data_7D6
#

_chem_comp.id                                   7D6
_chem_comp.name                                 "(S)-orteronel"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H17 N3 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "6-[(7S)-7-hydroxy-6,7-dihydro-5H-pyrrolo[1,2-c]imidazol-7-yl]-N-methylnaphthalene-2-carboxamide"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-03-16
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       307.346
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    7D6
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5IRQ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7D6  C10   C1   C  0  1  Y  N  N   3.798  -21.992  22.652   0.597   2.141   0.517  C10   7D6   1  
7D6  N12   N1   N  0  1  N  N  N   3.209  -23.927  27.533   5.687  -1.170  -0.237  N12   7D6   2  
7D6  C15   C2   C  0  1  N  N  N   1.871  -20.175  19.032  -3.306   0.795  -1.665  C15   7D6   3  
7D6  C21   C3   C  0  1  Y  N  N   4.783  -22.364  18.261  -3.375  -1.128   1.551  C21   7D6   4  
7D6  C22   C4   C  0  1  N  N  N   3.394  -24.271  28.908   7.147  -1.155  -0.117  C22   7D6   5  
7D6  C01   C5   C  0  1  Y  N  N   1.799  -23.729  25.365   3.499  -0.091  -0.034  C01   7D6   6  
7D6  C02   C6   C  0  1  Y  N  N   0.648  -24.047  24.665   2.849  -1.252  -0.490  C02   7D6   7  
7D6  C03   C7   C  0  1  Y  N  N   0.532  -23.681  23.271   1.498  -1.291  -0.611  C03   7D6   8  
7D6  C04   C8   C  0  1  Y  N  N   1.592  -22.999  22.627   0.728  -0.161  -0.277  C04   7D6   9  
7D6  C05   C9   C  0  1  Y  N  N   2.721  -22.685  23.311   1.372   1.015   0.185  C05   7D6  10  
7D6  C06   C10  C  0  1  Y  N  N   2.840  -23.060  24.733   2.770   1.037   0.303  C06   7D6  11  
7D6  C07   C11  C  0  1  Y  N  N   1.474  -22.649  21.283  -0.672  -0.177  -0.394  C07   7D6  12  
7D6  C08   C12  C  0  1  Y  N  N   2.537  -21.967  20.623  -1.390   0.927  -0.052  C08   7D6  13  
7D6  C09   C13  C  0  1  Y  N  N   3.682  -21.642  21.316  -0.758   2.085   0.396  C09   7D6  14  
7D6  C11   C14  C  0  1  N  N  N   1.944  -24.121  26.880   4.972  -0.075   0.088  C11   7D6  15  
7D6  O13   O1   O  0  1  N  N  N   0.995  -24.585  27.481   5.538   0.925   0.482  O13   7D6  16  
7D6  C14   C15  C  0  1  N  N  S   2.347  -21.596  19.136  -2.892   0.904  -0.180  C14   7D6  17  
7D6  C16   C16  C  0  1  N  N  N   2.386  -19.765  17.572  -4.561  -0.100  -1.584  C16   7D6  18  
7D6  N17   N2   N  0  1  Y  N  N   3.668  -20.587  17.457  -4.401  -0.899  -0.361  N17   7D6  19  
7D6  C18   C17  C  0  1  Y  N  N   3.560  -21.555  18.354  -3.458  -0.345   0.458  C18   7D6  20  
7D6  C19   C18  C  0  1  Y  N  N   4.877  -20.725  16.815  -4.863  -2.009   0.260  C19   7D6  21  
7D6  N20   N3   N  0  1  Y  N  N   5.532  -21.792  17.304  -4.246  -2.138   1.402  N20   7D6  22  
7D6  O23   O2   O  0  1  N  N  N   1.421  -22.478  18.535  -3.461   2.073   0.413  O23   7D6  23  
7D6  H101  H1   H  0  0  N  N  N   4.696  -21.745  23.199   1.073   3.043   0.870  H101  7D6  24  
7D6  H121  H2   H  0  0  N  N  N   3.974  -23.544  27.016   5.235  -1.969  -0.552  H121  7D6  25  
7D6  H152  H3   H  0  0  N  N  N   2.325  -19.542  19.809  -3.553   1.775  -2.073  H152  7D6  26  
7D6  H151  H4   H  0  0  N  N  N   0.775  -20.113  19.102  -2.523   0.316  -2.253  H151  7D6  27  
7D6  H211  H5   H  0  0  N  N  N   5.029  -23.240  18.843  -2.723  -0.971   2.397  H211  7D6  28  
7D6  H221  H6   H  0  0  N  N  N   4.428  -24.044  29.207   7.556  -0.373  -0.757  H221  7D6  29  
7D6  H222  H7   H  0  0  N  N  N   2.697  -23.689  29.528   7.423  -0.958   0.919  H222  7D6  30  
7D6  H223  H8   H  0  0  N  N  N   3.199  -25.345  29.047   7.547  -2.121  -0.423  H223  7D6  31  
7D6  H021  H9   H  0  0  N  N  N  -0.160  -24.566  25.158   3.433  -2.123  -0.748  H021  7D6  32  
