data_6S6
# 
_chem_comp.id                                    6S6 
_chem_comp.name                                  "(1~{S},2~{R},3~{S},4~{S},5~{S},6~{R})-2-(8-azidooctylamino)-3,4,5,6-tetrakis(oxidanyl)cyclohexane-1-carboxylic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H28 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-06-13 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        360.406 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6S6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5L9Y 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6S6 C1  C1  C 0  1 N N S N N N -13.260 2.438  19.526 3.436   1.288  -1.209 C1  6S6 1  
6S6 C2  C2  C 0  1 N N S N N N -13.531 2.962  18.099 3.827   1.867  0.153  C2  6S6 2  
6S6 C3  C3  C 0  1 N N S N N N -13.110 4.410  17.968 4.986   1.056  0.737  C3  6S6 3  
6S6 C4  C4  C 0  1 N N R N N N -13.918 5.248  18.966 4.554   -0.402 0.908  C4  6S6 4  
6S6 C5  C5  C 0  1 N N S N N N -13.638 4.775  20.403 4.162   -0.980 -0.453 C5  6S6 5  
6S6 C6  C6  C 0  1 N N R N N N -13.958 3.285  20.562 3.003   -0.170 -1.038 C6  6S6 6  
6S6 C8  C7  C 0  1 N N N N N N -14.366 5.609  21.439 3.736   -2.416 -0.285 C8  6S6 7  
6S6 C14 C8  C 0  1 N N N N N N -15.826 2.053  21.586 0.594   -0.013 -0.854 C14 6S6 8  
6S6 C15 C9  C 0  1 N N N N N N -17.356 1.884  21.663 -0.580  -0.089 0.124  C15 6S6 9  
6S6 C16 C10 C 0  1 N N N N N N -17.704 1.049  22.895 -1.890  0.142  -0.632 C16 6S6 10 
6S6 C17 C11 C 0  1 N N N N N N -19.130 1.320  23.371 -3.063  0.066  0.347  C17 6S6 11 
6S6 C18 C12 C 0  1 N N N N N N -19.605 0.360  24.463 -4.373  0.298  -0.409 C18 6S6 12 
6S6 C19 C13 C 0  1 N N N N N N -21.131 0.464  24.592 -5.547  0.222  0.569  C19 6S6 13 
6S6 C20 C14 C 0  1 N N N N N N -21.733 -0.443 25.670 -6.857  0.453  -0.187 C20 6S6 14 
6S6 C21 C15 C 0  1 N N N N N N -23.268 -0.376 25.685 -8.031  0.377  0.792  C21 6S6 15 
6S6 N7  N1  N 0  1 N N N N N N -15.416 2.985  20.507 1.852   -0.235 -0.128 N7  6S6 16 
6S6 O9  O1  O 0  1 N N N N N N -13.739 6.523  21.999 4.596   -3.317 0.215  O9  6S6 17 
6S6 O10 O2  O 0  1 N N N N N N -15.590 5.409  21.724 2.620   -2.756 -0.600 O10 6S6 18 
6S6 O11 O3  O 0  1 N N N N N N -13.503 6.630  18.824 5.636   -1.159 1.454  O11 6S6 19 
6S6 O12 O4  O 0  1 N N N N N N -13.270 4.971  16.642 5.352   1.596  2.009  O12 6S6 20 
6S6 O13 O5  O 0  1 N N N N N N -12.892 2.134  17.133 4.231   3.228  -0.007 O13 6S6 21 
6S6 N22 N2  N 0  1 N N N N N N -23.909 -1.570 26.216 -9.285  0.599  0.068  N22 6S6 22 
6S6 N23 N3  N 1  1 N N N N N N -23.718 -1.923 27.309 -10.079 -0.196 0.064  N23 6S6 23 
6S6 N24 N4  N -1 1 N N N N N N -23.526 -2.277 28.403 -10.874 -0.991 0.059  N24 6S6 24 
6S6 O1  O6  O 0  1 N Y N N N N -11.870 2.471  19.899 4.556   1.352  -2.093 O1  6S6 25 
