data_G46
#

_chem_comp.id                                   G46
_chem_comp.name                                 "GUANOSINE-5'-MONOTHIOPHOSPHATE"
_chem_comp.type                                 "RNA LINKING"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C10 H14 N5 O7 P S"
_chem_comp.mon_nstd_parent_comp_id              G
_chem_comp.pdbx_synonyms                        "5'-O-thiophosphonoguanosine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1998-01-07
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       379.286
_chem_comp.one_letter_code                      G
_chem_comp.three_letter_code                    G46
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G46  P       P       P  0  1  N  N  N  10.908  -3.677  32.997  -4.898   0.514  -0.441  P       G46   1  
G46  O1P     O1P     O  0  1  N  N  N  11.162  -4.767  33.979  -5.423   1.179  -1.810  O1P     G46   2  
G46  S2P     S2P     S  0  1  N  N  N  11.205  -4.939  34.367  -4.685   2.017   1.039  S2P     G46   3  
G46  O3P     O3P     O  0  1  N  Y  N   9.488  -2.955  33.353  -5.874  -0.499   0.021  O3P     G46   4  
G46  "O5'"   "O5'"   O  0  1  N  N  N  10.652  -4.352  31.575  -3.474  -0.192  -0.698  "O5'"   G46   5  
G46  "C5'"   "C5'"   C  0  1  N  N  N   9.641  -5.376  31.387  -2.795  -0.960   0.297  "C5'"   G46   6  
G46  "C4'"   "C4'"   C  0  1  N  N  R   9.477  -5.691  29.912  -1.477  -1.485  -0.275  "C4'"   G46   7  
G46  "O4'"   "O4'"   O  0  1  N  N  N   9.103  -4.497  29.159  -0.585  -0.387  -0.533  "O4'"   G46   8  
G46  "C3'"   "C3'"   C  0  1  N  N  S  10.732  -6.155  29.194  -0.788  -2.403   0.753  "C3'"   G46   9  
G46  "O3'"   "O3'"   O  0  1  N  N  N  11.014  -7.513  29.516  -0.618  -3.716   0.216  "O3'"   G46  10  
G46  "C2'"   "C2'"   C  0  1  N  N  R  10.308  -5.945  27.741   0.588  -1.735   0.996  "C2'"   G46  11  
G46  "C1'"   "C1'"   C  0  1  N  N  R   9.612  -4.578  27.836   0.754  -0.861  -0.273  "C1'"   G46  12  
G46  "O2'"   "O2'"   O  0  1  N  N  N   9.352  -6.913  27.309   1.623  -2.716   1.079  "O2'"   G46  13  
G46  N9      N9      N  0  1  Y  N  N  10.522  -3.450  27.621   1.657   0.262  -0.012  N9      G46  14  
G46  C8      C8      C  0  1  Y  N  N  11.034  -2.606  28.574   1.298   1.500   0.435  C8      G46  15  
G46  N7      N7      N  0  1  Y  N  N  11.845  -1.707  28.086   2.355   2.249   0.556  N7      G46  16  
G46  C5      C5      C  0  1  Y  N  N  11.881  -1.977  26.720   3.451   1.539   0.196  C5      G46  17  
G46  C6      C6      C  0  1  N  N  N  12.694  -1.416  25.675   4.834   1.829   0.129  C6      G46  18  
G46  O6      O6      O  0  1  N  N  N  13.536  -0.511  25.753   5.258   2.929   0.440  O6      G46  19  
G46  N1      N1      N  0  1  N  N  N  12.476  -2.040  24.469   5.675   0.856  -0.287  N1      G46  20  
G46  C2      C2      C  0  1  N  N  N  11.636  -3.111  24.269   5.191  -0.371  -0.632  C2      G46  21  
G46  N2      N2      N  0  1  N  N  N  11.597  -3.610  23.020   6.068  -1.340  -1.050  N2      G46  22  
G46  N3      N3      N  0  1  N  N  N  10.896  -3.659  25.220   3.908  -0.652  -0.574  N3      G46  23  
G46  C4      C4      C  0  1  Y  N  N  11.060  -3.039  26.412   3.017   0.259  -0.166  C4      G46  24  
G46  H1P     H1P     H  0  1  N  N  N  10.444  -4.808  34.600  -4.831   1.853  -2.172  H1P     G46  25  
G46  HS      HS      H  0  1  N  N  N  10.154  -4.778  35.115  -5.931   2.512   1.148  HS      G46  26  
G46  "H5'1"  "H5'1"  H  0  0  N  N  N   9.945  -6.288  31.921  -2.591  -0.332   1.164  "H5'1"  G46  27  
G46  "H5'2"  "H5'2"  H  0  0  N  N  N   8.682  -5.018  31.790  -3.421  -1.801   0.596  "H5'2"  G46  28  
G46  "H4'"   "H4'"   H  0  1  N  N  N   8.698  -6.459  29.797  -1.665  -2.033  -1.198  "H4'"   G46  29  
G46  "H3'"   "H3'"   H  0  1  N  N  N  11.577  -5.496  29.440  -1.364  -2.441   1.677  "H3'"   G46  30  
G46  HA      HA      H  0  1  N  N  N  11.800  -7.790  29.061  -0.189  -4.336   0.822  HA      G46  31  
