data_JW6
# 
_chem_comp.id                                    JW6 
_chem_comp.name                                  "1-[(8R,15S,18S)-15-(4-azanylbutyl)-18-[(3-azanyl-4-oxidanyl-phenyl)methyl]-4,7,14,17,20-pentakis(oxidanylidene)-3,6,13,16,19-pentazabicyclo[20.3.1]hexacosa-1(25),22(26),23-trien-8-yl]guanidine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C33 H48 N10 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-11 
_chem_comp.pdbx_modified_date                    2023-03-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        680.798 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JW6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZQF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JW6 N1  N1  N 0 1 N N N 7.277  -10.466 5.140  -7.474 -4.852 -0.455 N1  JW6 1  
JW6 C7  C1  C 0 1 N N N -0.490 -14.698 3.744  1.689  -2.467 -1.237 C7  JW6 2  
JW6 C8  C2  C 0 1 N N S -1.244 -13.655 2.925  2.888  -1.597 -1.516 C8  JW6 3  
JW6 N2  N2  N 0 1 N N N 5.955  -10.677 3.184  -6.356 -3.039 -1.373 N2  JW6 4  
JW6 C9  C3  C 0 1 N N N -1.948 -14.317 1.735  4.146  -2.268 -0.962 C9  JW6 5  
JW6 O1  O1  O 0 1 N N N 2.538  -4.928  -0.555 5.609  -0.990 3.303  O1  JW6 6  
JW6 C1  C4  C 0 1 N N R 4.447  -12.754 4.562  -4.121 -3.381 0.215  C1  JW6 7  
JW6 O5  O2  O 0 1 N N N 0.156  -15.588 3.178  0.609  -2.205 -1.724 O5  JW6 8  
JW6 C5  C5  C 0 1 N N N 1.520  -14.585 6.420  -0.545 -3.512 0.095  C5  JW6 9  
JW6 C6  C6  C 0 1 N N N 0.262  -15.338 6.000  0.653  -4.405 -0.234 C6  JW6 10 
JW6 N3  N3  N 0 1 N N N -0.545 -14.546 5.070  1.843  -3.555 -0.432 N3  JW6 11 
JW6 C4  C7  C 0 1 N N N 2.400  -14.164 5.233  -1.832 -4.169 -0.405 C4  JW6 12 
JW6 O4  O3  O 0 1 N N N -1.186 -10.936 3.615  2.392  0.619  -2.889 O4  JW6 13 
JW6 C3  C8  C 0 1 N N N 3.590  -13.339 5.688  -2.886 -4.139 0.705  C3  JW6 14 
JW6 O3  O4  O 0 1 N N N 3.278  -10.829 2.022  0.800  4.004  0.023  O3  JW6 15 
JW6 C2  C9  C 0 1 N N N 6.199  -11.046 4.402  -6.374 -4.031 -0.527 C2  JW6 16 
JW6 N4  N4  N 0 1 N N N -5.805 -11.062 0.997  9.073  -1.944 -0.659 N4  JW6 17 
JW6 N   N5  N 0 1 N N N 5.536  -11.990 5.148  -5.293 -4.256 0.292  N   JW6 18 
JW6 C   C10 C 0 1 N N N 4.961  -13.883 3.672  -4.342 -2.166 1.082  C   JW6 19 
JW6 O   O5  O 0 1 N N N 4.324  -14.233 2.684  -3.938 -2.136 2.225  O   JW6 20 
JW6 C10 C11 C 0 1 N N N -2.679 -13.314 0.827  5.376  -1.448 -1.353 C10 JW6 21 
JW6 C11 C12 C 0 1 N N N -3.905 -12.623 1.463  6.635  -2.119 -0.799 C11 JW6 22 
JW6 C12 C13 C 0 1 N N N -4.480 -11.525 0.566  7.865  -1.299 -1.191 C12 JW6 23 
JW6 C13 C14 C 0 1 N N N -0.382 -11.370 2.783  2.469  0.774  -1.689 C13 JW6 24 
JW6 C14 C15 C 0 1 N N S 0.489  -10.410 1.971  2.311  2.143  -1.079 C14 JW6 25 
