data_6C6
# 
_chem_comp.id                                    6C6 
_chem_comp.name                                  
; N-cyclopentyladenosine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H22 N5 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-07-13 
_chem_comp.pdbx_modified_date                    2012-12-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        415.338 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6C6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4FYI 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6C6 C65   C65 C 0 1 N N N 26.001 16.950 11.301 -6.926 0.097  -0.888 C65 6C6 1  
6C6 C64   C64 C 0 1 N N N 25.395 18.282 10.829 -8.313 0.736  -1.079 C64 6C6 2  
6C6 C63   C63 C 0 1 N N N 26.497 19.002 10.047 -8.387 1.929  -0.105 C63 6C6 3  
6C6 C62   C62 C 0 1 N N N 27.802 18.442 10.629 -6.906 2.306  0.148  C62 6C6 4  
6C6 C61   C61 C 0 1 N N N 27.499 16.970 10.940 -6.205 0.925  0.195  C61 6C6 5  
6C6 N6    N6  N 0 1 N N N 27.702 16.135 9.737  -4.781 1.061  -0.125 N6  6C6 6  
6C6 C6    C6  C 0 1 Y N N 28.854 15.537 9.374  -3.875 0.124  0.339  C6  6C6 7  
6C6 N1    N1  N 0 1 Y N N 28.842 14.753 8.275  -4.280 -0.909 1.072  N1  6C6 8  
6C6 C2    C2  C 0 1 Y N N 29.930 14.127 7.846  -3.422 -1.808 1.519  C2  6C6 9  
6C6 N3    N3  N 0 1 Y N N 31.085 14.231 8.490  -2.131 -1.738 1.270  N3  6C6 10 
6C6 C4    C4  C 0 1 Y N N 31.171 14.995 9.597  -1.634 -0.741 0.546  C4  6C6 11 
6C6 C5    C5  C 0 1 Y N N 30.053 15.666 10.073 -2.507 0.238  0.042  C5  6C6 12 
6C6 N7    N7  N 0 1 Y N N 30.430 16.324 11.162 -1.754 1.122  -0.656 N7  6C6 13 
6C6 C8    C8  C 0 1 Y N N 31.725 16.082 11.370 -0.506 0.754  -0.618 C8  6C6 14 
6C6 N9    N9  N 0 1 Y N N 32.185 15.269 10.416 -0.379 -0.386 0.119  N9  6C6 15 
6C6 "C1'" C1* C 0 1 N N R 33.578 14.750 10.253 0.866  -1.108 0.391  C1* 6C6 16 
6C6 "O4'" O4* O 0 1 N N N 34.480 15.218 11.287 1.997  -0.216 0.286  O4* 6C6 17 
6C6 "C2'" C2* C 0 1 N N R 34.135 15.239 8.901  1.110  -2.184 -0.690 C2* 6C6 18 
6C6 "O2'" O2* O 0 1 N N N 34.725 14.146 8.156  0.688  -3.467 -0.223 O2* 6C6 19 
6C6 "C3'" C3* C 0 1 N N S 35.161 16.326 9.246  2.640  -2.162 -0.903 C3* 6C6 20 
6C6 "O3'" O3* O 0 1 N N N 36.461 16.063 8.667  3.210  -3.430 -0.575 O3* 6C6 21 
6C6 "C4'" C4* C 0 1 N N R 35.277 16.319 10.777 3.139  -1.075 0.074  C4* 6C6 22 
6C6 "C5'" C5* C 0 1 N N N 34.749 17.658 11.311 4.291  -0.284 -0.552 C5* 6C6 23 
6C6 "O5'" O5* O 0 1 N N N 34.649 17.659 12.711 4.814  0.636  0.409  O5* 6C6 24 
6C6 PA    PA  P 0 1 N N N 34.034 18.942 13.524 6.037  1.633  0.091  PA  6C6 25 
6C6 OA2   OA2 O 0 1 N N N 34.179 18.563 15.028 7.372  0.775  -0.179 OA2 6C6 26 
6C6 OA3   OA3 O 0 1 N N N 32.503 18.935 13.145 5.718  2.440  -1.107 OA3 6C6 27 
6C6 OA1   OA1 O 0 1 N N N 34.780 20.184 13.147 6.273  2.610  1.349  OA1 6C6 28 
6C6 H1    H1  H 0 1 N N N 25.878 16.846 12.389 -7.033 -0.936 -0.559 H1  6C6 29 
6C6 H2    H2  H 0 1 N N N 25.503 16.110 10.794 -6.366 0.136  -1.822 H2  6C6 30 
6C6 H3    H3  H 0 1 N N N 25.084 18.887 11.694 -8.425 1.085  -2.106 H3  6C6 31 
6C6 H4    H4  H 0 1 N N N 24.526 18.097 10.180 -9.093 0.012  -0.844 H4  6C6 32 
6C6 H5    H5  H 0 1 N N N 26.437 20.090 10.201 -8.920 2.763  -0.562 H5  6C6 33 
6C6 H6    H6  H 0 1 N N N 26.422 18.779 8.973  -8.869 1.632  0.827  H6  6C6 34 
6C6 H7    H7  H 0 1 N N N 28.618 18.522 9.896  -6.515 2.908  -0.672 H7  6C6 35 
6C6 H8    H8  H 0 1 N N N 28.079 18.982 11.546 -6.796 2.828  1.098  H8  6C6 36 
6C6 H9    H9  H 0 1 N N N 28.107 16.617 11.786 -6.334 0.465  1.175  H9  6C6 37 
6C6 H10   H10 H 0 1 N N N 27.457 16.722 8.966  -4.474 1.808  -0.662 H10 6C6 38 
6C6 H11   H11 H 0 1 N N N 29.874 13.520 6.954  -3.793 -2.631 2.111  H11 6C6 39 
6C6 H12   H12 H 0 1 N N N 32.311 16.482 12.184 0.309  1.279  -1.093 H12 6C6 40 
6C6 H13   H13 H 0 1 N N N 33.556 13.650 10.246 0.831  -1.563 1.381  H13 6C6 41 
6C6 H14   H14 H 0 1 N N N 33.316 15.692 8.323  0.592  -1.923 -1.613 H14 6C6 42 
6C6 H15   H15 H 0 1 N N N 34.058 13.497 7.963  0.873  -4.190 -0.838 H15 6C6 43 