7D6  H031  H10  H  0  0  N  N  N  -0.364  -23.928  22.721   1.013  -2.189  -0.963  H031  7D6  33  
7D6  H061  H11  H  0  0  N  N  N   3.737  -22.814  25.283   3.272   1.926   0.654  H061  7D6  34  
7D6  H071  H12  H  0  0  N  N  N   0.574  -22.896  20.740  -1.176  -1.066  -0.745  H071  7D6  35  
7D6  H091  H13  H  0  0  N  N  N   4.485  -21.117  20.821  -1.351   2.951   0.651  H091  7D6  36  
7D6  H161  H14  H  0  0  N  N  N   2.593  -18.687  17.508  -5.459   0.515  -1.517  H161  7D6  37  
7D6  H162  H15  H  0  0  N  N  N   1.658  -20.045  16.796  -4.616  -0.751  -2.456  H162  7D6  38  
7D6  H191  H16  H  0  0  N  N  N   5.244  -20.074  16.036  -5.618  -2.678  -0.126  H191  7D6  39  
7D6  H231  H17  H  0  0  N  N  N   0.625  -22.502  19.052  -3.233   2.192   1.345  H231  7D6  40  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7D6  C19  N20   DOUB  Y  N   1  
7D6  C19  N17   SING  Y  N   2  
7D6  N20  C21   SING  Y  N   3  
7D6  N17  C16   SING  N  N   4  
7D6  N17  C18   SING  Y  N   5  
7D6  C16  C15   SING  N  N   6  
7D6  C21  C18   DOUB  Y  N   7  
7D6  C18  C14   SING  N  N   8  
7D6  O23  C14   SING  N  N   9  
7D6  C15  C14   SING  N  N  10  
7D6  C14  C08   SING  N  N  11  
7D6  C08  C07   DOUB  Y  N  12  
7D6  C08  C09   SING  Y  N  13  
7D6  C07  C04   SING  Y  N  14  
7D6  C09  C10   DOUB  Y  N  15  
7D6  C04  C03   DOUB  Y  N  16  
7D6  C04  C05   SING  Y  N  17  
7D6  C10  C05   SING  Y  N  18  
7D6  C03  C02   SING  Y  N  19  
7D6  C05  C06   DOUB  Y  N  20  
7D6  C02  C01   DOUB  Y  N  21  
7D6  C06  C01   SING  Y  N  22  
7D6  C01  C11   SING  N  N  23  
7D6  C11  O13   DOUB  N  N  24  
7D6  C11  N12   SING  N  N  25  
7D6  N12  C22   SING  N  N  26  
7D6  C10  H101  SING  N  N  27  
7D6  N12  H121  SING  N  N  28  
7D6  C15  H152  SING  N  N  29  
7D6  C15  H151  SING  N  N  30  
7D6  C21  H211  SING  N  N  31  
7D6  C22  H221  SING  N  N  32  
7D6  C22  H222  SING  N  N  33  
7D6  C22  H223  SING  N  N  34  
7D6  C02  H021  SING  N  N  35  
7D6  C03  H031  SING  N  N  36  
7D6  C06  H061  SING  N  N  37  
7D6  C07  H071  SING  N  N  38  
7D6  C09  H091  SING  N  N  39  
7D6  C16  H161  SING  N  N  40  
7D6  C16  H162  SING  N  N  41  
7D6  C19  H191  SING  N  N  42  
7D6  O23  H231  SING  N  N  43  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7D6  SMILES            ACDLabs               12.01  "c2c1c(ccc(C(NC)=O)c1)cc(c2)C4(CCn3c4cnc3)O"  
7D6  InChI             InChI                 1.03   "InChI=1S/C18H17N3O2/c1-19-17(22)14-3-2-13-9-15(5-4-12(13)8-14)18(23)6-7-21-11-20-10-16(18)21/h2-5,8-11,23H,6-7H2,1H3,(H,19,22)/t18-/m0/s1"  
7D6  InChIKey          InChI                 1.03   OZPFIJIOIVJZMN-SFHVURJKSA-N  
7D6  SMILES_CANONICAL  CACTVS                3.385  "CNC(=O)c1ccc2cc(ccc2c1)[C@@]3(O)CCn4cncc34"  
7D6  SMILES            CACTVS                3.385  "CNC(=O)c1ccc2cc(ccc2c1)[C]3(O)CCn4cncc34"  
7D6  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "CNC(=O)c1ccc2cc(ccc2c1)[C@]3(CCn4c3cnc4)O"  
7D6  SMILES            "OpenEye OEToolkits"  2.0.4  "CNC(=O)c1ccc2cc(ccc2c1)C3(CCn4c3cnc4)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
7D6  "SYSTEMATIC NAME"  ACDLabs               12.01  "6-[(7S)-7-hydroxy-6,7-dihydro-5H-pyrrolo[1,2-c]imidazol-7-yl]-N-methylnaphthalene-2-carboxamide"  
7D6  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.4  "~{N}-methyl-6-[(7~{S})-7-oxidanyl-5,6-dihydropyrrolo[1,2-c]imidazol-7-yl]naphthalene-2-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7D6  "Create component"  2016-03-16  RCSB  
7D6  "Initial release"   2017-03-15  RCSB  
7D6  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     7D6
_pdbx_chem_comp_synonyms.name        "6-[(7S)-7-hydroxy-6,7-dihydro-5H-pyrrolo[1,2-c]imidazol-7-yl]-N-methylnaphthalene-2-carboxamide"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
