data_9I6
#

_chem_comp.id                                   9I6
_chem_comp.name                                 "(2S,3R)-2-azanyl-N-[5-(7-bromanyl-6-chloranyl-4-oxidanylidene-quinazolin-3-yl)pentyl]-3-oxidanyl-N-[[3-(1-oxidanylidene-2,3-dihydroisoindol-5-yl)phenyl]methyl]butanamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C32 H33 Br Cl N5 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2022-01-18
_chem_comp.pdbx_modified_date                   2022-04-22
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       666.993
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9I6
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7WM7
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9I6  C1   C1   C   0  1  Y  N  N  -4.984   -3.151  -2.332  -10.275   1.467  -0.198  C1   9I6   1  
9I6  C2   C2   C   0  1  Y  N  N  -5.396   -1.939  -1.805  -10.498   0.729   0.969  C2   9I6   2  
9I6  C3   C3   C   0  1  Y  N  N  -4.453   -1.031  -1.333   -9.407   0.258   1.706  C3   9I6   3  
9I6  C4   C4   C   0  1  Y  N  N  -3.105   -1.347  -1.389   -8.124   0.522   1.281  C4   9I6   4  
9I6  C5   C5   C   0  1  Y  N  N  -2.665   -2.576  -1.893   -7.909   1.259   0.116  C5   9I6   5  
9I6  C6   C6   C   0  1  Y  N  N  -3.630   -3.470  -2.371   -8.997   1.729  -0.622  C6   9I6   6  
9I6  C7   C7   C   0  1  N  N  N  -6.182   -3.930  -2.789  -11.636   1.814  -0.749  C7   9I6   7  
9I6  N8   N1   N   0  1  N  N  N  -7.270   -3.025  -2.440  -12.614   1.229   0.176  N8   9I6   8  
9I6  C9   C8   C   0  1  N  N  N  -6.869   -1.875  -1.869  -11.954   0.608   1.169  C9   9I6   9  
9I6  O10  O1   O   0  1  N  N  N  -7.609   -0.986  -1.457  -12.482   0.024   2.095  O10  9I6  10  
9I6  C11  C9   C   0  1  Y  N  N  -1.212   -2.923  -1.924   -6.525   1.541  -0.337  C11  9I6  11  
9I6  C12  C10  C   0  1  Y  N  N  -0.782   -4.175  -2.376   -5.438   1.067   0.395  C12  9I6  12  
9I6  C13  C11  C   0  1  Y  N  N   0.554   -4.561  -2.320   -4.153   1.332  -0.033  C13  9I6  13  
9I6  C14  C12  C   0  1  Y  N  N   1.488   -3.646  -1.856   -3.943   2.068  -1.186  C14  9I6  14  
9I6  C15  C13  C   0  1  Y  N  N   1.093   -2.387  -1.436   -5.018   2.542  -1.916  C15  9I6  15  
9I6  C16  C14  C   0  1  Y  N  N  -0.245   -2.028  -1.465   -6.308   2.277  -1.501  C16  9I6  16  
9I6  C17  C15  C   0  1  N  N  N   0.947   -5.985  -2.638   -2.977   0.821   0.758  C17  9I6  17  
9I6  N18  N2   N   0  1  N  N  N   2.288   -6.135  -3.215   -2.602  -0.509   0.271  N18  9I6  18  
9I6  C19  C16  C   0  1  N  N  N   3.340   -6.656  -2.328   -1.622  -0.644  -0.810  C19  9I6  19  
9I6  C20  C17  C   0  1  N  N  N   2.930   -7.829  -1.449   -0.209  -0.604  -0.225  C20  9I6  20  
9I6  C21  C18  C   0  1  N  N  N   2.342   -9.028  -2.185    0.814  -0.745  -1.353  C21  9I6  21  
9I6  C22  C19  C   0  1  N  N  N   2.046  -10.186  -1.240    2.227  -0.706  -0.768  C22  9I6  22  
9I6  C23  C20  C   0  1  N  N  N   1.515  -11.443  -1.910    3.251  -0.847  -1.896  C23  9I6  23  
9I6  C24  C21  C   0  1  N  N  N   2.455   -5.796  -4.512   -3.159  -1.608   0.817  C24  9I6  24  