JW6 C15 C16 C 0 1 N N N -0.437 -9.403  1.262  1.841  2.008  0.371  C15 JW6 26 
JW6 C16 C17 C 0 1 Y N N 0.301  -8.208  0.715  2.850  1.209  1.154  C16 JW6 27 
JW6 C17 C18 C 0 1 Y N N 0.159  -6.963  1.320  4.151  1.663  1.268  C17 JW6 28 
JW6 C18 C19 C 0 1 Y N N 0.902  -5.856  0.900  5.081  0.929  1.988  C18 JW6 29 
JW6 C19 C20 C 0 1 Y N N 1.810  -6.010  -0.162 4.701  -0.266 2.595  C19 JW6 30 
JW6 C20 C21 C 0 1 Y N N 1.939  -7.247  -0.783 3.396  -0.714 2.477  C20 JW6 31 
JW6 C21 C22 C 0 1 Y N N 1.188  -8.329  -0.351 2.472  0.026  1.762  C21 JW6 32 
JW6 C22 C23 C 0 1 N N N 2.630  -11.160 1.031  0.595  3.830  -1.160 C22 JW6 33 
JW6 C23 C24 C 0 1 N N N 3.303  -11.633 -0.244 -0.449 4.638  -1.889 C23 JW6 34 
JW6 C24 C25 C 0 1 Y N N 4.802  -11.423 -0.242 -1.577 4.951  -0.938 C24 JW6 35 
JW6 C25 C26 C 0 1 Y N N 5.658  -12.478 0.052  -2.708 4.159  -0.917 C25 JW6 36 
JW6 C26 C27 C 0 1 Y N N 7.042  -12.316 0.041  -3.735 4.443  -0.035 C26 JW6 37 
JW6 C27 C28 C 0 1 N N N 7.939  -13.476 0.398  -4.970 3.579  -0.008 C27 JW6 38 
JW6 C28 C29 C 0 1 N N N 7.085  -15.237 1.847  -5.427 1.287  0.603  C28 JW6 39 
JW6 C29 C30 C 0 1 N N N 6.593  -15.590 3.240  -5.197 0.060  1.449  C29 JW6 40 
JW6 C30 C31 C 0 1 Y N N 7.569  -11.069 -0.270 -3.630 5.523  0.822  C30 JW6 41 
JW6 C31 C32 C 0 1 Y N N 6.731  -10.010 -0.562 -2.502 6.322  0.793  C31 JW6 42 
JW6 C32 C33 C 0 1 Y N N 5.356  -10.186 -0.549 -1.475 6.034  -0.086 C32 JW6 43 
JW6 N5  N6  N 0 1 N N N -0.268 -12.669 2.485  2.701  -0.287 -0.865 N5  JW6 44 
JW6 N6  N7  N 0 1 N N N 0.743  -4.617  1.511  6.399  1.387  2.104  N6  JW6 45 
JW6 N7  N8  N 0 1 N N N 1.296  -11.107 0.983  1.306  2.898  -1.861 N7  JW6 46 
JW6 N8  N9  N 0 1 N N N 7.576  -14.012 1.703  -4.724 2.421  0.875  N8  JW6 47 
JW6 N9  N10 N 0 1 N N N 6.109  -14.465 4.019  -5.010 -1.100 0.546  N9  JW6 48 
JW6 O2  O6  O 0 1 N N N 7.037  -16.055 0.921  -6.227 1.264  -0.308 O2  JW6 49 
JW6 H1  H1  H 0 1 N N N 7.460  -10.765 6.077  -8.237 -4.693 -1.033 H1  JW6 50 
JW6 H2  H2  H 0 1 N N N 7.849  -9.761  4.720  -7.486 -5.593 0.171  H2  JW6 51 
JW6 H3  H3  H 0 1 N N N -2.000 -13.176 3.564  2.993  -1.457 -2.592 H3  JW6 52 
JW6 H4  H4  H 0 1 N N N 5.181  -11.172 2.790  -5.579 -2.459 -1.424 H4  JW6 53 
JW6 H5  H5  H 0 1 N N N -2.683 -15.039 2.121  4.078  -2.326 0.125  H5  JW6 54 
JW6 H6  H6  H 0 1 N N N -1.194 -14.847 1.134  4.233  -3.273 -1.375 H6  JW6 55 
JW6 H7  H7  H 0 1 N N N 2.312  -4.180  -0.014 5.654  -0.758 4.240  H7  JW6 56 
JW6 H8  H8  H 0 1 N N N 3.817  -12.088 3.954  -3.969 -3.067 -0.818 H8  JW6 57 
JW6 H9  H9  H 0 1 N N N 2.112  -15.235 7.081  -0.606 -3.370 1.174  H9  JW6 58 
JW6 H10 H10 H 0 1 N N N 1.219  -13.681 6.970  -0.420 -2.545 -0.392 H10 JW6 59 
