data_8V6
# 
_chem_comp.id                                    8V6 
_chem_comp.name                                  "(2Z,4E)-3-methyl-5-[(1S,4S)-2,6,6-trimethyl-4-[3-(4-methylphenyl)prop-2-ynoxy]-1-oxidanyl-cyclohex-2-en-1-yl]penta-2,4-dienoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H30 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-10-03 
_chem_comp.pdbx_modified_date                    2018-04-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        394.503 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8V6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5YGV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8V6 C1    C1  C 0 1 N N N 11.606 2.772  9.274  -6.660 1.957  -0.418 C1    8V6 1  
8V6 C2    C2  C 0 1 N N N 12.242 1.425  8.929  -5.663 2.715  0.247  C2    8V6 2  
8V6 C3    C3  C 0 1 N N N 12.140 0.796  7.532  -4.432 2.189  0.442  C3    8V6 3  
8V6 C4    C4  C 0 1 N N N 11.413 1.502  6.390  -4.186 0.776  0.154  C4    8V6 4  
8V6 C5    C5  C 0 1 N N N 11.350 0.901  4.992  -2.947 0.285  0.230  C5    8V6 5  
8V6 C6    C6  C 0 1 N N N 12.847 -0.529 7.254  -3.314 3.059  0.956  C6    8V6 6  
8V6 O11   O1  O 0 1 N N N 10.974 3.450  8.440  -6.376 0.887  -0.921 O11   8V6 7  
8V6 O12   O2  O 0 1 N N N 11.703 3.207  10.439 -7.925 2.422  -0.489 O12   8V6 8  
8V6 "C1'" C7  C 0 1 N N S 10.635 1.559  3.980  -2.694 -1.170 -0.066 "C1'" 8V6 9  
8V6 "C6'" C8  C 0 1 N N N 9.150  1.040  3.929  -2.095 -1.843 1.171  "C6'" 8V6 10 
8V6 "C9'" C9  C 0 1 N N N 8.438  1.205  5.300  -2.932 -1.493 2.402  "C9'" 8V6 11 
8V6 "C5'" C10 C 0 1 N N N 9.168  -0.439 3.586  -0.662 -1.327 1.357  "C5'" 8V6 12 
8V6 "C8'" C11 C 0 1 N N N 8.304  1.828  2.873  -2.078 -3.360 0.974  "C8'" 8V6 13 
8V6 O1    O3  O 0 1 N N N 10.578 2.974  4.186  -3.929 -1.807 -0.401 O1    8V6 14 
8V6 "C2'" C12 C 0 1 N N N 11.303 1.317  2.770  -1.746 -1.285 -1.224 "C2'" 8V6 15 
8V6 "C7'" C13 C 0 1 N N N 12.372 2.111  2.349  -2.290 -1.048 -2.609 "C7'" 8V6 16 
8V6 "C3'" C14 C 0 1 N N N 10.911 0.287  1.925  -0.489 -1.573 -1.107 "C3'" 8V6 17 
8V6 "C4'" C15 C 0 1 N N S 9.850  -0.615 2.191  0.193  -1.843 0.198  "C4'" 8V6 18 
8V6 "O4'" O4  O 0 1 N N N 10.325 -1.972 2.089  1.462  -1.185 0.214  "O4'" 8V6 19 
8V6 CA1   C16 C 0 1 N N N 10.793 -2.343 0.780  2.535  -1.982 -0.291 CA1   8V6 20 
8V6 CA2   C17 C 0 1 N N N 12.222 -2.179 0.801  3.789  -1.212 -0.229 CA2   8V6 21 
8V6 CA3   C18 C 0 1 N N N 13.349 -2.051 0.813  4.788  -0.598 -0.180 CA3   8V6 22 
8V6 CA4   C19 C 0 1 Y N N 14.713 -1.900 0.838  6.007  0.151  -0.120 CA4   8V6 23 
8V6 CA5   C20 C 0 1 Y N N 15.509 -2.703 0.018  6.006  1.452  0.384  CA5   8V6 24 
8V6 CA6   C21 C 0 1 Y N N 16.893 -2.548 0.030  7.184  2.168  0.440  CA6   8V6 25 
8V6 CA7   C22 C 0 1 Y N N 17.468 -1.591 0.867  8.365  1.598  -0.004 CA7   8V6 26 
8V6 CA0   C23 C 0 1 N N N 18.829 -1.436 0.888  9.648  2.386  0.060  CA10  8V6 27 
8V6 CA8   C24 C 0 1 Y N N 16.674 -0.790 1.679  8.372  0.309  -0.505 CA8   8V6 28 
8V6 CA9   C25 C 0 1 Y N N 15.292 -0.949 1.661  7.202  -0.419 -0.561 CA9   8V6 29 
