data_HR6
# 
_chem_comp.id                                    HR6 
_chem_comp.name                                  "(2S,4aR,6R,7R,7aS)-6-[6-amino-8-(benzylsulfanyl)-9H-purin-9-yl]-2-sulfanyltetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinin-7-ol 2-oxide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H18 N5 O5 P S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-09-12 
_chem_comp.pdbx_modified_date                    2014-08-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        467.459 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     HR6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4MGZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
HR6 S1P   S1P   S 0 1 N N N 8.619  -18.995 -61.614 -4.020 0.521  -1.336 S1P   HR6 1  
HR6 P     P     P 0 1 N N S 7.708  -17.776 -62.825 -3.263 2.186  -0.265 P     HR6 2  
HR6 O2P   O2P   O 0 1 N N N 8.745  -17.215 -63.913 -4.163 3.348  -0.434 O2P   HR6 3  
HR6 "O5'" "O5'" O 0 1 N N N 6.471  -18.559 -63.511 -3.122 1.816  1.310  "O5'" HR6 4  
HR6 "C5'" "C5'" C 0 1 N N N 5.223  -18.733 -62.827 -1.932 1.150  1.797  "C5'" HR6 5  
HR6 "O3'" "O3'" O 0 1 N N N 7.024  -16.560 -62.013 -1.767 2.559  -0.799 "O3'" HR6 6  
HR6 "C3'" "C3'" C 0 1 N N S 5.850  -16.910 -61.296 -0.686 1.775  -0.282 "C3'" HR6 7  
HR6 "C2'" "C2'" C 0 1 N N R 5.123  -15.830 -60.527 0.706  2.380  -0.545 "C2'" HR6 8  
HR6 "O2'" "O2'" O 0 1 N N N 5.157  -14.592 -61.237 0.650  3.808  -0.562 "O2'" HR6 9  
HR6 "C4'" "C4'" C 0 1 N N R 4.815  -17.368 -62.295 -0.746 1.926  1.262  "C4'" HR6 10 
HR6 "O4'" "O4'" O 0 1 N N N 3.586  -17.322 -61.571 0.541  1.542  1.714  "O4'" HR6 11 
HR6 "C1'" "C1'" C 0 1 N N R 3.698  -16.365 -60.504 1.501  1.868  0.686  "C1'" HR6 12 
HR6 N9    N9    N 0 1 Y N N 3.380  -17.060 -59.223 2.266  0.673  0.323  N9    HR6 13 
HR6 C4    C4    C 0 1 Y N N 3.780  -18.280 -58.832 3.624  0.608  0.109  C4    HR6 14 
HR6 N3    N3    N 0 1 Y N N 4.558  -19.247 -59.379 4.619  1.488  0.146  N3    HR6 15 
HR6 C2    C2    C 0 1 Y N N 4.801  -20.407 -58.740 5.855  1.114  -0.114 C2    HR6 16 
HR6 N1    N1    N 0 1 Y N N 4.299  -20.701 -57.528 6.168  -0.131 -0.421 N1    HR6 17 
HR6 C6    C6    C 0 1 Y N N 3.505  -19.834 -56.859 5.239  -1.079 -0.482 C6    HR6 18 
HR6 N6    N6    N 0 1 N N N 2.965  -20.189 -55.522 5.578  -2.384 -0.804 N6    HR6 19 
HR6 C5    C5    C 0 1 Y N N 3.192  -18.528 -57.494 3.906  -0.730 -0.212 C5    HR6 20 
HR6 N7    N7    N 0 1 Y N N 2.468  -17.440 -57.160 2.732  -1.409 -0.181 N7    HR6 21 
HR6 C8    C8    C 0 1 Y N N 2.618  -16.613 -58.217 1.763  -0.587 0.139  C8    HR6 22 
HR6 S2    S2    S 0 1 N N N 1.854  -15.041 -58.268 0.067  -1.035 0.304  S2    HR6 23 
HR6 C9    C9    C 0 1 N N N 1.916  -14.214 -56.704 0.170  -2.802 -0.076 C9    HR6 24 
HR6 C10   C10   C 0 1 Y N N 1.096  -12.929 -56.672 -1.204 -3.414 0.006  C10   HR6 25 
HR6 C15   C15   C 0 1 Y N N 1.733  -11.680 -56.752 -1.661 -3.930 1.204  C15   HR6 26 
