data_GO6
#

_chem_comp.id                                   GO6
_chem_comp.name                                 "(2R,3R)-2,3-bis[(3-methoxy-4-oxidanyl-phenyl)methyl]butane-1,4-diol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H26 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(-)-secoisolariciresinol"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-04
_chem_comp.pdbx_modified_date                   2021-06-04
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       362.417
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GO6
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7CS8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GO6  C10   C1   C  0  1  N  N  N   -97.878  124.749  -21.432   1.295  -0.053  -0.612  C10   GO6   1  
GO6  C13   C2   C  0  1  Y  N  N   -95.270  122.108  -23.665  -2.932   0.675  -0.373  C13   GO6   2  
GO6  C15   C3   C  0  1  Y  N  N   -95.903  121.150  -24.428  -3.554  -0.525  -0.664  C15   GO6   3  
GO6  C17   C4   C  0  1  Y  N  N   -93.897  122.105  -23.541  -3.673   1.750   0.079  C17   GO6   4  
GO6  C20   C5   C  0  1  Y  N  N  -100.627  126.821  -19.838   4.983  -0.708  -0.119  C20   GO6   5  
GO6  C21   C6   C  0  1  Y  N  N   -93.169  121.133  -24.212  -5.042   1.633   0.237  C21   GO6   6  
GO6  C22   C7   C  0  1  Y  N  N   -98.949  128.315  -20.624   4.728   1.309  -1.401  C22   GO6   7  
GO6  C24   C8   C  0  1  Y  N  N  -100.164  128.099  -20.005   5.547   0.374  -0.789  C24   GO6   8  
GO6  C26   C9   C  0  1  N  N  N  -101.896  125.700  -18.188   5.135  -2.713   1.152  C26   GO6   9  
GO6  O01   O1   O  0  1  N  N  N   -94.037  126.064  -22.516  -0.386  -1.418   2.291  O01   GO6  10  
GO6  O02   O2   O  0  1  N  N  N   -94.921  123.785  -19.363   0.571   2.842   1.669  O02   GO6  11  
GO6  O03   O3   O  0  1  N  N  N   -95.788  119.203  -25.883  -5.539  -1.829  -0.792  O03   GO6  12  
GO6  O04   O4   O  0  1  N  N  N  -101.860  126.642  -19.220   5.783  -1.629   0.483  O04   GO6  13  
GO6  O05   O5   O  0  1  N  N  N   -93.105  119.192  -25.679  -7.020   0.321   0.087  O05   GO6  14  
GO6  O06   O6   O  0  1  N  N  N  -100.929  129.166  -19.552   6.898   0.513  -0.843  O06   GO6  15  
GO6  C07   C10  C  0  1  N  N  R   -95.470  124.161  -22.134  -0.740   0.416   0.758  C07   GO6  16  
GO6  C08   C11  C  0  1  N  N  R   -96.390  124.775  -21.049   0.763   0.670   0.626  C08   GO6  17  
GO6  C09   C12  C  0  1  N  N  N   -96.184  123.105  -22.962  -1.440   0.808  -0.544  C09   GO6  18  
GO6  C11   C13  C  0  1  N  N  N   -95.025  125.254  -23.098  -0.984  -1.068   1.042  C11   GO6  19  
GO6  C12   C14  C  0  1  N  N  N   -96.254  124.061  -19.689   1.016   2.173   0.488  C12   GO6  20  
GO6  C14   C15  C  0  1  Y  N  N   -98.670  125.948  -20.914   2.794   0.095  -0.675  C14   GO6  21  
GO6  C16   C16  C  0  1  Y  N  N   -99.893  125.745  -20.295   3.605  -0.842  -0.062  C16   GO6  22  
GO6  C18   C17  C  0  1  Y  N  N   -98.199  127.237  -21.088   3.353   1.166  -1.344  C18   GO6  23  