8V6 H1    H1  H 0 1 N N N 12.784 0.895  9.698  -5.886 3.712  0.597  H1    8V6 30 
8V6 H2    H2  H 0 1 N N N 10.932 2.450  6.578  -5.007 0.130  -0.119 H2    8V6 31 
8V6 H3    H3  H 0 1 N N N 11.855 -0.030 4.780  -2.126 0.932  0.503  H3    8V6 32 
8V6 H4    H4  H 0 1 N N N 13.315 -0.897 8.179  -3.300 3.028  2.046  H4    8V6 33 
8V6 H5    H5  H 0 1 N N N 12.114 -1.267 6.896  -2.362 2.694  0.570  H5    8V6 34 
8V6 H6    H6  H 0 1 N N N 13.621 -0.378 6.487  -3.470 4.086  0.624  H6    8V6 35 
8V6 H7    H7  H 0 1 N N N 11.250 4.039  10.506 -8.533 1.836  -0.961 H7    8V6 36 
8V6 H8    H8  H 0 1 N N N 9.002  0.664  6.074  -3.954 -1.845 2.259  H8    8V6 37 
8V6 H9    H9  H 0 1 N N N 8.388  2.272  5.561  -2.503 -1.974 3.282  H9    8V6 38 
8V6 H10   H10 H 0 1 N N N 7.419  0.796  5.236  -2.936 -0.413 2.545  H10   8V6 39 
8V6 H11   H11 H 0 1 N N N 8.138  -0.824 3.547  -0.663 -0.237 1.356  H11   8V6 40 
8V6 H12   H12 H 0 1 N N N 9.737  -0.990 4.349  -0.262 -1.692 2.303  H12   8V6 41 
8V6 H13   H13 H 0 1 N N N 8.298  2.897  3.131  -1.475 -3.606 0.100  H13   8V6 42 
8V6 H14   H14 H 0 1 N N N 8.747  1.694  1.875  -1.651 -3.836 1.856  H14   8V6 43 
8V6 H15   H15 H 0 1 N N N 7.273  1.446  2.871  -3.096 -3.718 0.825  H15   8V6 44 
8V6 H16   H16 H 0 1 N N N 10.128 3.158  5.002  -4.369 -1.430 -1.175 H16   8V6 45 
8V6 H17   H17 H 0 1 N N N 12.577 2.882  3.106  -2.199 0.009  -2.860 H17   8V6 46 
8V6 H18   H18 H 0 1 N N N 13.265 1.483  2.215  -1.725 -1.642 -3.328 H18   8V6 47 
8V6 H19   H19 H 0 1 N N N 12.116 2.593  1.394  -3.339 -1.340 -2.642 H19   8V6 48 
8V6 H20   H20 H 0 1 N N N 11.453 0.164  0.999  0.104  -1.620 -2.008 H20   8V6 49 
8V6 H21   H21 H 0 1 N N N 9.066  -0.467 1.433  0.343  -2.916 0.312  H21   8V6 50 
8V6 H22   H22 H 0 1 N N N 10.346 -1.690 0.016  2.633  -2.884 0.312  H22   8V6 51 
8V6 H23   H23 H 0 1 N N N 10.533 -3.390 0.565  2.328  -2.257 -1.325 H23   8V6 52 
8V6 H24   H24 H 0 1 N N N 15.052 -3.442 -0.624 5.085  1.897  0.731  H24   8V6 53 
8V6 H25   H25 H 0 1 N N N 17.516 -3.163 -0.603 7.185  3.175  0.830  H25   8V6 54 
8V6 H26   H26 H 0 1 N N N 19.125 -0.691 0.135  10.135 2.210  1.019  H26   8V6 55 
8V6 H27   H27 H 0 1 N N N 19.144 -1.094 1.885  10.309 2.070  -0.747 H27   8V6 56 
8V6 H28   H28 H 0 1 N N N 19.311 -2.398 0.661  9.428  3.448  -0.045 H28   8V6 57 
8V6 H29   H29 H 0 1 N N N 17.127 -0.048 2.320  9.297  -0.130 -0.850 H29   8V6 58 
8V6 H30   H30 H 0 1 N N N 14.670 -0.330 2.290  7.210  -1.428 -0.949 H30   8V6 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8V6 CA5   CA6   DOUB Y N 1  
8V6 CA5   CA4   SING Y N 2  
8V6 CA6   CA7   SING Y N 3  
8V6 CA1   CA2   SING N N 4  
8V6 CA1   "O4'" SING N N 5  
8V6 CA2   CA3   TRIP N N 6  
8V6 CA3   CA4   SING N N 7  
8V6 CA4   CA9   DOUB Y N 8  
8V6 CA7   CA0   SING N N 9  
8V6 CA7   CA8   DOUB Y N 10 
8V6 CA9   CA8   SING Y N 11 
8V6 "C3'" "C4'" SING N N 12 
8V6 "C3'" "C2'" DOUB N N 13 
8V6 "O4'" "C4'" SING N N 14 
8V6 "C4'" "C5'" SING N N 15 
