data_5R6
# 
_chem_comp.id                                    5R6 
_chem_comp.name                                  "Nogalamycin RO" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C35 H41 N O14" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-11-13 
_chem_comp.pdbx_modified_date                    2016-05-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        699.698 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5R6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5EQU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5R6 CAR C1  C 0 1 N N N -4.173  29.020 -3.819 -5.054 3.269  0.769  CAR 5R6 1  
5R6 CBN C2  C 0 1 N N S -3.542  29.661 -4.979 -5.197 3.605  -0.718 CBN 5R6 2  
5R6 OAL O1  O 0 1 N N N -3.391  28.661 -6.051 -5.184 5.024  -0.891 OAL 5R6 3  
5R6 CBR C3  C 0 1 N N R -2.261  30.453 -4.564 -6.524 3.039  -1.233 CBR 5R6 4  
5R6 OAM O2  O 0 1 N N N -2.659  31.815 -4.676 -6.635 3.284  -2.637 OAM 5R6 5  
5R6 CBM C4  C 0 1 N N S -1.802  30.300 -3.064 -6.562 1.531  -0.973 CBM 5R6 6  
5R6 CAB C5  C 0 1 N N N -0.394  30.802 -2.779 -7.909 0.967  -1.429 CAB 5R6 7  
5R6 OAW O3  O 0 1 N N N -1.909  28.941 -2.592 -6.392 1.286  0.425  OAW 5R6 8  
5R6 CBP C6  C 0 1 N N R -3.177  28.259 -2.914 -5.148 1.752  0.952  CBP 5R6 9  
5R6 OAX O4  O 0 1 N N N -3.929  27.902 -1.729 -4.070 1.120  0.259  OAX 5R6 10 
5R6 CBQ C7  C 0 1 N N S -4.258  28.648 -0.520 -3.883 -0.254 0.604  CBQ 5R6 11 
5R6 CAT C8  C 0 1 N N N -4.277  30.200 -0.518 -4.641 -1.130 -0.392 CAT 5R6 12 
5R6 CBW C9  C 0 1 N N S -4.399  30.693 0.950  -4.256 -2.593 -0.138 CBW 5R6 13 
5R6 CAE C10 C 0 1 N N N -4.600  32.222 1.026  -5.168 -3.514 -0.951 CAE 5R6 14 
5R6 OAO O5  O 0 1 N N N -3.165  30.423 1.568  -4.388 -2.891 1.253  OAO 5R6 15 
5R6 CBF C11 C 0 1 Y N N -5.450  28.104 0.058  -2.411 -0.576 0.582  CBF 5R6 16 
5R6 CBB C12 C 0 1 Y N N -6.018  26.894 -0.394 -1.538 0.368  1.131  CBB 5R6 17 
5R6 OAK O6  O 0 1 N N N -5.445  26.277 -1.448 -2.028 1.521  1.649  OAK 5R6 18 
5R6 CBK C13 C 0 1 Y N N -7.145  26.276 0.167  -0.164 0.129  1.148  CBK 5R6 19 
5R6 CBH C14 C 0 1 N N N -7.652  25.076 -0.324 0.769  1.117  1.722  CBH 5R6 20 
5R6 OAI O7  O 0 1 N N N -7.152  24.533 -1.323 0.351  2.037  2.399  OAI 5R6 21 
5R6 CBJ C15 C 0 1 Y N N -8.762  24.500 0.323  2.215  0.977  1.465  CBJ 5R6 22 
5R6 CBA C16 C 0 1 Y N N -9.282  23.305 -0.145 3.091  2.025  1.746  CBA 5R6 23 
5R6 OAJ O8  O 0 1 N N N -8.694  22.763 -1.246 2.619  3.188  2.261  OAJ 5R6 24 
5R6 CAP C17 C 0 1 Y N N -10.353 22.710 0.451  4.454  1.874  1.495  CAP 5R6 25 
5R6 CBD C18 C 0 1 Y N N -10.994 23.289 1.529  4.943  0.697  0.973  CBD 5R6 26 
5R6 CBX C19 C 0 1 N N R -12.079 22.665 2.215  6.423  0.566  0.689  CBX 5R6 27 
5R6 CAF C20 C 0 1 N N N -11.728 21.172 2.500  7.245  1.286  1.760  CAF 5R6 28 
5R6 OAY O9  O 0 1 N N N -12.211 23.158 3.578  6.755  -0.828 0.647  OAY 5R6 29 
5R6 CBS C21 C 0 1 N N S -13.406 22.773 1.523  6.687  1.172  -0.699 CBS 5R6 30 
5R6 OAN O10 O 0 1 N N N -14.424 22.076 2.285  8.050  0.952  -1.071 OAN 5R6 31 
5R6 CBT C22 C 0 1 N N S -13.768 24.248 1.385  5.758  0.478  -1.702 CBT 5R6 32 
5R6 NBV N1  N 0 1 N N N -15.121 24.378 0.845  6.011  1.003  -3.051 NBV 5R6 33 
5R6 CAD C23 C 0 1 N N N -15.488 25.805 0.673  5.135  0.358  -4.039 CAD 5R6 34 
5R6 CAC C24 C 0 1 N N N -15.363 23.638 -0.432 5.857  2.463  -3.085 CAC 5R6 35 
