data_JL6
# 
_chem_comp.id                                    JL6 
_chem_comp.name                                  "6-cyclopropyl-N-[(3R)-1-(pyridin-2-yl)pyrrolidin-3-yl]-3-[(pyrimidin-5-yl)amino]pyridine-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H23 N7 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-02-01 
_chem_comp.pdbx_modified_date                    2022-10-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        401.464 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JL6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5SI2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JL6 C5  C1  C 0 1 Y N N 29.282 2.932 -11.641 3.044  0.740  0.590  C5  JL6 1  
JL6 C6  C2  C 0 1 Y N N 29.662 2.774 -14.341 1.806  3.001  -0.310 C6  JL6 2  
JL6 C7  C3  C 0 1 N N N 29.634 2.577 -15.846 1.115  4.245  -0.804 C7  JL6 3  
JL6 C13 C4  C 0 1 N N N 23.670 2.776 -12.128 -2.808 -0.913 1.371  C13 JL6 4  
JL6 C15 C5  C 0 1 N N N 22.332 1.069 -13.353 -2.875 -1.943 -0.756 C15 JL6 5  
JL6 C20 C6  C 0 1 Y N N 30.563 3.244 -12.146 3.827  1.834  0.221  C20 JL6 6  
JL6 C21 C7  C 0 1 Y N N 29.831 3.056 -9.270  3.783  -1.523 0.195  C21 JL6 7  
JL6 C22 C8  C 0 1 Y N N 30.758 3.175 -13.526 3.192  2.975  -0.234 C22 JL6 8  
JL6 C24 C9  C 0 1 Y N N 31.575 3.273 -7.288  4.055  -3.622 -1.443 C24 JL6 9  
JL6 C26 C10 C 0 1 Y N N 31.188 3.141 -9.587  3.451  -1.425 -1.154 C26 JL6 10 
JL6 C28 C11 C 0 1 Y N N 20.163 4.660 -10.961 -5.872 1.227  0.258  C28 JL6 11 
JL6 C1  C12 C 0 1 Y N N 28.247 2.592 -12.510 1.650  0.838  0.481  C1  JL6 12 
JL6 N2  N1  N 0 1 Y N N 28.485 2.490 -13.813 1.088  1.958  0.038  N2  JL6 13 
JL6 C3  C13 C 0 1 N N N 26.870 2.284 -12.046 0.801  -0.310 0.860  C3  JL6 14 
JL6 N4  N2  N 0 1 N N N 22.332 2.272 -12.536 -3.709 -1.609 0.427  N4  JL6 15 
JL6 N8  N3  N 0 1 N N N 25.942 2.032 -13.000 -0.534 -0.247 0.686  N8  JL6 16 
JL6 C9  C14 C 0 1 Y N N 21.183 2.978 -12.240 -4.779 -0.797 0.069  C9  JL6 17 
JL6 N10 N4  N 0 1 N N N 28.911 2.970 -10.306 3.636  -0.429 1.052  N10 JL6 18 
JL6 C11 C15 C 0 1 N N N 28.195 2.298 -16.321 0.835  5.351  0.215  C11 JL6 19 
JL6 C12 C16 C 0 1 N N N 28.927 3.563 -16.789 1.929  5.540  -0.837 C12 JL6 20 
JL6 N14 N5  N 0 1 Y N N 21.239 3.922 -11.291 -4.873 0.424  0.572  N14 JL6 21 
JL6 C16 C17 C 0 1 N N R 24.561 1.658 -12.693 -1.376 -1.386 1.061  C16 JL6 22 
JL6 O17 O1  O 0 1 N N N 26.574 2.328 -10.869 1.307  -1.311 1.329  O17 JL6 23 
JL6 N18 N6  N 0 1 Y N N 30.287 3.198 -6.946  4.381  -3.756 -0.172 N18 JL6 24 
JL6 N19 N7  N 0 1 Y N N 32.019 3.249 -8.556  3.600  -2.486 -1.930 N19 JL6 25 
JL6 C23 C18 C 0 1 N N N 23.771 1.139 -13.942 -1.521 -2.361 -0.129 C23 JL6 26 
JL6 C25 C19 C 0 1 Y N N 29.389 3.086 -7.925  4.261  -2.743 0.669  C25 JL6 27 