GO6  C19   C18  C  0  1  Y  N  N   -95.186  120.197  -25.095  -4.924  -0.651  -0.502  C19   GO6  24  
GO6  C23   C19  C  0  1  Y  N  N   -93.819  120.184  -24.989  -5.673   0.435  -0.057  C23   GO6  25  
GO6  C25   C20  C  0  1  N  N  N   -97.118  119.292  -26.314  -4.708  -2.901  -1.243  C25   GO6  26  
GO6  H102  H1   H  0  0  N  N  N   -97.953  124.732  -22.529   1.036  -1.110  -0.555  H102  GO6  27  
GO6  H101  H2   H  0  0  N  N  N   -98.326  123.833  -21.019   0.850   0.382  -1.507  H101  GO6  28  
GO6  H151  H3   H  0  0  N  N  N   -96.981  121.153  -24.500  -2.973  -1.364  -1.017  H151  GO6  29  
GO6  H171  H4   H  0  0  N  N  N   -93.398  122.845  -22.933  -3.182   2.684   0.309  H171  GO6  30  
GO6  H211  H5   H  0  0  N  N  N   -92.092  121.115  -24.129  -5.619   2.474   0.591  H211  GO6  31  
GO6  H221  H6   H  0  0  N  N  N   -98.579  129.322  -20.749   5.162   2.150  -1.921  H221  GO6  32  
GO6  H262  H7   H  0  0  N  N  N  -102.915  125.644  -17.777   4.493  -2.321   1.941  H262  GO6  33  
GO6  H261  H8   H  0  0  N  N  N  -101.605  124.715  -18.581   4.531  -3.272   0.437  H261  GO6  34  
GO6  H263  H9   H  0  0  N  N  N  -101.196  125.999  -17.394   5.886  -3.372   1.587  H263  GO6  35  
GO6  H011  H10  H  0  0  N  N  N   -93.775  126.737  -23.133  -0.502  -2.347   2.536  H011  GO6  36  
GO6  H021  H11  H  0  0  N  N  N   -94.885  123.347  -18.521   0.700   3.800   1.651  H021  GO6  37  
GO6  H051  H12  H  0  0  N  N  N   -92.175  119.301  -25.518  -7.298   0.023   0.964  H051  GO6  38  
GO6  H061  H13  H  0  0  N  N  N  -101.727  128.838  -19.155   7.271   1.025  -0.112  H061  GO6  39  
GO6  H071  H14  H  0  0  N  N  N   -94.588  123.716  -21.650  -1.139   1.013   1.579  H071  GO6  40  
GO6  H081  H15  H  0  0  N  N  N   -96.093  125.825  -20.911   1.274   0.296   1.513  H081  GO6  41  
GO6  H092  H16  H  0  0  N  N  N   -96.781  123.620  -23.729  -1.106   0.152  -1.348  H092  GO6  42  
GO6  H091  H17  H  0  0  N  N  N   -96.852  122.542  -22.294  -1.194   1.841  -0.793  H091  GO6  43  
GO6  H111  H18  H  0  0  N  N  N   -95.892  125.877  -23.361  -0.541  -1.667   0.246  H111  GO6  44  
GO6  H112  H19  H  0  0  N  N  N   -94.619  124.788  -24.008  -2.056  -1.258   1.086  H112  GO6  45  
GO6  H121  H20  H  0  0  N  N  N   -96.683  124.705  -18.907   0.469   2.555  -0.374  H121  GO6  46  
GO6  H122  H21  H  0  0  N  N  N   -96.811  123.113  -19.730   2.082   2.350   0.350  H122  GO6  47  
GO6  H161  H22  H  0  0  N  N  N  -100.273  124.742  -20.170   3.165  -1.679   0.460  H161  GO6  48  
GO6  H181  H23  H  0  0  N  N  N   -97.254  127.407  -21.582   2.716   1.896  -1.821  H181  GO6  49  
GO6  H253  H24  H  0  0  N  N  N   -97.370  118.405  -26.914  -5.323  -3.780  -1.438  H253  GO6  50  
GO6  H251  H25  H  0  0  N  N  N   -97.784  119.345  -25.440  -4.197  -2.604  -2.158  H251  GO6  51  
GO6  H252  H26  H  0  0  N  N  N   -97.245  120.197  -26.927  -3.971  -3.137  -0.475  H252  GO6  52  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GO6  C25  O03   SING  N  N   1  