9I6  C25  C22  C   0  1  N  N  S   3.846   -5.877  -5.145   -2.696  -2.978   0.392  C25  9I6  25  
9I6  O26  O2   O   0  1  N  N  N   1.518   -5.432  -5.199   -4.034  -1.495   1.649  O26  9I6  26  
9I6  C27  C23  C   0  1  N  N  R   4.448   -4.477  -5.343   -3.253  -3.297  -0.997  C27  9I6  27  
9I6  C28  C24  C   0  1  N  N  N   4.970   -3.879  -4.054   -2.728  -4.659  -1.456  C28  9I6  28  
9I6  O29  O3   O   0  1  N  N  N   5.506   -4.561  -6.300   -4.680  -3.330  -0.942  O29  9I6  29  
9I6  N30  N3   N   0  1  N  N  N   3.757   -6.599  -6.407   -3.178  -3.978   1.354  N30  9I6  30  
9I6  N31  N4   N   0  1  N  N  N   0.280  -11.217  -2.681    4.604  -0.808  -1.336  N31  9I6  31  
9I6  C32  C25  C   0  1  N  N  N   0.216  -11.763  -3.958    5.241   0.378  -1.202  C32  9I6  32  
9I6  C33  C26  C   0  1  Y  N  N  -1.071  -11.549  -4.634    6.595   0.359  -0.628  C33  9I6  33  
9I6  C34  C27  C   0  1  Y  N  N  -2.084  -10.839  -3.980    7.139  -0.890  -0.256  C34  9I6  34  
9I6  N35  N5   N   0  1  N  N  N  -1.915  -10.317  -2.696    6.399  -2.012  -0.440  N35  9I6  35  
9I6  C36  C28  C   0  1  N  N  N  -0.779  -10.532  -2.136    5.206  -1.964  -0.950  C36  9I6  36  
9I6  C37  C29  C   0  1  Y  N  N  -1.288  -12.078  -5.905    7.335   1.526  -0.449  C37  9I6  37  
9I6  C38  C30  C   0  1  Y  N  N  -2.517  -11.913  -6.514    8.600   1.451   0.093  C38  9I6  38  
9I6  C39  C31  C   0  1  Y  N  N  -3.531  -11.212  -5.870    9.139   0.222   0.461  C39  9I6  39  
9I6  C40  C32  C   0  1  Y  N  N  -3.320  -10.667  -4.610    8.422  -0.942   0.292  C40  9I6  40  
9I6  BR1  BR1  BR  0  0  N  N  N  -5.242  -11.013  -6.671   10.878   0.149   1.202  BR1  9I6  41  
9I6  CL1  CL1  CL  0  0  N  N  N  -2.763  -12.625  -8.076    9.528   2.900   0.319  CL1  9I6  42  
9I6  O43  O4   O   0  1  N  N  N   1.162  -12.362  -4.437    4.714   1.421  -1.544  O43  9I6  43  
9I6  H1   H1   H   0  1  N  N  N  -4.771   -0.083  -0.924   -9.571  -0.312   2.609  H1   9I6  44  
9I6  H2   H2   H   0  1  N  N  N  -2.379   -0.630  -1.036   -7.283   0.158   1.852  H2   9I6  45  
9I6  H3   H3   H   0  1  N  N  N  -3.319   -4.422  -2.776   -8.832   2.299  -1.524  H3   9I6  46  
9I6  H4   H4   H   0  1  N  N  N  -6.268   -4.886  -2.252  -11.762   2.895  -0.792  H4   9I6  47  
9I6  H5   H5   H   0  1  N  N  N  -1.509   -4.863  -2.781   -5.601   0.493   1.295  H5   9I6  48  
9I6  H6   H6   H   0  1  N  N  N   2.533   -3.918  -1.822   -2.936   2.273  -1.516  H6   9I6  49  
9I6  H7   H7   H   0  1  N  N  N   1.831   -1.682  -1.084   -4.848   3.116  -2.815  H7   9I6  50  
9I6  H8   H8   H   0  1  N  N  N  -0.542   -1.046  -1.129   -7.146   2.644  -2.074  H8   9I6  51  
9I6  H9   H9   H   0  1  N  N  N   0.218   -6.390  -3.355   -2.135   1.502   0.638  H9   9I6  52  
9I6  H10  H10  H   0  1  N  N  N   0.907   -6.568  -1.706   -3.247   0.759   1.812  H10  9I6  53  
9I6  H11  H11  H   0  1  N  N  N   4.183   -6.980  -2.955   -1.776  -1.593  -1.323  H11  9I6  54  
9I6  H12  H12  H   0  1  N  N  N   3.666   -5.837  -1.670   -1.746   0.176  -1.517  H12  9I6  55  