JW6 H11 H11 H 0 1 N N N -0.338 -15.561 6.895  0.830  -5.096 0.590  H11 JW6 60 
JW6 H12 H12 H 0 1 N N N 0.554  -16.279 5.510  0.449  -4.967 -1.146 H12 JW6 61 
JW6 H13 H13 H 0 1 N N N -1.167 -13.859 5.445  2.692  -3.761 -0.011 H13 JW6 62 
JW6 H14 H14 H 0 1 N N N 1.796  -13.566 4.535  -2.204 -3.626 -1.273 H14 JW6 63 
JW6 H15 H15 H 0 1 N N N 2.765  -15.066 4.721  -1.628 -5.203 -0.683 H15 JW6 64 
JW6 H16 H16 H 0 1 N N N 4.233  -13.982 6.306  -2.476 -3.638 1.581  H16 JW6 65 
JW6 H17 H17 H 0 1 N N N 3.212  -12.504 6.297  -3.166 -5.159 0.968  H17 JW6 66 
JW6 H18 H18 H 0 1 N N N -6.128 -10.348 0.375  9.900  -1.420 -0.905 H18 JW6 67 
JW6 H19 H19 H 0 1 N N N -6.446 -11.829 0.985  9.007  -2.068 0.340  H19 JW6 68 
JW6 H21 H21 H 0 1 N N N 5.804  -12.152 6.098  -5.307 -4.994 0.921  H21 JW6 69 
JW6 H22 H22 H 0 1 N N N -3.019 -13.852 -0.070 5.444  -1.390 -2.440 H22 JW6 70 
JW6 H23 H23 H 0 1 N N N -1.961 -12.533 0.536  5.289  -0.443 -0.940 H23 JW6 71 
JW6 H24 H24 H 0 1 N N N -3.602 -12.175 2.421  6.567  -2.178 0.287  H24 JW6 72 
JW6 H25 H25 H 0 1 N N N -4.684 -13.379 1.642  6.722  -3.124 -1.212 H25 JW6 73 
JW6 H26 H26 H 0 1 N N N -4.563 -11.918 -0.458 7.778  -0.294 -0.778 H26 JW6 74 
JW6 H27 H27 H 0 1 N N N -3.790 -10.668 0.576  7.932  -1.241 -2.277 H27 JW6 75 
JW6 H28 H28 H 0 1 N N N 1.143  -9.858  2.662  3.265  2.668  -1.106 H28 JW6 76 
JW6 H29 H29 H 0 1 N N N -1.189 -9.050  1.983  1.739  2.999  0.814  H29 JW6 77 
JW6 H30 H30 H 0 1 N N N -0.940 -9.916  0.429  0.877  1.499  0.395  H30 JW6 78 
JW6 H31 H31 H 0 1 N N N -0.542 -6.849  2.134  4.442  2.590  0.795  H31 JW6 79 
JW6 H32 H32 H 0 1 N N N 2.628  -7.366  -1.606 3.097  -1.638 2.950  H32 JW6 80 
JW6 H33 H33 H 0 1 N N N 1.293  -9.281  -0.850 1.455  -0.325 1.671  H33 JW6 81 
JW6 H34 H34 H 0 1 N N N 2.874  -11.079 -1.092 -0.007 5.566  -2.249 H34 JW6 82 
JW6 H35 H35 H 0 1 N N N 3.101  -12.707 -0.368 -0.832 4.063  -2.732 H35 JW6 83 
JW6 H36 H36 H 0 1 N N N 5.241  -13.444 0.294  -2.791 3.318  -1.590 H36 JW6 84 
JW6 H37 H37 H 0 1 N N N 7.832  -14.265 -0.361 -5.811 4.157  0.374  H37 JW6 85 
JW6 H38 H38 H 0 1 N N N 8.984  -13.132 0.425  -5.192 3.229  -1.016 H38 JW6 86 
JW6 H39 H39 H 0 1 N N N 5.772  -16.315 3.139  -4.305 0.197  2.060  H39 JW6 87 
JW6 H40 H40 H 0 1 N N N 7.426  -16.054 3.789  -6.060 -0.110 2.092  H40 JW6 88 
JW6 H41 H41 H 0 1 N N N 8.639  -10.926 -0.284 -4.429 5.743  1.514  H41 JW6 89 
JW6 H42 H42 H 0 1 N N N 7.148  -9.043  -0.801 -2.423 7.170  1.456  H42 JW6 90 
JW6 H43 H43 H 0 1 N N N 4.709  -9.353  -0.780 -0.592 6.656  -0.106 H43 JW6 91 
JW6 H44 H44 H 0 1 N N N 0.514  -12.973 1.941  2.741  -0.185 0.099  H44 JW6 92 
JW6 H45 H45 H 0 1 N N N 0.063  -4.689  2.241  6.633  2.274  1.790  H45 JW6 93 
JW6 H46 H46 H 0 1 N N N 1.617  -4.322  1.898  7.077  0.817  2.499  H46 JW6 94 
