data_GY6
# 
_chem_comp.id                                    GY6 
_chem_comp.name                                  "2-[(2S)-1-(2,6-dichlorobenzene-1-carbonyl)pyrrolidin-2-yl]-5-hydroxy-6-oxo-N-(2-phenylethyl)-1,6-dihydropyrimidine-4-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H22 Cl2 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-06-12 
_chem_comp.pdbx_modified_date                    2017-12-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        501.362 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GY6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5W44 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GY6 C01 C1  C  0 1 N N N -8.409  79.991 14.914 0.670   -1.404 -1.061 C01 GY6 1  
GY6 C03 C2  C  0 1 N N N -9.858  80.321 16.873 -1.292  -1.964 0.035  C03 GY6 2  
GY6 C04 C3  C  0 1 N N N -10.249 78.913 16.800 -0.736  -3.153 0.480  C04 GY6 3  
GY6 C07 C4  C  0 1 N N N -9.699  78.066 15.765 0.646   -3.450 0.083  C07 GY6 4  
GY6 C11 C5  C  0 1 N N N -10.308 81.290 17.938 -2.685  -1.612 0.392  C11 GY6 5  
GY6 C14 C6  C  0 1 N N N -10.141 83.605 18.794 -4.593  -0.100 0.309  C14 GY6 6  
GY6 C17 C7  C  0 1 N N N -8.885  83.957 19.653 -5.055  1.102  -0.518 C17 GY6 7  
GY6 C21 C8  C  0 1 N N N -5.904  81.499 15.307 3.349   -0.468 -3.380 C21 GY6 8  
GY6 C24 C9  C  0 1 N N N -6.290  80.187 14.435 1.954   -1.117 -3.184 C24 GY6 9  
GY6 C27 C10 C  0 1 N N S -7.463  80.436 13.916 1.421   -0.416 -1.916 C27 GY6 10 
GY6 C30 C11 C  0 1 N N N -6.354  82.552 14.595 3.810   -0.271 -1.914 C30 GY6 11 
GY6 C33 C12 C  0 1 N N N -8.557  82.701 13.088 2.542   0.792  -0.025 C33 GY6 12 
GY6 C35 C13 C  0 1 Y N N -8.333  87.024 12.685 6.115   2.381  1.635  C35 GY6 13 
GY6 C37 C14 C  0 1 Y N N -9.174  86.480 13.673 5.752   1.074  1.906  C37 GY6 14 
GY6 C39 C15 C  0 1 Y N N -9.274  85.082 13.822 4.592   0.550  1.370  C39 GY6 15 
GY6 C41 C16 C  0 1 Y N N -8.531  84.250 12.992 3.784   1.344  0.552  C41 GY6 16 
GY6 C42 C17 C  0 1 Y N N -7.695  84.801 12.021 4.157   2.664  0.283  C42 GY6 17 
GY6 C44 C18 C  0 1 Y N N -7.594  86.192 11.861 5.317   3.175  0.830  C44 GY6 18 
GY6 C46 C19 C  0 1 Y N N -5.485  84.816 17.129 -9.084  2.077  0.515  C46 GY6 19 
GY6 C48 C20 C  0 1 Y N N -5.400  83.824 18.109 -8.034  2.659  1.201  C48 GY6 20 
GY6 C50 C21 C  0 1 Y N N -6.505  83.552 18.922 -6.731  2.344  0.867  C50 GY6 21 
GY6 C52 C22 C  0 1 Y N N -7.690  84.266 18.755 -6.477  1.446  -0.154 C52 GY6 22 
GY6 C53 C23 C  0 1 Y N N -7.782  85.257 17.776 -7.526  0.864  -0.840 C53 GY6 23 
GY6 C55 C24 C  0 1 Y N N -6.667  85.535 16.959 -8.830  1.175  -0.501 C55 GY6 24 
GY6 N02 N1  N  0 1 N N N -8.942  80.842 15.950 -0.557  -1.133 -0.725 N02 GY6 25 
GY6 N09 N2  N  0 1 N N N -8.803  78.616 14.845 1.296   -2.543 -0.678 N09 GY6 26 
GY6 N13 N3  N  0 1 N N N -9.805  82.633 17.829 -3.256  -0.508 -0.128 N13 GY6 27 
GY6 N29 N4  N  0 1 N N N -7.531  82.017 13.815 2.586   0.097  -1.180 N29 GY6 28 
GY6 O05 O1  O  0 1 N N N -11.141 78.352 17.686 -1.447  -4.016 1.247  O05 GY6 29 