9I6  H13  H13  H   0  1  N  N  N   3.822   -8.171  -0.903   -0.055   0.345   0.289  H13  9I6  56  
9I6  H14  H14  H   0  1  N  N  N   2.177   -7.469  -0.733   -0.086  -1.424   0.483  H14  9I6  57  
9I6  H15  H15  H   0  1  N  N  N   1.406   -8.721  -2.675    0.660  -1.694  -1.867  H15  9I6  58  
9I6  H16  H16  H   0  1  N  N  N   3.061   -9.365  -2.946    0.691   0.075  -2.060  H16  9I6  59  
9I6  H17  H17  H   0  1  N  N  N   2.978  -10.446  -0.717    2.381   0.243  -0.254  H17  9I6  60  
9I6  H18  H18  H   0  1  N  N  N   1.297   -9.847  -0.509    2.351  -1.526  -0.060  H18  9I6  61  
9I6  H19  H19  H   0  1  N  N  N   1.308  -12.192  -1.132    3.097  -1.796  -2.410  H19  9I6  62  
9I6  H20  H20  H   0  1  N  N  N   2.287  -11.827  -2.593    3.127  -0.027  -2.603  H20  9I6  63  
9I6  H21  H21  H   0  1  N  N  N   4.501   -6.434  -4.459   -1.607  -2.999   0.361  H21  9I6  64  
9I6  H22  H22  H   0  1  N  N  N   3.656   -3.819  -5.732   -2.934  -2.529  -1.701  H22  9I6  65  
9I6  H23  H23  H   0  1  N  N  N   4.152   -3.816  -3.321   -3.047  -5.427  -0.752  H23  9I6  66  
9I6  H24  H24  H   0  1  N  N  N   5.773   -4.515  -3.654   -3.125  -4.886  -2.446  H24  9I6  67  
9I6  H25  H25  H   0  1  N  N  N   5.364   -2.871  -4.251   -1.639  -4.633  -1.498  H25  9I6  68  
9I6  H26  H26  H   0  1  N  N  N   5.885   -3.700  -6.430   -5.035  -3.993  -0.333  H26  9I6  69  
9I6  H27  H27  H   0  1  N  N  N   3.363   -7.504  -6.247   -4.186  -3.978   1.402  H27  9I6  70  
9I6  H28  H28  H   0  1  N  N  N   3.176   -6.090  -7.042   -2.827  -4.896   1.128  H28  9I6  71  
9I6  H30  H30  H   0  1  N  N  N  -0.643  -10.136  -1.140    4.662  -2.889  -1.069  H30  9I6  72  
9I6  H31  H31  H   0  1  N  N  N  -0.499  -12.614  -6.411    6.921   2.482  -0.734  H31  9I6  73  
9I6  H32  H32  H   0  1  N  N  N  -4.107  -10.113  -4.119    8.851  -1.890   0.581  H32  9I6  74  
9I6  H29  H29  H   0  1  N  N  N  -8.232   -3.240  -2.610  -13.578   1.284   0.087  H29  9I6  75  
9I6  H33  H33  H   0  1  N  N  N  -6.149   -4.119  -3.872  -11.755   1.382  -1.742  H33  9I6  76  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9I6  CL1  C38  SING  N  N   1  
9I6  BR1  C39  SING  N  N   2  
9I6  C38  C37  DOUB  Y  N   3  
9I6  C38  C39  SING  Y  N   4  
9I6  N30  C25  SING  N  N   5  
9I6  O29  C27  SING  N  N   6  
9I6  C37  C33  SING  Y  N   7  
9I6  C39  C40  DOUB  Y  N   8  
9I6  C27  C25  SING  N  N   9  
9I6  C27  C28  SING  N  N  10  
9I6  O26  C24  DOUB  N  N  11  
9I6  C25  C24  SING  N  N  12  
9I6  C33  C34  DOUB  Y  N  13  
9I6  C33  C32  SING  N  N  14  
9I6  C40  C34  SING  Y  N  15  
9I6  C24  N18  SING  N  N  16  
9I6  O43  C32  DOUB  N  N  17  
9I6  C34  N35  SING  N  N  18  
9I6  C32  N31  SING  N  N  19  
9I6  N18  C17  SING  N  N  20  
9I6  N18  C19  SING  N  N  21  
9I6  C7   N8   SING  N  N  22  
9I6  C7   C1   SING  N  N  23  
9I6  N35  C36  DOUB  N  N  24  
9I6  N31  C36  SING  N  N  25  
9I6  N31  C23  SING  N  N  26  
9I6  C17  C13  SING  N  N  27  
9I6  N8   C9   SING  N  N  28  
9I6  C12  C13  DOUB  Y  N  29  
