data_JX6
# 
_chem_comp.id                                    JX6 
_chem_comp.name                                  "N~2~-[(benzyloxy)carbonyl]-N-{(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-methyl-L-leucinamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H33 N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-09 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        419.515 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JX6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8TQH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JX6 C1   C1  C 0 1 N N N N N N -10.529 -18.837 -18.758 4.642  0.814  -1.138 C1   JX6 1  
JX6 C10  C2  C 0 1 N N N N N N -6.012  -12.222 -19.130 -0.882 -2.796 0.582  C10  JX6 2  
JX6 C11  C3  C 0 1 N N N N N N -6.123  -14.620 -18.550 1.565  -2.317 0.420  C11  JX6 3  
JX6 C12  C4  C 0 1 N N N N N N -9.773  -16.505 -18.268 2.322  0.351  -0.822 C12  JX6 4  
JX6 C13  C5  C 0 1 N N N N N N -6.555  -12.904 -16.808 0.518  -3.999 -1.102 C13  JX6 5  
JX6 C14  C6  C 0 1 N N S N N N -9.124  -14.216 -17.953 -0.044 -0.216 -0.684 C14  JX6 6  
JX6 C15  C7  C 0 1 N N N N N N -10.529 -13.680 -17.990 -1.117 -0.258 0.373  C15  JX6 7  
JX6 C17  C8  C 0 1 N N S N N N -12.397 -12.643 -16.848 -3.445 -0.507 1.049  C17  JX6 8  
JX6 C19  C9  C 0 1 N N N N N N -13.235 -13.409 -15.809 -4.797 -0.174 0.417  C19  JX6 9  
JX6 C2   C10 C 0 1 Y N N N N N -11.968 -18.701 -19.218 5.904  0.960  -0.329 C2   JX6 10 
JX6 C20  C11 C 0 1 N N S N N N -13.412 -14.847 -16.295 -4.761 1.250  -0.144 C20  JX6 11 
JX6 C21  C12 C 0 1 N N N N N N -14.301 -14.945 -17.531 -4.581 2.276  0.999  C21  JX6 12 
JX6 C22  C13 C 0 1 N N N N N N -15.067 -16.256 -17.332 -5.460 3.449  0.510  C22  JX6 13 
JX6 C24  C14 C 0 1 N N N N N N -14.104 -15.739 -15.304 -6.093 1.609  -0.763 C24  JX6 14 
JX6 C3   C15 C 0 1 Y N N N N N -12.891 -19.697 -18.898 6.264  2.196  0.174  C3   JX6 15 
JX6 C34  C16 C 0 1 N N N N N N -8.220  -13.207 -18.661 0.023  -1.568 -1.397 C34  JX6 16 
JX6 C4   C17 C 0 1 Y N N N N N -14.211 -19.579 -19.325 7.423  2.330  0.916  C4   JX6 17 
JX6 C5   C18 C 0 1 Y N N N N N -14.605 -18.465 -20.058 8.221  1.228  1.156  C5   JX6 18 
JX6 C6   C19 C 0 1 Y N N N N N -13.685 -17.475 -20.392 7.861  -0.009 0.653  C6   JX6 19 
JX6 C7   C20 C 0 1 Y N N N N N -12.367 -17.596 -19.966 6.700  -0.144 -0.084 C7   JX6 20 
JX6 C8   C21 C 0 1 N N N N N N -12.348 -11.150 -16.523 -3.501 -1.907 1.664  C8   JX6 21 
JX6 C9   C22 C 0 1 N N N N N N -6.739  -13.258 -18.283 0.306  -2.670 -0.374 C9   JX6 22 
JX6 N13  N1  N 0 1 N N N N N N -9.099  -15.448 -18.715 1.249  0.070  -0.057 N13  JX6 23 
JX6 N16  N2  N 0 1 N N N N N N -11.035 -13.157 -16.878 -2.401 -0.467 0.022  N16  JX6 24 
JX6 N23  N3  N 0 1 N N N N N N -14.969 -16.548 -15.914 -6.464 2.844  -0.373 N23  JX6 25 
JX6 O11  O1  O 0 1 N N N N N N -9.766  -17.679 -19.110 3.531  0.513  -0.253 O11  JX6 26 
JX6 O26  O2  O 0 1 N N N N N N -13.872 -15.716 -14.119 -6.736 0.891  -1.500 O26  JX6 27 
JX6 O33  O3  O 0 1 N N N N N N -10.372 -16.524 -17.198 2.198  0.458  -2.026 O33  JX6 28 
JX6 O38  O4  O 0 1 N N N N N N -11.169 -13.745 -19.033 -0.825 -0.103 1.540  O38  JX6 29 
JX6 O9   O5  O 0 1 N N N N N N -13.659 -10.567 -16.700 -3.912 -2.848 0.670  O9   JX6 30 
JX6 H1   H1  H 0 1 N N N N N N -10.081 -19.721 -19.235 4.441  1.745  -1.669 H1   JX6 31 