8V6 "C7'" "C2'" SING N N 16 
8V6 "C2'" "C1'" SING N N 17 
8V6 "C8'" "C6'" SING N N 18 
8V6 "C5'" "C6'" SING N N 19 
8V6 "C6'" "C1'" SING N N 20 
8V6 "C6'" "C9'" SING N N 21 
8V6 "C1'" O1    SING N N 22 
8V6 "C1'" C5    SING N N 23 
8V6 C5    C4    DOUB N E 24 
8V6 C4    C3    SING N N 25 
8V6 C6    C3    SING N N 26 
8V6 C3    C2    DOUB N Z 27 
8V6 O11   C1    DOUB N N 28 
8V6 C2    C1    SING N N 29 
8V6 C1    O12   SING N N 30 
8V6 C2    H1    SING N N 31 
8V6 C4    H2    SING N N 32 
8V6 C5    H3    SING N N 33 
8V6 C6    H4    SING N N 34 
8V6 C6    H5    SING N N 35 
8V6 C6    H6    SING N N 36 
8V6 O12   H7    SING N N 37 
8V6 "C9'" H8    SING N N 38 
8V6 "C9'" H9    SING N N 39 
8V6 "C9'" H10   SING N N 40 
8V6 "C5'" H11   SING N N 41 
8V6 "C5'" H12   SING N N 42 
8V6 "C8'" H13   SING N N 43 
8V6 "C8'" H14   SING N N 44 
8V6 "C8'" H15   SING N N 45 
8V6 O1    H16   SING N N 46 
8V6 "C7'" H17   SING N N 47 
8V6 "C7'" H18   SING N N 48 
8V6 "C7'" H19   SING N N 49 
8V6 "C3'" H20   SING N N 50 
8V6 "C4'" H21   SING N N 51 
8V6 CA1   H22   SING N N 52 
8V6 CA1   H23   SING N N 53 
8V6 CA5   H24   SING N N 54 
8V6 CA6   H25   SING N N 55 
8V6 CA0   H26   SING N N 56 
8V6 CA0   H27   SING N N 57 
8V6 CA0   H28   SING N N 58 
8V6 CA8   H29   SING N N 59 
8V6 CA9   H30   SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8V6 InChI            InChI                1.03  "InChI=1S/C25H30O4/c1-18-8-10-21(11-9-18)7-6-14-29-22-16-20(3)25(28,24(4,5)17-22)13-12-19(2)15-23(26)27/h8-13,15-16,22,28H,14,17H2,1-5H3,(H,26,27)/b13-12+,19-15-/t22-,25-/m1/s1" 
8V6 InChIKey         InChI                1.03  WPPIXXDTHHCJMC-CRNWAGJPSA-N                                                                                                                                                       
8V6 SMILES_CANONICAL CACTVS               3.385 "Cc1ccc(cc1)C#CCO[C@H]2CC(C)(C)[C@@](O)(\C=C\C(C)=C/C(O)=O)C(=C2)C"                                                                                                               
8V6 SMILES           CACTVS               3.385 "Cc1ccc(cc1)C#CCO[CH]2CC(C)(C)[C](O)(C=CC(C)=CC(O)=O)C(=C2)C"                                                                                                                     
8V6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1ccc(cc1)C#CCO[C@H]2CC([C@](C(=C2)C)(/C=C/C(=C\C(=O)O)/C)O)(C)C"                                                                                                               
8V6 SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1ccc(cc1)C#CCOC2CC(C(C(=C2)C)(C=CC(=CC(=O)O)C)O)(C)C"                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
8V6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{Z},4~{E})-3-methyl-5-[(1~{S},4~{S})-2,6,6-trimethyl-4-[3-(4-methylphenyl)prop-2-ynoxy]-1-oxidanyl-cyclohex-2-en-1-yl]penta-2,4-dienoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8V6 "Create component" 2017-10-03 PDBJ 
8V6 "Initial release"  2018-04-18 RCSB 
# 