HR6 C14   C14   C 0 1 Y N N 0.980  -10.498 -56.718 -2.922 -4.492 1.280  C14   HR6 27 
HR6 C11   C11   C 0 1 Y N N -0.302 -12.976 -56.546 -2.011 -3.456 -1.116 C11   HR6 28 
HR6 C12   C12   C 0 1 Y N N -1.054 -11.791 -56.513 -3.271 -4.018 -1.041 C12   HR6 29 
HR6 C13   C13   C 0 1 Y N N -0.412 -10.552 -56.599 -3.726 -4.538 0.156  C13   HR6 30 
HR6 H1    H1    H 0 1 N N N 9.834  -18.979 -62.077 -5.237 0.339  -0.791 H1    HR6 31 
HR6 H2    H2    H 0 1 N N N 4.460  -19.111 -63.523 -1.920 1.158  2.887  H2    HR6 32 
HR6 H3    H3    H 0 1 N N N 5.344  -19.442 -61.995 -1.902 0.124  1.430  H3    HR6 33 
HR6 H4    H4    H 0 1 N N N 6.067  -17.742 -60.610 -0.747 0.736  -0.606 H4    HR6 34 
HR6 H5    H5    H 0 1 N N N 5.522  -15.737 -59.506 1.131  1.995  -1.473 H5    HR6 35 
HR6 H6    H6    H 0 1 N N N 4.696  -13.928 -60.738 1.504  4.233  -0.725 H6    HR6 36 
HR6 H7    H7    H 0 1 N N N 4.787  -16.655 -63.132 -0.892 2.982  1.487  H7    HR6 37 
HR6 H8    H8    H 0 1 N N N 2.995  -15.533 -60.658 2.175  2.647  1.043  H8    HR6 38 
HR6 H9    H9    H 0 1 N N N 5.431  -21.138 -59.225 6.640  1.854  -0.076 H9    HR6 39 
HR6 H10   H10   H 0 1 N N N 3.284  -21.101 -55.265 6.502  -2.613 -0.989 H10   HR6 40 
HR6 H11   H11   H 0 1 N N N 3.282  -19.522 -54.847 4.891  -3.067 -0.846 H11   HR6 41 
HR6 H12   H12   H 0 1 N N N 1.528  -14.896 -55.932 0.567  -2.934 -1.083 H12   HR6 42 
HR6 H13   H13   H 0 1 N N N 2.964  -13.966 -56.481 0.829  -3.290 0.641  H13   HR6 43 
HR6 H14   H14   H 0 1 N N N 2.808  -11.630 -56.840 -1.033 -3.894 2.082  H14   HR6 44 
HR6 H15   H15   H 0 1 N N N 1.477  -9.542  -56.784 -3.278 -4.895 2.216  H15   HR6 45 
HR6 H16   H16   H 0 1 N N N -0.802 -13.931 -56.474 -1.656 -3.049 -2.052 H16   HR6 46 
HR6 H17   H17   H 0 1 N N N -2.129 -11.836 -56.421 -3.901 -4.050 -1.918 H17   HR6 47 
HR6 H18   H18   H 0 1 N N N -0.989 -9.640  -56.574 -4.711 -4.977 0.215  H18   HR6 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
HR6 O2P   P     DOUB N N 1  
HR6 "O5'" "C5'" SING N N 2  
HR6 "O5'" P     SING N N 3  
HR6 "C5'" "C4'" SING N N 4  
HR6 P     "O3'" SING N N 5  
HR6 P     S1P   SING N N 6  
HR6 "C4'" "O4'" SING N N 7  
HR6 "C4'" "C3'" SING N N 8  
HR6 "O3'" "C3'" SING N N 9  
HR6 "O4'" "C1'" SING N N 10 
HR6 "C3'" "C2'" SING N N 11 
HR6 "O2'" "C2'" SING N N 12 
HR6 "C2'" "C1'" SING N N 13 
HR6 "C1'" N9    SING N N 14 
HR6 N3    C4    DOUB Y N 15 
HR6 N3    C2    SING Y N 16 
HR6 N9    C4    SING Y N 17 
HR6 N9    C8    SING Y N 18 
HR6 C4    C5    SING Y N 19 
HR6 C2    N1    DOUB Y N 20 
HR6 S2    C8    SING N N 21 
HR6 S2    C9    SING N N 22 
HR6 C8    N7    DOUB Y N 23 
HR6 N1    C6    SING Y N 24 
HR6 C5    N7    SING Y N 25 
HR6 C5    C6    DOUB Y N 26 
HR6 C6    N6    SING N N 27 
HR6 C15   C14   DOUB Y N 28 
HR6 C15   C10   SING Y N 29 
HR6 C14   C13   SING Y N 30 
HR6 C9    C10   SING N N 31 
HR6 C10   C11   DOUB Y N 32 