JL6 C27 C20 C 0 1 Y N N 20.024 2.742 -12.975 -5.740 -1.274 -0.816 C27 JL6 28 
JL6 C29 C21 C 0 1 Y N N 18.907 3.510 -12.645 -6.797 -0.454 -1.168 C29 JL6 29 
JL6 C30 C22 C 0 1 Y N N 18.951 4.483 -11.627 -6.862 0.817  -0.613 C30 JL6 30 
JL6 H1  H1  H 0 1 N N N 30.428 1.955 -16.285 0.380  4.092  -1.595 H1  JL6 31 
JL6 H2  H2  H 0 1 N N N 23.897 3.750 -12.587 -2.882 0.166  1.228  H2  JL6 32 
JL6 H3  H3  H 0 1 N N N 23.760 2.856 -11.035 -3.070 -1.170 2.397  H3  JL6 33 
JL6 H4  H4  H 0 1 N N N 22.183 0.164 -12.746 -3.313 -2.771 -1.314 H4  JL6 34 
JL6 H5  H5  H 0 1 N N N 21.566 1.112 -14.141 -2.748 -1.072 -1.399 H5  JL6 35 
JL6 H6  H6  H 0 1 N N N 31.368 3.528 -11.484 4.904  1.791  0.288  H6  JL6 36 
JL6 H7  H7  H 0 1 N N N 31.715 3.419 -13.964 3.769  3.839  -0.528 H7  JL6 37 
JL6 H8  H8  H 0 1 N N N 32.305 3.358 -6.497  4.165  -4.469 -2.104 H8  JL6 38 
JL6 H9  H9  H 0 1 N N N 31.541 3.120 -10.608 3.077  -0.497 -1.560 H9  JL6 39 
JL6 H10 H10 H 0 1 N N N 20.239 5.395 -10.174 -5.919 2.214  0.692  H10 JL6 40 
JL6 H11 H11 H 0 1 N N N 26.214 2.105 -13.960 -0.937 0.552  0.312  H11 JL6 41 
JL6 H12 H12 H 0 1 N N N 27.938 2.934 -10.079 3.947  -0.485 1.969  H12 JL6 42 
JL6 H13 H13 H 0 1 N N N 27.999 1.481 -17.031 -0.083 5.925  0.096  H13 JL6 43 
JL6 H14 H14 H 0 1 N N N 27.357 2.378 -15.613 1.151  5.179  1.244  H14 JL6 44 
JL6 H15 H15 H 0 1 N N N 28.612 4.549 -16.417 2.965  5.492  -0.502 H15 JL6 45 
JL6 H16 H16 H 0 1 N N N 29.254 3.653 -17.835 1.730  6.239  -1.650 H16 JL6 46 
JL6 H17 H17 H 0 1 N N N 24.577 0.842 -11.956 -0.952 -1.900 1.924  H17 JL6 47 
JL6 H18 H18 H 0 1 N N N 24.127 0.150 -14.266 -1.561 -3.393 0.221  H18 JL6 48 
JL6 H19 H19 H 0 1 N N N 23.832 1.844 -14.784 -0.708 -2.225 -0.841 H19 JL6 49 
JL6 H20 H20 H 0 1 N N N 28.336 3.019 -7.695  4.530  -2.859 1.709  H20 JL6 50 
JL6 H21 H21 H 0 1 N N N 19.991 2.002 -13.761 -5.661 -2.270 -1.225 H21 JL6 51 
JL6 H22 H22 H 0 1 N N N 17.984 3.355 -13.184 -7.558 -0.797 -1.852 H22 JL6 52 
JL6 H23 H23 H 0 1 N N N 18.080 5.069 -11.373 -7.679 1.479  -0.861 H23 JL6 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JL6 C1  N2  DOUB Y N 1  
JL6 C1  C5  SING Y N 2  
JL6 C1  C3  SING N N 3  
JL6 N2  C6  SING Y N 4  
JL6 C3  O17 DOUB N N 5  
JL6 C3  N8  SING N N 6  
JL6 N4  C13 SING N N 7  
JL6 N4  C15 SING N N 8  
JL6 N4  C9  SING N N 9  
JL6 C5  N10 SING N N 10 
JL6 C5  C20 DOUB Y N 11 
JL6 C6  C7  SING N N 12 
JL6 C6  C22 DOUB Y N 13 
JL6 C7  C11 SING N N 14 
JL6 C7  C12 SING N N 15 
JL6 N8  C16 SING N N 16 
JL6 C9  C27 DOUB Y N 17 
JL6 C9  N14 SING Y N 18 
JL6 N10 C21 SING N N 19 
JL6 C11 C12 SING N N 20 
JL6 C13 C16 SING N N 21 
JL6 N14 C28 DOUB Y N 22 
JL6 C15 C23 SING N N 23 
JL6 C16 C23 SING N N 24 
JL6 N18 C24 DOUB Y N 25 
JL6 N18 C25 SING Y N 26 
JL6 N19 C26 DOUB Y N 27 
JL6 N19 C24 SING Y N 28 