6S6 H1  H1  H 0  1 N N N N N N -13.640 1.408  19.595 2.610   1.865  -1.625 H1  6S6 26 
6S6 H2  H2  H 0  1 N N N N N N -14.618 2.917  17.938 2.973   1.818  0.828  H2  6S6 27 
6S6 H3  H3  H 0  1 N N N N N N -12.050 4.481  18.255 5.840   1.105  0.062  H3  6S6 28 
6S6 H4  H4  H 0  1 N N N N N N -14.991 5.142  18.749 3.699   -0.451 1.583  H4  6S6 29 
6S6 H5  H5  H 0  1 N N N N N N -12.559 4.897  20.581 5.016   -0.931 -1.128 H5  6S6 30 
6S6 H6  H6  H 0  1 N N N N N N -13.587 2.974  21.550 2.724   -0.582 -2.007 H6  6S6 31 
6S6 H7  H7  H 0  1 N N N N N N -15.371 1.070  21.396 0.477   -0.779 -1.621 H7  6S6 32 
6S6 H8  H8  H 0  1 N N N N N N -15.465 2.445  22.548 0.614   0.971  -1.322 H8  6S6 33 
6S6 H9  H9  H 0  1 N N N N N N -17.833 2.872  21.741 -0.599  -1.073 0.593  H9  6S6 34 
6S6 H10 H10 H 0  1 N N N N N N -17.716 1.373  20.758 -0.463  0.676  0.892  H10 6S6 35 
6S6 H11 H11 H 0  1 N N N N N N -17.608 -0.017 22.643 -1.870  1.126  -1.100 H11 6S6 36 
6S6 H12 H12 H 0  1 N N N N N N -17.003 1.299  23.705 -2.006  -0.623 -1.399 H12 6S6 37 
6S6 H13 H13 H 0  1 N N N N N N -19.176 2.346  23.766 -3.083  -0.918 0.815  H13 6S6 38 
6S6 H14 H14 H 0  1 N N N N N N -19.807 1.229  22.509 -2.947  0.831  1.114  H14 6S6 39 
6S6 H15 H15 H 0  1 N N N N N N -19.327 -0.670 24.195 -4.353  1.282  -0.877 H15 6S6 40 
6S6 H16 H16 H 0  1 N N N N N N -19.135 0.629  25.420 -4.490  -0.468 -1.177 H16 6S6 41 
6S6 H17 H17 H 0  1 N N N N N N -21.386 1.506  24.836 -5.567  -0.762 1.038  H17 6S6 42 
6S6 H18 H18 H 0  1 N N N N N N -21.578 0.193  23.624 -5.430  0.987  1.337  H18 6S6 43 
6S6 H19 H19 H 0  1 N N N N N N -21.424 -1.481 25.474 -6.837  1.437  -0.655 H19 6S6 44 
6S6 H20 H20 H 0  1 N N N N N N -21.354 -0.127 26.653 -6.974  -0.312 -0.954 H20 6S6 45 
6S6 H21 H21 H 0  1 N N N N N N -23.570 0.482  26.303 -8.050  -0.607 1.260  H21 6S6 46 
6S6 H22 H22 H 0  1 N N N N N N -23.617 -0.226 24.653 -7.914  1.143  1.559  H22 6S6 47 
6S6 H23 H23 H 0  1 N N N N N N -15.926 3.839  20.605 1.833   -1.114 0.368  H23 6S6 48 
6S6 H25 H25 H 0  1 N N N N N N -14.312 6.975  22.607 4.278   -4.226 0.304  H25 6S6 49 
6S6 H26 H26 H 0  1 N N N N N N -13.990 7.172  19.433 5.937   -0.847 2.318  H26 6S6 50 
6S6 H27 H27 H 0  1 N N N N N N -12.985 5.877  16.645 5.637   2.520  1.976  H27 6S6 51 
6S6 H28 H28 H 0  1 N N N N N N -13.180 1.236  17.245 4.494   3.659  0.818  H28 6S6 52 
6S6 H30 H30 H 0  1 N N N N N N -11.771 2.138  20.783 4.884   2.248  -2.248 H30 6S6 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6S6 O12 C3  SING N N 1  
6S6 O13 C2  SING N N 2  
6S6 C3  C2  SING N N 3  
6S6 C3  C4  SING N N 4  
6S6 C2  C1  SING N N 5  
6S6 O11 C4  SING N N 6  
6S6 C4  C5  SING N N 7  
6S6 C1  C6  SING N N 8  
6S6 C5  C6  SING N N 9  
6S6 C5  C8  SING N N 10 
6S6 N7  C6  SING N N 11 
6S6 N7  C14 SING N N 12 
6S6 C8  O10 DOUB N N 13 
6S6 C8  O9  SING N N 14 