JW6 H47 H47 H 0 1 N N N 0.829  -11.570 0.230  1.162  2.741  -2.808 H47 JW6 95 
JW6 H48 H48 H 0 1 N N N 7.700  -13.440 2.514  -4.093 2.466  1.611  H48 JW6 96 
JW6 H49 H49 H 0 1 N N N 6.629  -14.131 4.805  -5.340 -1.102 -0.366 H49 JW6 97 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JW6 C20 C21 DOUB Y N 1  
JW6 C20 C19 SING Y N 2  
JW6 C31 C32 DOUB Y N 3  
JW6 C31 C30 SING Y N 4  
JW6 O1  C19 SING N N 5  
JW6 C32 C24 SING Y N 6  
JW6 C21 C16 SING Y N 7  
JW6 C30 C26 DOUB Y N 8  
JW6 C23 C24 SING N N 9  
JW6 C23 C22 SING N N 10 
JW6 C24 C25 DOUB Y N 11 
JW6 C19 C18 DOUB Y N 12 
JW6 C26 C25 SING Y N 13 
JW6 C26 C27 SING N N 14 
JW6 C27 N8  SING N N 15 
JW6 C12 N4  SING N N 16 
JW6 C12 C11 SING N N 17 
JW6 C16 C15 SING N N 18 
JW6 C16 C17 DOUB Y N 19 
JW6 C10 C11 SING N N 20 
JW6 C10 C9  SING N N 21 
JW6 C18 C17 SING Y N 22 
JW6 C18 N6  SING N N 23 
JW6 O2  C28 DOUB N N 24 
JW6 N7  C22 SING N N 25 
JW6 N7  C14 SING N N 26 
JW6 C22 O3  DOUB N N 27 
JW6 C15 C14 SING N N 28 
JW6 N8  C28 SING N N 29 
JW6 C9  C8  SING N N 30 
JW6 C28 C29 SING N N 31 
JW6 C14 C13 SING N N 32 
JW6 N5  C13 SING N N 33 
JW6 N5  C8  SING N N 34 
JW6 O   C   DOUB N N 35 
JW6 C13 O4  DOUB N N 36 
JW6 C8  C7  SING N N 37 
JW6 O5  C7  DOUB N N 38 
JW6 N2  C2  DOUB N N 39 
JW6 C29 N9  SING N N 40 
JW6 C   N9  SING N N 41 
JW6 C   C1  SING N N 42 
JW6 C7  N3  SING N N 43 
JW6 C2  N1  SING N N 44 
JW6 C2  N   SING N N 45 
JW6 C1  N   SING N N 46 
JW6 C1  C3  SING N N 47 
JW6 N3  C6  SING N N 48 
JW6 C4  C3  SING N N 49 
JW6 C4  C5  SING N N 50 
JW6 C6  C5  SING N N 51 
JW6 N1  H1  SING N N 52 
JW6 N1  H2  SING N N 53 
JW6 C8  H3  SING N N 54 
JW6 N2  H4  SING N N 55 
JW6 C9  H5  SING N N 56 
JW6 C9  H6  SING N N 57 
JW6 O1  H7  SING N N 58 
JW6 C1  H8  SING N N 59 
JW6 C5  H9  SING N N 60 
JW6 C5  H10 SING N N 61 
JW6 C6  H11 SING N N 62 
JW6 C6  H12 SING N N 63 
JW6 N3  H13 SING N N 64 
JW6 C4  H14 SING N N 65 
JW6 C4  H15 SING N N 66 
JW6 C3  H16 SING N N 67 
JW6 C3  H17 SING N N 68 
JW6 N4  H18 SING N N 69 
JW6 N4  H19 SING N N 70 
JW6 N   H21 SING N N 71 
JW6 C10 H22 SING N N 72 
JW6 C10 H23 SING N N 73 
JW6 C11 H24 SING N N 74 
JW6 C11 H25 SING N N 75 
JW6 C12 H26 SING N N 76 
JW6 C12 H27 SING N N 77 
JW6 C14 H28 SING N N 78 
JW6 C15 H29 SING N N 79 
JW6 C15 H30 SING N N 80 
JW6 C17 H31 SING N N 81 
JW6 C20 H32 SING N N 82 
JW6 C21 H33 SING N N 83 
JW6 C23 H34 SING N N 84 
JW6 C23 H35 SING N N 85 
JW6 C25 H36 SING N N 86 
JW6 C27 H37 SING N N 87 
JW6 C27 H38 SING N N 88 
JW6 C29 H39 SING N N 89 
JW6 C29 H40 SING N N 90 
JW6 C30 H41 SING N N 91 
JW6 C31 H42 SING N N 92 
JW6 C32 H43 SING N N 93 
JW6 N5  H44 SING N N 94 
JW6 N6  H45 SING N N 95 