GY6 O08 O2  O  0 1 N N N -10.005 76.868 15.648 1.195   -4.478 0.441  O08 GY6 30 
GY6 O12 O3  O  0 1 N N N -10.974 80.978 18.892 -3.313  -2.319 1.155  O12 GY6 31 
GY6 O34 O4  O  0 1 N N N -9.398  82.016 12.538 1.480   0.963  0.541  O34 GY6 32 
GY6 CL2 CL1 CL 0 0 N N N -10.315 84.397 15.061 4.139   -1.091 1.711  CL2 GY6 33 
GY6 CL  CL2 CL 0 0 N N N -6.788  83.727 11.015 3.161   3.660  -0.732 CL  GY6 34 
GY6 H15 H1  H  0 1 N N N -10.503 84.512 18.288 -4.563  0.175  1.363  H15 GY6 35 
GY6 H16 H2  H  0 1 N N N -10.932 83.211 19.449 -5.290  -0.926 0.169  H16 GY6 36 
GY6 H18 H3  H  0 1 N N N -8.639  83.103 20.301 -4.410  1.956  -0.310 H18 GY6 37 
GY6 H19 H4  H  0 1 N N N -9.107  84.837 20.275 -5.002  0.855  -1.578 H19 GY6 38 
GY6 H23 H5  H  0 1 N N N -6.394  81.464 16.291 4.021   -1.140 -3.914 H23 GY6 39 
GY6 H22 H6  H  0 1 N N N -4.814  81.564 15.442 3.266   0.489  -3.895 H22 GY6 40 
GY6 H26 H7  H  0 1 N N N -6.338  79.298 15.081 1.309   -0.910 -4.038 H26 GY6 41 
GY6 H25 H8  H  0 1 N N N -5.547  80.023 13.641 2.047   -2.191 -3.023 H25 GY6 42 
GY6 H28 H9  H  0 1 N N N -7.643  79.980 12.931 0.764   0.407  -2.196 H28 GY6 43 
GY6 H31 H10 H  0 1 N N N -5.573  82.921 13.914 4.224   -1.199 -1.519 H31 GY6 44 
GY6 H32 H11 H  0 1 N N N -6.671  83.365 15.264 4.548   0.529  -1.852 H32 GY6 45 
GY6 H36 H12 H  0 1 N N N -8.263  88.095 12.569 7.023   2.785  2.056  H36 GY6 46 
GY6 H38 H13 H  0 1 N N N -9.743  87.134 14.317 6.377   0.461  2.538  H38 GY6 47 
GY6 H45 H14 H  0 1 N N N -6.947  86.609 11.103 5.607   4.194  0.623  H45 GY6 48 
GY6 H47 H15 H  0 1 N N N -4.632  85.027 16.501 -10.102 2.323  0.776  H47 GY6 49 
GY6 H49 H16 H  0 1 N N N -4.483  83.268 18.239 -8.233  3.360  1.998  H49 GY6 50 
GY6 H51 H17 H  0 1 N N N -6.440  82.787 19.681 -5.911  2.799  1.402  H51 GY6 51 
GY6 H54 H18 H  0 1 N N N -8.702  85.808 17.645 -7.328  0.163  -1.637 H54 GY6 52 
GY6 H56 H19 H  0 1 N N N -6.729  86.304 16.203 -9.650  0.721  -1.037 H56 GY6 53 
GY6 H10 H20 H  0 1 N N N -8.428  78.036 14.122 2.213   -2.706 -0.951 H10 GY6 54 
GY6 H20 H21 H  0 1 N N N -9.212  82.880 17.062 -2.782  0.016  -0.792 H20 GY6 55 
GY6 H06 H22 H  0 1 N N N -11.270 77.436 17.469 -0.958  -4.812 1.500  H06 GY6 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GY6 CL  C42 SING N N 1  
GY6 C44 C42 DOUB Y N 2  
GY6 C44 C35 SING Y N 3  
GY6 C42 C41 SING Y N 4  
GY6 O34 C33 DOUB N N 5  
GY6 C35 C37 DOUB Y N 6  
GY6 C41 C33 SING N N 7  
GY6 C41 C39 DOUB Y N 8  
GY6 C33 N29 SING N N 9  
GY6 C37 C39 SING Y N 10 
GY6 N29 C27 SING N N 11 
GY6 N29 C30 SING N N 12 
GY6 C39 CL2 SING N N 13 
GY6 C27 C24 SING N N 14 
GY6 C27 C01 SING N N 15 
GY6 C24 C21 SING N N 16 
GY6 C30 C21 SING N N 17 
GY6 N09 C01 SING N N 18 
GY6 N09 C07 SING N N 19 
GY6 C01 N02 DOUB N N 20 
GY6 O08 C07 DOUB N N 21 
GY6 C07 C04 SING N N 22 
GY6 N02 C03 SING N N 23 
GY6 C04 C03 DOUB N N 24 
GY6 C04 O05 SING N N 25 
GY6 C03 C11 SING N N 26 
GY6 C55 C46 DOUB Y N 27 