HR6 C13   C12   DOUB Y N 33 
HR6 C11   C12   SING Y N 34 
HR6 S1P   H1    SING N N 35 
HR6 "C5'" H2    SING N N 36 
HR6 "C5'" H3    SING N N 37 
HR6 "C3'" H4    SING N N 38 
HR6 "C2'" H5    SING N N 39 
HR6 "O2'" H6    SING N N 40 
HR6 "C4'" H7    SING N N 41 
HR6 "C1'" H8    SING N N 42 
HR6 C2    H9    SING N N 43 
HR6 N6    H10   SING N N 44 
HR6 N6    H11   SING N N 45 
HR6 C9    H12   SING N N 46 
HR6 C9    H13   SING N N 47 
HR6 C15   H14   SING N N 48 
HR6 C14   H15   SING N N 49 
HR6 C11   H16   SING N N 50 
HR6 C12   H17   SING N N 51 
HR6 C13   H18   SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
HR6 SMILES           ACDLabs              12.01 "O=P4(OCC5OC(n2c3ncnc(N)c3nc2SCc1ccccc1)C(O)C5O4)S"                                                                                                                                                     
HR6 InChI            InChI                1.03  "InChI=1S/C17H18N5O5PS2/c18-14-11-15(20-8-19-14)22(17(21-11)30-7-9-4-2-1-3-5-9)16-12(23)13-10(26-16)6-25-28(24,29)27-13/h1-5,8,10,12-13,16,23H,6-7H2,(H,24,29)(H2,18,19,20)/t10-,12-,13-,16-,28+/m1/s1" 
HR6 InChIKey         InChI                1.03  CXSXQZZDDPUUEA-LXJUGQNYSA-N                                                                                                                                                                             
HR6 SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n([C@@H]3O[C@@H]4CO[P@@](S)(=O)O[C@H]4[C@H]3O)c(SCc5ccccc5)nc12"                                                                                                                               
HR6 SMILES           CACTVS               3.385 "Nc1ncnc2n([CH]3O[CH]4CO[P](S)(=O)O[CH]4[CH]3O)c(SCc5ccccc5)nc12"                                                                                                                                       
HR6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)CSc2nc3c(ncnc3n2[C@H]4[C@@H]([C@H]5[C@H](O4)CO[P@@](=O)(O5)S)O)N"                                                                                                                            
HR6 SMILES           "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)CSc2nc3c(ncnc3n2C4C(C5C(O4)COP(=O)(O5)S)O)N"                                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
HR6 "SYSTEMATIC NAME" ACDLabs              12.01 "(2S,4aR,6R,7R,7aS)-6-[6-amino-8-(benzylsulfanyl)-9H-purin-9-yl]-2-sulfanyltetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinin-7-ol 2-oxide"                       
HR6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,4aR,6R,7R,7aS)-6-[6-azanyl-8-(phenylmethylsulfanyl)purin-9-yl]-2-oxidanylidene-2-sulfanyl-4a,6,7,7a-tetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinin-7-ol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
HR6 "Create component" 2013-09-12 RCSB 
HR6 "Initial release"  2014-09-03 RCSB 
# 