6S6 C14 C15 SING N N 15 
6S6 C15 C16 SING N N 16 
6S6 C16 C17 SING N N 17 
6S6 C17 C18 SING N N 18 
6S6 C18 C19 SING N N 19 
6S6 C19 C20 SING N N 20 
6S6 C20 C21 SING N N 21 
6S6 C21 N22 SING N N 22 
6S6 N22 N23 DOUB N N 23 
6S6 N23 N24 DOUB N N 24 
6S6 C1  O1  SING N N 25 
6S6 C1  H1  SING N N 26 
6S6 C2  H2  SING N N 27 
6S6 C3  H3  SING N N 28 
6S6 C4  H4  SING N N 29 
6S6 C5  H5  SING N N 30 
6S6 C6  H6  SING N N 31 
6S6 C14 H7  SING N N 32 
6S6 C14 H8  SING N N 33 
6S6 C15 H9  SING N N 34 
6S6 C15 H10 SING N N 35 
6S6 C16 H11 SING N N 36 
6S6 C16 H12 SING N N 37 
6S6 C17 H13 SING N N 38 
6S6 C17 H14 SING N N 39 
6S6 C18 H15 SING N N 40 
6S6 C18 H16 SING N N 41 
6S6 C19 H17 SING N N 42 
6S6 C19 H18 SING N N 43 
6S6 C20 H19 SING N N 44 
6S6 C20 H20 SING N N 45 
6S6 C21 H21 SING N N 46 
6S6 C21 H22 SING N N 47 
6S6 N7  H23 SING N N 48 
6S6 O9  H25 SING N N 49 
6S6 O11 H26 SING N N 50 
6S6 O12 H27 SING N N 51 
6S6 O13 H28 SING N N 52 
6S6 O1  H30 SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6S6 InChI            InChI                1.03  "InChI=1S/C15H28N4O6/c16-19-18-8-6-4-2-1-3-5-7-17-10-9(15(24)25)11(20)13(22)14(23)12(10)21/h9-14,17,20-23H,1-8H2,(H,24,25)/t9-,10+,11+,12-,13-,14-/m0/s1" 
6S6 InChIKey         InChI                1.03  HMWYQBVREFKFKY-KTEZLCCFSA-N                                                                                                                               
6S6 SMILES_CANONICAL CACTVS               3.385 "O[C@@H]1[C@@H](O)[C@H](O)[C@H]([C@@H](NCCCCCCCCN=[N+]=[N-])[C@@H]1O)C(O)=O"                                                                              
6S6 SMILES           CACTVS               3.385 "O[CH]1[CH](O)[CH](O)[CH]([CH](NCCCCCCCCN=[N+]=[N-])[CH]1O)C(O)=O"                                                                                        
6S6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "C(CCCCN=[N+]=[N-])CCCN[C@@H]1[C@@H]([C@H]([C@@H]([C@H]([C@H]1O)O)O)O)C(=O)O"                                                                             
6S6 SMILES           "OpenEye OEToolkits" 2.0.5 "C(CCCCN=[N+]=[N-])CCCNC1C(C(C(C(C1O)O)O)O)C(=O)O"                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           6S6 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.5 
_pdbx_chem_comp_identifier.identifier        "(1~{S},2~{R},3~{S},4~{S},5~{S},6~{R})-2-(8-azidooctylamino)-3,4,5,6-tetrakis(oxidanyl)cyclohexane-1-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6S6 "Create component" 2016-06-13 EBI  
6S6 "Initial release"  2017-05-31 RCSB 
6S6 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            6S6 
_pdbx_chem_comp_pcm.modified_residue_id                GLU 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OE2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