6C6 H16   H16 H 0 1 N N N 34.781 17.304 8.914  2.879  -1.890 -1.931 H16 6C6 44 
6C6 H17   H17 H 0 1 N N N 37.061 16.759 8.906  2.885  -4.161 -1.119 H17 6C6 45 
6C6 H18   H18 H 0 1 N N N 36.332 16.200 11.064 3.455  -1.526 1.015  H18 6C6 46 
6C6 H19   H19 H 0 1 N N N 35.436 18.460 11.003 5.077  -0.972 -0.862 H19 6C6 47 
6C6 H20   H20 H 0 1 N N N 33.753 17.844 10.883 3.925  0.265  -1.419 H20 6C6 48 
6C6 H21   H21 H 0 1 N N N 33.319 18.408 15.400 7.642  0.221  0.566  H21 6C6 49 
6C6 H22   H22 H 0 1 N N N 34.187 20.793 12.723 6.997  3.239  1.228  H22 6C6 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6C6 C2    N1    DOUB Y N 1  
6C6 C2    N3    SING Y N 2  
6C6 "O2'" "C2'" SING N N 3  
6C6 N1    C6    SING Y N 4  
6C6 N3    C4    DOUB Y N 5  
6C6 "O3'" "C3'" SING N N 6  
6C6 "C2'" "C3'" SING N N 7  
6C6 "C2'" "C1'" SING N N 8  
6C6 "C3'" "C4'" SING N N 9  
6C6 C6    N6    SING N N 10 
6C6 C6    C5    DOUB Y N 11 
6C6 C4    C5    SING Y N 12 
6C6 C4    N9    SING Y N 13 
6C6 N6    C61   SING N N 14 
6C6 C63   C62   SING N N 15 
6C6 C63   C64   SING N N 16 
6C6 C5    N7    SING Y N 17 
6C6 "C1'" N9    SING N N 18 
6C6 "C1'" "O4'" SING N N 19 
6C6 N9    C8    SING Y N 20 
6C6 C62   C61   SING N N 21 
6C6 "C4'" "O4'" SING N N 22 
6C6 "C4'" "C5'" SING N N 23 
6C6 C64   C65   SING N N 24 
6C6 C61   C65   SING N N 25 
6C6 N7    C8    DOUB Y N 26 
6C6 "C5'" "O5'" SING N N 27 
6C6 "O5'" PA    SING N N 28 
6C6 OA3   PA    DOUB N N 29 
6C6 OA1   PA    SING N N 30 
6C6 PA    OA2   SING N N 31 
6C6 C65   H1    SING N N 32 
6C6 C65   H2    SING N N 33 
6C6 C64   H3    SING N N 34 
6C6 C64   H4    SING N N 35 
6C6 C63   H5    SING N N 36 
6C6 C63   H6    SING N N 37 
6C6 C62   H7    SING N N 38 
6C6 C62   H8    SING N N 39 
6C6 C61   H9    SING N N 40 
6C6 N6    H10   SING N N 41 
6C6 C2    H11   SING N N 42 
6C6 C8    H12   SING N N 43 
6C6 "C1'" H13   SING N N 44 
6C6 "C2'" H14   SING N N 45 
6C6 "O2'" H15   SING N N 46 
6C6 "C3'" H16   SING N N 47 
6C6 "O3'" H17   SING N N 48 
6C6 "C4'" H18   SING N N 49 
6C6 "C5'" H19   SING N N 50 
6C6 "C5'" H20   SING N N 51 
6C6 OA2   H21   SING N N 52 
6C6 OA1   H22   SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6C6 SMILES           ACDLabs              12.01 "O=P(O)(O)OCC4OC(n2cnc1c(ncnc12)NC3CCCC3)C(O)C4O"                                                                                                                                        
6C6 InChI            InChI                1.03  "InChI=1S/C15H22N5O7P/c21-11-9(5-26-28(23,24)25)27-15(12(11)22)20-7-18-10-13(16-6-17-14(10)20)19-8-3-1-2-4-8/h6-9,11-12,15,21-22H,1-5H2,(H,16,17,19)(H2,23,24,25)/t9-,11-,12-,15-/m1/s1" 
6C6 InChIKey         InChI                1.03  ZLXWBMMFOMQXRH-SDBHATRESA-N                                                                                                                                                              
6C6 SMILES_CANONICAL CACTVS               3.370 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3c(NC4CCCC4)ncnc23"                                                                                                                   
6C6 SMILES           CACTVS               3.370 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)n2cnc3c(NC4CCCC4)ncnc23"                                                                                                                          
6C6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)NC4CCCC4"                                                                                                                
6C6 SMILES           "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O)NC4CCCC4"                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6C6 "SYSTEMATIC NAME" ACDLabs              12.01 
;N-cyclopentyladenosine 5'-(dihydrogen phosphate)
;
6C6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-[6-(cyclopentylamino)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6C6 "Create component" 2012-07-13 RCSB 
6C6 "Initial release"  2012-12-28 RCSB 
# 