JW6 N6  H46 SING N N 96 
JW6 N7  H47 SING N N 97 
JW6 N8  H48 SING N N 98 
JW6 N9  H49 SING N N 99 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JW6 InChI            InChI                1.06  "InChI=1S/C33H48N10O6/c34-12-3-1-8-24-30(47)38-13-4-2-9-25(43-33(36)37)31(48)40-19-29(46)39-18-22-7-5-6-20(14-22)17-28(45)41-26(32(49)42-24)16-21-10-11-27(44)23(35)15-21/h5-7,10-11,14-15,24-26,44H,1-4,8-9,12-13,16-19,34-35H2,(H,38,47)(H,39,46)(H,40,48)(H,41,45)(H,42,49)(H4,36,37,43)/t24-,25+,26-/m0/s1" 
JW6 InChIKey         InChI                1.06  RKZWERWMSWLYFI-NXCFDTQHSA-N                                                                                                                                                                                                                                                                                     
JW6 SMILES_CANONICAL CACTVS               3.385 "NCCCC[C@@H]1NC(=O)[C@H](Cc2ccc(O)c(N)c2)NC(=O)Cc3cccc(CNC(=O)CNC(=O)[C@@H](CCCCNC1=O)NC(N)=N)c3"                                                                                                                                                                                                               
JW6 SMILES           CACTVS               3.385 "NCCCC[CH]1NC(=O)[CH](Cc2ccc(O)c(N)c2)NC(=O)Cc3cccc(CNC(=O)CNC(=O)[CH](CCCCNC1=O)NC(N)=N)c3"                                                                                                                                                                                                                    
JW6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\N[C@@H]1CCCCNC(=O)[C@@H](NC(=O)[C@@H](NC(=O)Cc2cccc(c2)CNC(=O)CNC1=O)Cc3ccc(c(c3)N)O)CCCCN"                                                                                                                                                                                                        
JW6 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2cc(c1)CNC(=O)CNC(=O)C(CCCCNC(=O)C(NC(=O)C(NC(=O)C2)Cc3ccc(c(c3)N)O)CCCCN)NC(=N)N"                                                                                                                                                                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           JW6 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1-[(8~{R},15~{S},18~{S})-15-(4-azanylbutyl)-18-[(3-azanyl-4-oxidanyl-phenyl)methyl]-4,7,14,17,20-pentakis(oxidanylidene)-3,6,13,16,19-pentazabicyclo[20.3.1]hexacosa-1(25),22(26),23-trien-8-yl]guanidine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JW6 "Create component"  2022-05-11 PDBE 
JW6 "Modify descriptor" 2022-08-22 RCSB 
JW6 "Initial release"   2023-03-22 RCSB 
# 