JX6 H11  H2  H 0 1 N N N N N N -10.511 -18.961 -17.665 4.763  0.004  -1.857 H11  JX6 32 
JX6 H103 H3  H 0 0 N N N N N N -4.940  -12.232 -18.883 -0.859 -1.976 1.299  H103 JX6 33 
JX6 H102 H4  H 0 0 N N N N N N -6.144  -12.461 -20.195 -1.811 -2.757 0.014  H102 JX6 34 
JX6 H101 H5  H 0 0 N N N N N N -6.426  -11.224 -18.924 -0.821 -3.746 1.114  H101 JX6 35 
JX6 H113 H6  H 0 0 N N N N N N -5.061  -14.605 -18.263 1.956  -3.215 0.900  H113 JX6 36 
JX6 H112 H7  H 0 0 N N N N N N -6.652  -15.383 -17.960 2.318  -1.909 -0.254 H112 JX6 37 
JX6 H111 H8  H 0 0 N N N N N N -6.210  -14.858 -19.620 1.319  -1.577 1.182  H111 JX6 38 
JX6 H13  H9  H 0 1 N N N N N N -5.486  -12.945 -16.551 -0.379 -4.250 -1.668 H13  JX6 39 
JX6 H131 H10 H 0 0 N N N N N N -6.938  -11.889 -16.624 1.364  -3.909 -1.783 H131 JX6 40 
JX6 H132 H11 H 0 0 N N N N N N -7.109  -13.623 -16.187 0.720  -4.784 -0.373 H132 JX6 41 
JX6 H14  H12 H 0 1 N N N N N N -8.791  -14.372 -16.916 -0.277 0.565  -1.408 H14  JX6 42 
JX6 H10  H13 H 0 1 N N N N N N -12.862 -12.773 -17.836 -3.217 0.222  1.827  H10  JX6 43 
JX6 H19  H14 H 0 1 N N N N N N -14.219 -12.930 -15.700 -5.004 -0.876 -0.391 H19  JX6 44 
JX6 H191 H15 H 0 0 N N N N N N -12.716 -13.406 -14.839 -5.580 -0.247 1.172  H191 JX6 45 
JX6 H20  H16 H 0 1 N N N N N N -12.423 -15.267 -16.532 -3.960 1.350  -0.876 H20  JX6 46 
JX6 H21  H17 H 0 1 N N N N N N -13.694 -14.982 -18.448 -4.951 1.878  1.943  H21  JX6 47 
JX6 H211 H18 H 0 0 N N N N N N -14.993 -14.092 -17.584 -3.538 2.581  1.089  H211 JX6 48 
JX6 H221 H19 H 0 0 N N N N N N -14.610 -17.063 -17.924 -5.945 3.934  1.357  H221 JX6 49 
JX6 H22  H20 H 0 1 N N N N N N -16.119 -16.136 -17.628 -4.856 4.169  -0.041 H22  JX6 50 
JX6 H3   H21 H 0 1 N N N N N N -12.583 -20.556 -18.321 5.640  3.058  -0.013 H3   JX6 51 
JX6 H34  H22 H 0 1 N N N N N N -8.298  -13.386 -19.744 -0.929 -1.766 -1.890 H34  JX6 52 
JX6 H341 H23 H 0 0 N N N N N N -8.593  -12.199 -18.428 0.820  -1.548 -2.140 H341 JX6 53 
JX6 H4   H24 H 0 1 N N N N N N -14.928 -20.351 -19.087 7.704  3.296  1.309  H4   JX6 54 
JX6 H5   H25 H 0 1 N N N N N N -15.634 -18.367 -20.371 9.127  1.332  1.736  H5   JX6 55 
JX6 H6   H26 H 0 1 N N N N N N -13.992 -16.621 -20.977 8.486  -0.870 0.840  H6   JX6 56 
JX6 H7   H27 H 0 1 N N N N N N -11.649 -16.829 -20.216 6.417  -1.111 -0.473 H7   JX6 57 
JX6 H81  H28 H 0 1 N N N N N N -12.025 -11.014 -15.480 -2.513 -2.181 2.036  H81  JX6 58 
JX6 H8   H29 H 0 1 N N N N N N -11.634 -10.653 -17.196 -4.214 -1.914 2.488  H8   JX6 59 
JX6 HN13 H30 H 0 0 N N N N N N -8.581  -15.504 -19.568 1.332  0.056  0.910  HN13 JX6 60 
JX6 HN16 H31 H 0 0 N N N N N N -10.473 -13.116 -16.052 -2.635 -0.591 -0.912 HN16 JX6 61 
JX6 HN23 H32 H 0 0 N N N N N N -15.487 -17.268 -15.452 -7.288 3.279  -0.643 HN23 JX6 62 
JX6 HO9  H33 H 0 1 N N N N N N -13.624 -9.640  -16.497 -3.970 -3.759 0.990  HO9  JX6 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JX6 O26 C24  DOUB N N 1  
JX6 C24 N23  SING N N 2  
JX6 C24 C20  SING N N 3  
JX6 N23 C22  SING N N 4  
JX6 C22 C21  SING N N 5  
JX6 C21 C20  SING N N 6  
JX6 C20 C19  SING N N 7  
JX6 C19 C17  SING N N 8  
JX6 C8  C17  SING N N 9  
JX6 C17 N16  SING N N 10 
JX6 O9  C8   SING N N 11 
JX6 N16 C15  SING N N 12 
JX6 O38 C15  DOUB N N 13 
JX6 C15 C14  SING N N 14 
JX6 C34 C14  SING N N 15 
JX6 C14 N13  SING N N 16 
JX6 C9  C34  SING N N 17 
JX6 N13 C12  SING N N 18 
JX6 C12 O33  DOUB N N 19 