G46  "H2'"   "H2'"   H  0  1  N  N  N  11.185  -5.893  27.078   0.567  -1.117   1.894  "H2'"   G46  32  
G46  "H1'"   "H1'"   H  0  1  N  N  N   8.792  -4.543  27.103   1.117  -1.462  -1.107  "H1'"   G46  33  
G46  HB      HB      H  0  1  N  N  N   9.118  -6.745  26.404   1.513  -3.344   1.807  HB      G46  34  
G46  H8      H8      H  0  1  N  N  N  10.790  -2.678  29.624   0.287   1.811   0.655  H8      G46  35  
G46  H1      H1      H  0  1  N  N  N  12.968  -1.687  23.673   6.627   1.031  -0.341  H1      G46  36  
G46  H2N1    H2N1    H  0  0  N  N  N  11.010  -4.393  22.812   7.017  -1.147  -1.097  H2N1    G46  37  
G46  H2N2    H2N2    H  0  0  N  N  N  12.155  -3.198  22.299   5.738  -2.217  -1.299  H2N2    G46  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G46  P      O1P     SING  N  N   1  
G46  P      S2P     SING  N  N   2  
G46  P      O3P     DOUB  N  N   3  
G46  P      "O5'"   SING  N  N   4  
G46  O1P    H1P     SING  N  N   5  
G46  S2P    HS      SING  N  N   6  
G46  "O5'"  "C5'"   SING  N  N   7  
G46  "C5'"  "C4'"   SING  N  N   8  
G46  "C5'"  "H5'1"  SING  N  N   9  
G46  "C5'"  "H5'2"  SING  N  N  10  
G46  "C4'"  "O4'"   SING  N  N  11  
G46  "C4'"  "C3'"   SING  N  N  12  
G46  "C4'"  "H4'"   SING  N  N  13  
G46  "O4'"  "C1'"   SING  N  N  14  
G46  "C3'"  "O3'"   SING  N  N  15  
G46  "C3'"  "C2'"   SING  N  N  16  
G46  "C3'"  "H3'"   SING  N  N  17  
G46  "O3'"  HA      SING  N  N  18  
G46  "C2'"  "C1'"   SING  N  N  19  
G46  "C2'"  "O2'"   SING  N  N  20  
G46  "C2'"  "H2'"   SING  N  N  21  
G46  "C1'"  N9      SING  N  N  22  
G46  "C1'"  "H1'"   SING  N  N  23  
G46  "O2'"  HB      SING  N  N  24  
G46  N9     C8      SING  Y  N  25  
G46  N9     C4      SING  Y  N  26  
G46  C8     N7      DOUB  Y  N  27  
G46  C8     H8      SING  N  N  28  
G46  N7     C5      SING  Y  N  29  
G46  C5     C6      SING  N  N  30  
G46  C5     C4      DOUB  Y  N  31  
G46  C6     O6      DOUB  N  N  32  
G46  C6     N1      SING  N  N  33  
G46  N1     C2      SING  N  N  34  
G46  N1     H1      SING  N  N  35  
G46  C2     N2      SING  N  N  36  
G46  C2     N3      DOUB  N  N  37  
G46  N2     H2N1    SING  N  N  38  
G46  N2     H2N2    SING  N  N  39  
G46  N3     C4      SING  N  N  40  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G46  SMILES            ACDLabs               12.01  "O=P(O)(S)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O"  
G46  InChI             InChI                 1.03   "InChI=1S/C10H14N5O7PS/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(22-9)1-21-23(19,20)24/h2-3,5-6,9,16-17H,1H2,(H2,19,20,24)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1"  
G46  InChIKey          InChI                 1.03   DIDGPCDGNMIUNX-UUOKFMHZSA-N  
G46  SMILES_CANONICAL  CACTVS                3.385  "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(S)=O)[C@@H](O)[C@H]3O"  
G46  SMILES            CACTVS                3.385  "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(S)=O)[CH](O)[CH]3O"  
G46  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)S)O)O)N=C(NC2=O)N"  
G46  SMILES            "OpenEye OEToolkits"  1.7.6  "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)S)O)O)N=C(NC2=O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
G46  "SYSTEMATIC NAME"  ACDLabs               12.01  "5'-O-thiophosphonoguanosine"  
G46  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "[(2R,3S,4R,5R)-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-sulfanyl-phosphinic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G46  "Create component"    1998-01-07  RCSB  
G46  "Modify descriptor"   2011-06-04  RCSB  
G46  "Modify descriptor"   2012-01-05  RCSB  
G46  "Modify coordinates"  2012-01-05  RCSB  
G46  "Modify name"         2015-02-12  RCSB  
G46  "Modify synonyms"     2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     G46
_pdbx_chem_comp_synonyms.name        "5'-O-thiophosphonoguanosine"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