GO6  O03  C19   SING  N  N   2  
GO6  O05  C23   SING  N  N   3  
GO6  C19  C23   DOUB  Y  N   4  
GO6  C19  C15   SING  Y  N   5  
GO6  C23  C21   SING  Y  N   6  
GO6  C15  C13   DOUB  Y  N   7  
GO6  C21  C17   DOUB  Y  N   8  
GO6  C13  C17   SING  Y  N   9  
GO6  C13  C09   SING  N  N  10  
GO6  C11  O01   SING  N  N  11  
GO6  C11  C07   SING  N  N  12  
GO6  C09  C07   SING  N  N  13  
GO6  C07  C08   SING  N  N  14  
GO6  C10  C08   SING  N  N  15  
GO6  C10  C14   SING  N  N  16  
GO6  C18  C14   DOUB  Y  N  17  
GO6  C18  C22   SING  Y  N  18  
GO6  C08  C12   SING  N  N  19  
GO6  C14  C16   SING  Y  N  20  
GO6  C22  C24   DOUB  Y  N  21  
GO6  C16  C20   DOUB  Y  N  22  
GO6  C24  C20   SING  Y  N  23  
GO6  C24  O06   SING  N  N  24  
GO6  C20  O04   SING  N  N  25  
GO6  C12  O02   SING  N  N  26  
GO6  O04  C26   SING  N  N  27  
GO6  C10  H102  SING  N  N  28  
GO6  C10  H101  SING  N  N  29  
GO6  C15  H151  SING  N  N  30  
GO6  C17  H171  SING  N  N  31  
GO6  C21  H211  SING  N  N  32  
GO6  C22  H221  SING  N  N  33  
GO6  C26  H262  SING  N  N  34  
GO6  C26  H261  SING  N  N  35  
GO6  C26  H263  SING  N  N  36  
GO6  O01  H011  SING  N  N  37  
GO6  O02  H021  SING  N  N  38  
GO6  O05  H051  SING  N  N  39  
GO6  O06  H061  SING  N  N  40  
GO6  C07  H071  SING  N  N  41  
GO6  C08  H081  SING  N  N  42  
GO6  C09  H092  SING  N  N  43  
GO6  C09  H091  SING  N  N  44  
GO6  C11  H111  SING  N  N  45  
GO6  C11  H112  SING  N  N  46  
GO6  C12  H121  SING  N  N  47  
GO6  C12  H122  SING  N  N  48  
GO6  C16  H161  SING  N  N  49  
GO6  C18  H181  SING  N  N  50  
GO6  C25  H253  SING  N  N  51  
GO6  C25  H251  SING  N  N  52  
GO6  C25  H252  SING  N  N  53  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GO6  InChI             InChI                 1.03   "InChI=1S/C20H26O6/c1-25-19-9-13(3-5-17(19)23)7-15(11-21)16(12-22)8-14-4-6-18(24)20(10-14)26-2/h3-6,9-10,15-16,21-24H,7-8,11-12H2,1-2H3/t15-,16-/m0/s1"  
GO6  InChIKey          InChI                 1.03   PUETUDUXMCLALY-HOTGVXAUSA-N  
GO6  SMILES_CANONICAL  CACTVS                3.385  "COc1cc(C[C@@H](CO)[C@H](CO)Cc2ccc(O)c(OC)c2)ccc1O"  
GO6  SMILES            CACTVS                3.385  "COc1cc(C[CH](CO)[CH](CO)Cc2ccc(O)c(OC)c2)ccc1O"  
GO6  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "COc1cc(ccc1O)C[C@@H](CO)[C@@H](Cc2ccc(c(c2)OC)O)CO"  
GO6  SMILES            "OpenEye OEToolkits"  2.0.7  "COc1cc(ccc1O)CC(CO)C(Cc2ccc(c(c2)OC)O)CO"  
#
_pdbx_chem_comp_identifier.comp_id          GO6
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{R})-2,3-bis[(3-methoxy-4-oxidanyl-phenyl)methyl]butane-1,4-diol"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     GO6
_pdbx_chem_comp_synonyms.name        "(-)-secoisolariciresinol"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GO6  "Create component"  2020-09-04  PDBJ  
GO6  "Modify synonyms"   2021-03-01  PDBE  
GO6  "Initial release"   2021-06-09  RCSB  
##