JX6 O11 C12  SING N N 20 
JX6 C1  O11  SING N N 21 
JX6 C2  C1   SING N N 22 
JX6 C2  C7   DOUB Y N 23 
JX6 C3  C2   SING Y N 24 
JX6 C7  C6   SING Y N 25 
JX6 C6  C5   DOUB Y N 26 
JX6 C5  C4   SING Y N 27 
JX6 C4  C3   DOUB Y N 28 
JX6 C10 C9   SING N N 29 
JX6 C11 C9   SING N N 30 
JX6 C13 C9   SING N N 31 
JX6 C1  H1   SING N N 32 
JX6 C1  H11  SING N N 33 
JX6 C10 H103 SING N N 34 
JX6 C10 H102 SING N N 35 
JX6 C10 H101 SING N N 36 
JX6 C11 H113 SING N N 37 
JX6 C11 H112 SING N N 38 
JX6 C11 H111 SING N N 39 
JX6 C13 H13  SING N N 40 
JX6 C13 H131 SING N N 41 
JX6 C13 H132 SING N N 42 
JX6 C14 H14  SING N N 43 
JX6 C17 H10  SING N N 44 
JX6 C19 H19  SING N N 45 
JX6 C19 H191 SING N N 46 
JX6 C20 H20  SING N N 47 
JX6 C21 H21  SING N N 48 
JX6 C21 H211 SING N N 49 
JX6 C22 H221 SING N N 50 
JX6 C22 H22  SING N N 51 
JX6 C3  H3   SING N N 52 
JX6 C34 H34  SING N N 53 
JX6 C34 H341 SING N N 54 
JX6 C4  H4   SING N N 55 
JX6 C5  H5   SING N N 56 
JX6 C6  H6   SING N N 57 
JX6 C7  H7   SING N N 58 
JX6 C8  H81  SING N N 59 
JX6 C8  H8   SING N N 60 
JX6 N13 HN13 SING N N 61 
JX6 N16 HN16 SING N N 62 
JX6 N23 HN23 SING N N 63 
JX6 O9  HO9  SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JX6 SMILES           ACDLabs              12.01 "CC(C)(C)CC(NC(=O)OCc1ccccc1)C(=O)NC(CC1CCNC1=O)CO"                                                                                                                                      
JX6 InChI            InChI                1.06  "InChI=1S/C22H33N3O5/c1-22(2,3)12-18(25-21(29)30-14-15-7-5-4-6-8-15)20(28)24-17(13-26)11-16-9-10-23-19(16)27/h4-8,16-18,26H,9-14H2,1-3H3,(H,23,27)(H,24,28)(H,25,29)/t16-,17+,18-/m0/s1" 
JX6 InChIKey         InChI                1.06  GVWXWUJUDUDFRS-KSZLIROESA-N                                                                                                                                                              
JX6 SMILES_CANONICAL CACTVS               3.385 "CC(C)(C)C[C@H](NC(=O)OCc1ccccc1)C(=O)N[C@H](CO)C[C@@H]2CCNC2=O"                                                                                                                         
JX6 SMILES           CACTVS               3.385 "CC(C)(C)C[CH](NC(=O)OCc1ccccc1)C(=O)N[CH](CO)C[CH]2CCNC2=O"                                                                                                                             
JX6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)CO)NC(=O)OCc2ccccc2"                                                                                                                       
JX6 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)(C)CC(C(=O)NC(CC1CCNC1=O)CO)NC(=O)OCc2ccccc2"                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JX6 "SYSTEMATIC NAME" ACDLabs              12.01 "N~2~-[(benzyloxy)carbonyl]-N-{(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-methyl-L-leucinamide"                                                      
JX6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[(2~{S})-4,4-dimethyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JX6 "Create component" 2023-08-09 RCSB 
JX6 "Initial release"  2024-08-14 RCSB 
JX6 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            JX6 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C8 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