9I6  C12  C11  SING  Y  N  30  
9I6  C6   C1   DOUB  Y  N  31  
9I6  C6   C5   SING  Y  N  32  
9I6  C1   C2   SING  Y  N  33  
9I6  C19  C20  SING  N  N  34  
9I6  C13  C14  SING  Y  N  35  
9I6  C21  C20  SING  N  N  36  
9I6  C21  C22  SING  N  N  37  
9I6  C11  C5   SING  N  N  38  
9I6  C11  C16  DOUB  Y  N  39  
9I6  C23  C22  SING  N  N  40  
9I6  C5   C4   DOUB  Y  N  41  
9I6  C9   C2   SING  N  N  42  
9I6  C9   O10  DOUB  N  N  43  
9I6  C14  C15  DOUB  Y  N  44  
9I6  C2   C3   DOUB  Y  N  45  
9I6  C16  C15  SING  Y  N  46  
9I6  C4   C3   SING  Y  N  47  
9I6  C3   H1   SING  N  N  48  
9I6  C4   H2   SING  N  N  49  
9I6  C6   H3   SING  N  N  50  
9I6  C7   H4   SING  N  N  51  
9I6  C12  H5   SING  N  N  52  
9I6  C14  H6   SING  N  N  53  
9I6  C15  H7   SING  N  N  54  
9I6  C16  H8   SING  N  N  55  
9I6  C17  H9   SING  N  N  56  
9I6  C17  H10  SING  N  N  57  
9I6  C19  H11  SING  N  N  58  
9I6  C19  H12  SING  N  N  59  
9I6  C20  H13  SING  N  N  60  
9I6  C20  H14  SING  N  N  61  
9I6  C21  H15  SING  N  N  62  
9I6  C21  H16  SING  N  N  63  
9I6  C22  H17  SING  N  N  64  
9I6  C22  H18  SING  N  N  65  
9I6  C23  H19  SING  N  N  66  
9I6  C23  H20  SING  N  N  67  
9I6  C25  H21  SING  N  N  68  
9I6  C27  H22  SING  N  N  69  
9I6  C28  H23  SING  N  N  70  
9I6  C28  H24  SING  N  N  71  
9I6  C28  H25  SING  N  N  72  
9I6  O29  H26  SING  N  N  73  
9I6  N30  H27  SING  N  N  74  
9I6  N30  H28  SING  N  N  75  
9I6  C36  H30  SING  N  N  76  
9I6  C37  H31  SING  N  N  77  
9I6  C40  H32  SING  N  N  78  
9I6  N8   H29  SING  N  N  79  
9I6  C7   H33  SING  N  N  80  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9I6  InChI             InChI                 1.03   "InChI=1S/C32H33BrClN5O4/c1-19(40)29(35)32(43)38(10-3-2-4-11-39-18-37-28-15-26(33)27(34)14-25(28)31(39)42)17-20-6-5-7-21(12-20)22-8-9-24-23(13-22)16-36-30(24)41/h5-9,12-15,18-19,29,40H,2-4,10-11,16-17,35H2,1H3,(H,36,41)/t19-,29+/m1/s1"  
9I6  InChIKey          InChI                 1.03   BLRJMFLSHHBCFQ-XBBWARJSSA-N  
9I6  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H](O)[C@H](N)C(=O)N(CCCCCN1C=Nc2cc(Br)c(Cl)cc2C1=O)Cc3cccc(c3)c4ccc5C(=O)NCc5c4"  
9I6  SMILES            CACTVS                3.385  "C[CH](O)[CH](N)C(=O)N(CCCCCN1C=Nc2cc(Br)c(Cl)cc2C1=O)Cc3cccc(c3)c4ccc5C(=O)NCc5c4"  
9I6  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H]([C@@H](C(=O)N(CCCCCN1C=Nc2cc(c(cc2C1=O)Cl)Br)Cc3cccc(c3)c4ccc5c(c4)CNC5=O)N)O"  
9I6  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C(C(=O)N(CCCCCN1C=Nc2cc(c(cc2C1=O)Cl)Br)Cc3cccc(c3)c4ccc5c(c4)CNC5=O)N)O"  
#
_pdbx_chem_comp_identifier.comp_id          9I6
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S},3~{R})-2-azanyl-~{N}-[5-(7-bromanyl-6-chloranyl-4-oxidanylidene-quinazolin-3-yl)pentyl]-3-oxidanyl-~{N}-[[3-(1-oxidanylidene-2,3-dihydroisoindol-5-yl)phenyl]methyl]butanamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9I6  "Create component"  2022-01-18  PDBJ  
9I6  "Initial release"   2022-04-27  RCSB  
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