG6 H37 H37 H 0 1 N N N 14.751 11.862 8.579  7.343   3.090  -1.928 H37 KG6 85 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KG6 N10 C25 SING N N 1  
KG6 N9  C24 SING Y N 2  
KG6 N9  C23 DOUB Y N 3  
KG6 C25 C24 DOUB Y N 4  
KG6 C25 N11 SING Y N 5  
KG6 C24 C27 SING Y N 6  
KG6 C23 N8  SING Y N 7  
KG6 N11 C26 DOUB Y N 8  
KG6 C21 O7  SING N N 9  
KG6 C21 C22 SING N N 10 
KG6 C21 C20 SING N N 11 
KG6 O8  C22 SING N N 12 
KG6 C27 N8  SING Y N 13 
KG6 C27 N12 DOUB Y N 14 
KG6 N8  C20 SING N N 15 
KG6 C22 C19 SING N N 16 
KG6 C26 N12 SING Y N 17 
KG6 C20 O6  SING N N 18 
KG6 O2  C15 DOUB N N 19 
KG6 C19 O6  SING N N 20 
KG6 C19 C18 SING N N 21 
KG6 C18 N1  SING N N 22 
KG6 C15 C14 SING N N 23 
KG6 C15 O3  SING N N 24 
KG6 N3  C7  SING N N 25 
KG6 C14 C13 SING N N 26 
KG6 C7  N4  DOUB Y N 27 
KG6 C7  C6  SING Y N 28 
KG6 N1  C1  SING N N 29 
KG6 N1  C2  SING N N 30 
KG6 N4  C8  SING Y N 31 
KG6 N2  C6  SING Y N 32 
KG6 N2  C5  DOUB Y N 33 
KG6 C6  C9  DOUB Y N 34 
KG6 C1  C   SING N N 35 
KG6 C13 N7  SING N N 36 
KG6 C13 O1  DOUB N N 37 
KG6 N7  C12 SING N N 38 
KG6 C5  C4  SING N N 39 
KG6 C5  N6  SING Y N 40 
KG6 C8  N5  DOUB Y N 41 
KG6 C4  C3  TRIP N N 42 
KG6 C3  C2  SING N N 43 
KG6 C9  N5  SING Y N 44 
KG6 C9  N6  SING Y N 45 
KG6 O   C10 SING N N 46 
KG6 O   C11 SING N N 47 
KG6 N6  C10 SING N N 48 
KG6 C   N   SING N N 49 
KG6 C12 C11 SING N N 50 
KG6 C10 C17 SING N N 51 
KG6 C11 C16 SING N N 52 
KG6 C17 C16 SING N N 53 
KG6 C17 O5  SING N N 54 
KG6 C16 O4  SING N N 55 
KG6 C8  H2  SING N N 56 
KG6 C1  H3  SING N N 57 
KG6 C1  H4  SING N N 58 
KG6 O5  H5  SING N N 59 
KG6 N3  H6  SING N N 60 
KG6 N3  H7  SING N N 61 
KG6 O4  H8  SING N N 62 
KG6 O3  H9  SING N N 63 
KG6 C2  H10 SING N N 64 
KG6 C2  H11 SING N N 65 
KG6 N   H12 SING N N 66 
KG6 N   H13 SING N N 67 
KG6 C   H15 SING N N 68 
KG6 C   H16 SING N N 69 
KG6 C10 H17 SING N N 70 
KG6 C11 H18 SING N N 71 
KG6 C12 H19 SING N N 72 
KG6 C12 H20 SING N N 73 
KG6 C14 H21 SING N N 74 
KG6 C14 H22 SING N N 75 
KG6 C16 H23 SING N N 76 
KG6 C17 H24 SING N N 77 
KG6 C18 H25 SING N N 78 
KG6 C18 H26 SING N N 79 
KG6 C19 H27 SING N N 80 
KG6 C20 H28 SING N N 81 
KG6 C21 H29 SING N N 82 
KG6 C22 H30 SING N N 83 
KG6 C23 H31 SING N N 84 
KG6 C26 H32 SING N N 85 
KG6 N10 H33 SING N N 86 
KG6 N10 H34 SING N N 87 
KG6 N7  H35 SING N N 88 
KG6 O7  H36 SING N N 89 
KG6 O8  H37 SING N N 90 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KG6 InChI            InChI                1.06  "InChI=1S/C28H35N13O9/c29-3-5-39(8-13-20(46)21(47)27(50-13)40-11-37-17-23(30)33-9-35-25(17)40)4-1-2-14-38-18-24(31)34-10-36-26(18)41(14)28-22(48)19(45)12(49-28)7-32-15(42)6-16(43)44/h9-13,19-22,27-28,45-48H,3-8,29H2,(H,32,42)(H,43,44)(H2,30,33,35)(H2,31,34,36)/t12-,13-,19-,20-,21-,22-,27-,28-/m1/s1" 
KG6 InChIKey         InChI                1.06  SROHEFTVUSADJE-QJYUSYPVSA-N                                                                                                                                                                                                                                                                                  
KG6 SMILES_CANONICAL CACTVS               3.385 "NCCN(CC#Cc1nc2c(N)ncnc2n1[C@@H]3O[C@H](CNC(=O)CC(O)=O)[C@@H](O)[C@H]3O)C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56"                                                                                                                                                                                     
KG6 SMILES           CACTVS               3.385 "NCCN(CC#Cc1nc2c(N)ncnc2n1[CH]3O[CH](CNC(=O)CC(O)=O)[CH](O)[CH]3O)C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56"                                                                                                                                                                                                
KG6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN(CCN)CC#Cc4nc5c(ncnc5n4[C@H]6[C@@H]([C@@H]([C@H](O6)CNC(=O)CC(=O)O)O)O)N)O)O)N"                                                                                                                                                                            
KG6 SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CCN)CC#Cc4nc5c(ncnc5n4C6C(C(C(O6)CNC(=O)CC(=O)O)O)O)N)O)O)N"                                                                                                                                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           KG6 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(2-azanylethyl)amino]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylamino]-3-oxidanylidene-propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KG6 "Create component"  2022-05-25 PDBE 
KG6 "Modify descriptor" 2022-08-22 RCSB 
KG6 "Initial release"   2023-01-11 RCSB 
# 
