data_DT6
# 
_chem_comp.id                                    DT6 
_chem_comp.name                                  2,4-bisacetamido-2,4-dideoxy-beta-D-glucopyranose 
_chem_comp.type                                  "D-saccharide, beta linking" 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C10 H18 N2 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         
;2,4-bis(acetylamino)-2,4-dideoxy-beta-D-glucopyranose; 2,4-bisacetamido-2,4-dideoxy-beta-D-glucose;
2,4-bisacetamido-2,4-dideoxy-D-glucose; 2,4-bisacetamido-2,4-dideoxy-glucose
;
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2006-06-29 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        262.260 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DT6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2HI2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 DT6 "2,4-bis(acetylamino)-2,4-dideoxy-beta-D-glucopyranose" PDB ? 
2 DT6 2,4-bisacetamido-2,4-dideoxy-beta-D-glucose             PDB ? 
3 DT6 2,4-bisacetamido-2,4-dideoxy-D-glucose                  PDB ? 
4 DT6 2,4-bisacetamido-2,4-dideoxy-glucose                    PDB ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DT6 O1   O1   O 0 1 N Y N N N N 5.031  47.030 6.388 2.297  2.042  0.083  O1   DT6 1  
DT6 C1   C1   C 0 1 N N R N N N 3.805  46.411 6.632 1.229  1.236  -0.418 C1   DT6 2  
DT6 C2   C2   C 0 1 N N R N N N 3.071  46.168 5.296 1.410  -0.206 0.060  C2   DT6 3  
DT6 N2   N2   N 0 1 N N N N N N 2.842  47.432 4.622 2.659  -0.749 -0.480 N2   DT6 4  
DT6 C3   C3   C 0 1 N N S N N N 1.750  45.397 5.534 0.230  -1.051 -0.431 C3   DT6 5  
DT6 N3   N3   N 0 1 N N N N N N 0.884  43.291 6.528 -2.214 -1.186 -0.449 N3   DT6 6  
DT6 O3   O3   O 0 1 N N N N N N 1.080  45.127 4.275 0.353  -2.382 0.072  O3   DT6 7  
DT6 C4   C4   C 0 1 N N S N N N 2.086  44.076 6.261 -1.075 -0.429 0.076  C4   DT6 8  
DT6 C5   C5   C 0 1 N N S N N N 2.830  44.407 7.571 -1.160 1.022  -0.403 C5   DT6 9  
DT6 O5   O5   O 0 1 N N N N N N 4.049  45.150 7.293 -0.017 1.744  0.062  O5   DT6 10 
DT6 C6   C6   C 0 1 N N N N N N 3.234  43.175 8.337 -2.431 1.669  0.149  C6   DT6 11 
DT6 O6   O6   O 0 1 N N N N N N 2.115  42.600 8.987 -2.571 2.984  -0.391 O6   DT6 12 
DT6 C7   C7   C 0 1 N N N N N N 3.181  47.569 3.342 3.823  -0.527 0.161  C7   DT6 13 
DT6 O7   O7   O 0 1 N N N N N N 3.661  46.647 2.674 3.837  0.121  1.186  O7   DT6 14 
DT6 C8   C8   C 0 1 N N N N N N 2.925  48.935 2.722 5.108  -1.085 -0.395 C8   DT6 15 
DT6 O8   O8   O 0 1 N N N N N N 1.706  41.383 5.597 -3.503 -0.547 1.239  O8   DT6 16 
DT6 C9   C9   C 0 1 N N N N N N 0.795  42.001 6.170 -3.389 -1.179 0.211  C9   DT6 17 
DT6 C10  C10  C 0 1 N N N N N N -0.522 41.305 6.509 -4.561 -1.957 -0.330 C10  DT6 18 
DT6 HO1  HO1  H 0 1 N Y N N N N 5.481  47.178 7.212 2.247  2.971  -0.181 HO1  DT6 19 
DT6 H1   H1   H 0 1 N N N N N N 3.171  47.048 7.267 1.236  1.262  -1.508 H1   DT6 20 
DT6 H2   H2   H 0 1 N N N N N N 3.718  45.539 4.667 1.444  -0.227 1.150  H2   DT6 21 
DT6 HN2  HN2  H 0 1 N N N N N N 2.431  48.198 5.117 2.648  -1.267 -1.300 HN2  DT6 22 
DT6 H3   H3   H 0 1 N N N N N N 1.100  46.002 6.183 0.225  -1.071 -1.521 H3   DT6 23 
DT6 HN3  HN3  H 0 1 N N N N N N 0.109  43.725 6.988 -2.123 -1.691 -1.272 HN3  DT6 24 
DT6 HO3  HO3  H 0 1 N Y N N N N 0.273  44.654 4.440 1.161  -2.835 -0.204 HO3  DT6 25 
DT6 H4   H4   H 0 1 N N N N N N 2.764  43.494 5.619 -1.091 -0.456 1.166  H4   DT6 26 
DT6 H5   H5   H 0 1 N N N N N N 2.165  45.015 8.202 -1.184 1.044  -1.493 H5   DT6 27 
DT6 H61  H6   H 0 1 N N N N N N 3.663  42.441 7.639 -3.296 1.067  -0.131 H61  DT6 28 
DT6 H62  H6A  H 0 1 N N N N N N 3.988  43.449 9.090 -2.367 1.727  1.236  H62  DT6 29 
DT6 HO6  HO6  H 0 1 N Y N N N N 2.389  41.825 9.464 -3.357 3.455  -0.083 HO6  DT6 30 
DT6 H81  H8   H 0 1 N N N N N N 3.228  48.921 1.665 4.898  -1.635 -1.313 H81  DT6 31 
DT6 H82  H8A  H 0 1 N N N N N N 1.854  49.175 2.793 5.796  -0.268 -0.610 H82  DT6 32 
DT6 H83  H8B  H 0 1 N N N N N N 3.508  49.697 3.260 5.558  -1.757 0.336  H83  DT6 33 
DT6 H10  H10  H 0 1 N N N N N N -0.482 40.259 6.170 -5.142 -1.322 -0.999 H10  DT6 34 
DT6 H10A H10A H 0 0 N N N N N N -0.681 41.332 7.597 -4.198 -2.826 -0.878 H10A DT6 35 