GY6 C55 C53 SING Y N 28 
GY6 C46 C48 SING Y N 29 
GY6 C53 C52 DOUB Y N 30 
GY6 N13 C11 SING N N 31 
GY6 N13 C14 SING N N 32 
GY6 C11 O12 DOUB N N 33 
GY6 C48 C50 DOUB Y N 34 
GY6 C52 C50 SING Y N 35 
GY6 C52 C17 SING N N 36 
GY6 C14 C17 SING N N 37 
GY6 C14 H15 SING N N 38 
GY6 C14 H16 SING N N 39 
GY6 C17 H18 SING N N 40 
GY6 C17 H19 SING N N 41 
GY6 C21 H23 SING N N 42 
GY6 C21 H22 SING N N 43 
GY6 C24 H26 SING N N 44 
GY6 C24 H25 SING N N 45 
GY6 C27 H28 SING N N 46 
GY6 C30 H31 SING N N 47 
GY6 C30 H32 SING N N 48 
GY6 C35 H36 SING N N 49 
GY6 C37 H38 SING N N 50 
GY6 C44 H45 SING N N 51 
GY6 C46 H47 SING N N 52 
GY6 C48 H49 SING N N 53 
GY6 C50 H51 SING N N 54 
GY6 C53 H54 SING N N 55 
GY6 C55 H56 SING N N 56 
GY6 N09 H10 SING N N 57 
GY6 N13 H20 SING N N 58 
GY6 O05 H06 SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GY6 SMILES           ACDLabs              12.01 "C2(=NC(C(=O)NCCc1ccccc1)=C(O)C(N2)=O)C3CCCN3C(c4c(cccc4Cl)Cl)=O"                                                                                                                             
GY6 InChI            InChI                1.03  "InChI=1S/C24H22Cl2N4O4/c25-15-8-4-9-16(26)18(15)24(34)30-13-5-10-17(30)21-28-19(20(31)23(33)29-21)22(32)27-12-11-14-6-2-1-3-7-14/h1-4,6-9,17,31H,5,10-13H2,(H,27,32)(H,28,29,33)/t17-/m0/s1" 
GY6 InChIKey         InChI                1.03  AEFIMSPWYSLTJK-KRWDZBQOSA-N                                                                                                                                                                   
GY6 SMILES_CANONICAL CACTVS               3.385 "OC1=C(N=C(NC1=O)[C@@H]2CCCN2C(=O)c3c(Cl)cccc3Cl)C(=O)NCCc4ccccc4"                                                                                                                            
GY6 SMILES           CACTVS               3.385 "OC1=C(N=C(NC1=O)[CH]2CCCN2C(=O)c3c(Cl)cccc3Cl)C(=O)NCCc4ccccc4"                                                                                                                              
GY6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)CCNC(=O)C2=C(C(=O)NC(=N2)[C@@H]3CCCN3C(=O)c4c(cccc4Cl)Cl)O"                                                                                                                        
GY6 SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)CCNC(=O)C2=C(C(=O)NC(=N2)C3CCCN3C(=O)c4c(cccc4Cl)Cl)O"                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GY6 "SYSTEMATIC NAME" ACDLabs              12.01 "2-[(2S)-1-(2,6-dichlorobenzene-1-carbonyl)pyrrolidin-2-yl]-5-hydroxy-6-oxo-N-(2-phenylethyl)-1,6-dihydropyrimidine-4-carboxamide"               
GY6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-[(2~{S})-1-[2,6-bis(chloranyl)phenyl]carbonylpyrrolidin-2-yl]-5-oxidanyl-6-oxidanylidene-~{N}-(2-phenylethyl)-1~{H}-pyrimidine-4-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GY6 "Create component" 2017-06-12 RCSB 
GY6 "Initial release"  2017-12-27 RCSB 
# 