JL6 C20 C22 SING Y N 29 
JL6 C21 C25 DOUB Y N 30 
JL6 C21 C26 SING Y N 31 
JL6 C27 C29 SING Y N 32 
JL6 C28 C30 SING Y N 33 
JL6 C29 C30 DOUB Y N 34 
JL6 C7  H1  SING N N 35 
JL6 C13 H2  SING N N 36 
JL6 C13 H3  SING N N 37 
JL6 C15 H4  SING N N 38 
JL6 C15 H5  SING N N 39 
JL6 C20 H6  SING N N 40 
JL6 C22 H7  SING N N 41 
JL6 C24 H8  SING N N 42 
JL6 C26 H9  SING N N 43 
JL6 C28 H10 SING N N 44 
JL6 N8  H11 SING N N 45 
JL6 N10 H12 SING N N 46 
JL6 C11 H13 SING N N 47 
JL6 C11 H14 SING N N 48 
JL6 C12 H15 SING N N 49 
JL6 C12 H16 SING N N 50 
JL6 C16 H17 SING N N 51 
JL6 C23 H18 SING N N 52 
JL6 C23 H19 SING N N 53 
JL6 C25 H20 SING N N 54 
JL6 C27 H21 SING N N 55 
JL6 C29 H22 SING N N 56 
JL6 C30 H23 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JL6 SMILES           ACDLabs              12.01 "O=C(NC1CCN(C1)c1ncccc1)c1nc(ccc1Nc1cncnc1)C1CC1"                                                                                                                                   
JL6 InChI            InChI                1.03  "InChI=1S/C22H23N7O/c30-22(27-16-8-10-29(13-16)20-3-1-2-9-25-20)21-19(26-17-11-23-14-24-12-17)7-6-18(28-21)15-4-5-15/h1-3,6-7,9,11-12,14-16,26H,4-5,8,10,13H2,(H,27,30)/t16-/m1/s1" 
JL6 InChIKey         InChI                1.03  MBCVUFONUVANNW-MRXNPFEDSA-N                                                                                                                                                         
JL6 SMILES_CANONICAL CACTVS               3.385 "O=C(N[C@@H]1CCN(C1)c2ccccn2)c3nc(ccc3Nc4cncnc4)C5CC5"                                                                                                                              
JL6 SMILES           CACTVS               3.385 "O=C(N[CH]1CCN(C1)c2ccccn2)c3nc(ccc3Nc4cncnc4)C5CC5"                                                                                                                                
JL6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccnc(c1)N2CC[C@H](C2)NC(=O)c3c(ccc(n3)C4CC4)Nc5cncnc5"                                                                                                                           
JL6 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccnc(c1)N2CCC(C2)NC(=O)c3c(ccc(n3)C4CC4)Nc5cncnc5"                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JL6 "SYSTEMATIC NAME" ACDLabs              12.01 "6-cyclopropyl-N-[(3R)-1-(pyridin-2-yl)pyrrolidin-3-yl]-3-[(pyrimidin-5-yl)amino]pyridine-2-carboxamide"   
JL6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-cyclopropyl-~{N}-[(3~{R})-1-pyridin-2-ylpyrrolidin-3-yl]-3-(pyrimidin-5-ylamino)pyridine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JL6 "Create component" 2022-02-01 RCSB 
JL6 "Initial release"  2022-10-12 RCSB 
# 