DT6 H10B H10B H 0 0 N N N N N N -1.351 41.823 6.004 -5.191 -2.286 0.496  H10B DT6 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DT6 O1  C1   SING N N 1  
DT6 O1  HO1  SING N N 2  
DT6 C2  C1   SING N N 3  
DT6 C1  O5   SING N N 4  
DT6 C1  H1   SING N N 5  
DT6 N2  C2   SING N N 6  
DT6 C2  C3   SING N N 7  
DT6 C2  H2   SING N N 8  
DT6 C7  N2   SING N N 9  
DT6 N2  HN2  SING N N 10 
DT6 O3  C3   SING N N 11 
DT6 C3  C4   SING N N 12 
DT6 C3  H3   SING N N 13 
DT6 C9  N3   SING N N 14 
DT6 C4  N3   SING N N 15 
DT6 N3  HN3  SING N N 16 
DT6 O3  HO3  SING N N 17 
DT6 C4  C5   SING N N 18 
DT6 C4  H4   SING N N 19 
DT6 O5  C5   SING N N 20 
DT6 C5  C6   SING N N 21 
DT6 C5  H5   SING N N 22 
DT6 C6  O6   SING N N 23 
DT6 C6  H61  SING N N 24 
DT6 C6  H62  SING N N 25 
DT6 O6  HO6  SING N N 26 
DT6 O7  C7   DOUB N N 27 
DT6 C8  C7   SING N N 28 
DT6 C8  H81  SING N N 29 
DT6 C8  H82  SING N N 30 
DT6 C8  H83  SING N N 31 
DT6 O8  C9   DOUB N N 32 
DT6 C9  C10  SING N N 33 
DT6 C10 H10  SING N N 34 
DT6 C10 H10A SING N N 35 
DT6 C10 H10B SING N N 36 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DT6 SMILES           ACDLabs              12.01 "O=C(NC1C(OC(O)C(NC(=O)C)C1O)CO)C"                                                                                                        
DT6 InChI            InChI                1.03  "InChI=1S/C10H18N2O6/c1-4(14)11-7-6(3-13)18-10(17)8(9(7)16)12-5(2)15/h6-10,13,16-17H,3H2,1-2H3,(H,11,14)(H,12,15)/t6-,7-,8-,9+,10-/m1/s1" 
DT6 InChIKey         InChI                1.03  VNVBLPSANNIIQI-GRDBIXFFSA-N                                                                                                               
DT6 SMILES_CANONICAL CACTVS               3.370 "CC(=O)N[C@H]1[C@H](O)O[C@H](CO)[C@@H](NC(C)=O)[C@@H]1O"                                                                                  
DT6 SMILES           CACTVS               3.370 "CC(=O)N[CH]1[CH](O)O[CH](CO)[CH](NC(C)=O)[CH]1O"                                                                                         
DT6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(=O)N[C@@H]1[C@H](O[C@H]([C@@H]([C@H]1O)NC(=O)C)O)CO"                                                                                  
DT6 SMILES           "OpenEye OEToolkits" 1.7.6 "CC(=O)NC1C(OC(C(C1O)NC(=O)C)O)CO"                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DT6 "SYSTEMATIC NAME"                     ACDLabs              12.01 "2,4-bis(acetylamino)-2,4-dideoxy-beta-D-glucopyranose"                                   
DT6 "SYSTEMATIC NAME"                     "OpenEye OEToolkits" 1.7.6 "N-[(2S,3S,4S,5R,6R)-5-acetamido-2-(hydroxymethyl)-4,6-bis(oxidanyl)oxan-3-yl]ethanamide" 
DT6 "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML                 1.0   "DGlcpNAc[4NAc]b"                                                                         
DT6 "COMMON NAME"                         GMML                 1.0   N-acetyl-b-D-glucopyranose                                                                
DT6 "IUPAC CARBOHYDRATE SYMBOL"           PDB-CARE             1.0   b-D-GlcpNAc4NAc                                                                           
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
DT6 "CARBOHYDRATE ISOMER"                 D        PDB ? 
DT6 "CARBOHYDRATE RING"                   pyranose PDB ? 
DT6 "CARBOHYDRATE ANOMER"                 beta     PDB ? 
DT6 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DT6 "Create component"         2006-06-29 RCSB 
DT6 "Modify descriptor"        2011-06-04 RCSB 
DT6 "Other modification"       2013-01-08 RCSB 
DT6 "Other modification"       2020-07-03 RCSB 
DT6 "Modify name"              2020-07-17 RCSB 
DT6 "Modify synonyms"          2020-07-17 RCSB 
DT6 "Modify linking type"      2020-07-17 RCSB 
DT6 "Modify atom id"           2020-07-17 RCSB 
DT6 "Modify component atom id" 2020-07-17 RCSB 
DT6 "Modify leaving atom flag" 2020-07-17 RCSB 
DT6 "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            DT6 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Carbohydrate 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