5R6 CAS C25 C 0 1 N N N -13.591 25.010 2.737  6.031  -1.028 -1.679 CAS 5R6 36 
5R6 CBO C26 C 0 1 N N R -12.355 24.543 3.597  5.917  -1.578 -0.234 CBO 5R6 37 
5R6 OAV O11 O 0 1 N N N -11.115 25.041 3.084  4.570  -1.542 0.225  OAV 5R6 38 
5R6 CBE C27 C 0 1 Y N N -10.496 24.483 1.997  4.086  -0.365 0.694  CBE 5R6 39 
5R6 CBL C28 C 0 1 Y N N -9.384  25.116 1.419  2.716  -0.229 0.933  CBL 5R6 40 
5R6 CBG C29 C 0 1 N N N -8.855  26.321 1.896  1.790  -1.336 0.632  CBG 5R6 41 
5R6 OAH O12 O 0 1 N N N -9.367  26.881 2.851  2.217  -2.452 0.406  OAH 5R6 42 
5R6 CBI C30 C 0 1 Y N N -7.732  26.895 1.272  0.334  -1.073 0.610  CBI 5R6 43 
5R6 CAQ C31 C 0 1 Y N N -7.160  28.095 1.742  -0.547 -1.995 0.067  CAQ 5R6 44 
5R6 CBC C32 C 0 1 Y N N -6.032  28.717 1.167  -1.917 -1.745 0.051  CBC 5R6 45 
5R6 CBU C33 C 0 1 N N R -5.503  29.908 1.773  -2.805 -2.791 -0.572 CBU 5R6 46 
5R6 CAZ C34 C 0 1 N N N -4.839  29.530 3.035  -2.340 -4.158 -0.141 CAZ 5R6 47 
5R6 OAG O13 O 0 1 N N N -4.759  30.318 3.987  -1.950 -4.335 0.988  OAG 5R6 48 
5R6 OAU O14 O 0 1 N N N -4.180  28.299 3.090  -2.360 -5.179 -1.013 OAU 5R6 49 
5R6 CAA C35 C 0 1 N N N -3.162  28.078 4.106  -1.898 -6.467 -0.529 CAA 5R6 50 
5R6 H1  H1  H 0 1 N N N -4.665  29.798 -3.217 -4.087 3.620  1.131  H1  5R6 51 
5R6 H2  H2  H 0 1 N N N -4.927  28.306 -4.183 -5.851 3.754  1.332  H2  5R6 52 
5R6 H3  H3  H 0 1 N N N -4.252  30.416 -5.349 -4.371 3.161  -1.274 H3  5R6 53 
5R6 H4  H4  H 0 1 N N N -4.229  28.245 -6.217 -4.371 5.449  -0.586 H4  5R6 54 
5R6 H5  H5  H 0 1 N N N -1.428  30.206 -5.239 -7.352 3.519  -0.712 H5  5R6 55 
5R6 H6  H6  H 0 1 N N N -1.932  32.378 -4.439 -7.453 2.951  -3.030 H6  5R6 56 
5R6 H7  H7  H 0 1 N N N -2.488  30.919 -2.467 -5.758 1.046  -1.527 H7  5R6 57 
5R6 H8  H8  H 0 1 N N N -0.161  30.656 -1.714 -8.038 1.155  -2.495 H8  5R6 58 
5R6 H9  H9  H 0 1 N N N 0.326   30.241 -3.392 -7.935 -0.106 -1.244 H9  5R6 59 
5R6 H10 H10 H 0 1 N N N -0.330  31.872 -3.025 -8.712 1.452  -0.875 H10 5R6 60 
5R6 H11 H11 H 0 1 N N N -2.923  27.328 -3.442 -5.090 1.509  2.014  H11 5R6 61 
5R6 H12 H12 H 0 1 N N N -3.457  28.395 0.190  -4.274 -0.430 1.606  H12 5R6 62 
5R6 H13 H13 H 0 1 N N N -3.346  30.582 -0.961 -5.714 -1.003 -0.250 H13 5R6 63 
5R6 H14 H14 H 0 1 N N N -5.136  30.561 -1.103 -4.368 -0.850 -1.409 H14 5R6 64 
5R6 H15 H15 H 0 1 N N N -4.682  32.530 2.079  -5.057 -3.290 -2.012 H15 5R6 65 
5R6 H16 H16 H 0 1 N N N -3.741  32.728 0.562  -4.891 -4.552 -0.768 H16 5R6 66 
5R6 H17 H17 H 0 1 N N N -5.521  32.498 0.491  -6.204 -3.356 -0.652 H17 5R6 67 
5R6 H18 H18 H 0 1 N N N -3.296  30.311 2.502  -5.283 -2.769 1.599  H18 5R6 68 
5R6 H19 H19 H 0 1 N N N -5.932  25.489 -1.657 -2.185 1.488  2.603  H19 5R6 69 
5R6 H20 H20 H 0 1 N N N -7.973  23.315 -1.525 2.598  3.210  3.227  H20 5R6 70 
5R6 H21 H21 H 0 1 N N N -10.709 21.764 0.072  5.132  2.686  1.711  H21 5R6 71 
5R6 H22 H22 H 0 1 N N N -10.753 21.114 3.007  7.034  0.848  2.736  H22 5R6 72 
5R6 H23 H23 H 0 1 N N N -12.503 20.730 3.144  8.306  1.179  1.536  H23 5R6 73 
5R6 H24 H24 H 0 1 N N N -11.681 20.619 1.550  6.981  2.343  1.771  H24 5R6 74 
5R6 H25 H25 H 0 1 N N N -13.325 22.332 0.518  6.478  2.241  -0.680 H25 5R6 75 
5R6 H26 H26 H 0 1 N N N -14.188 21.159 2.365  8.283  1.310  -1.938 H26 5R6 76 
5R6 H27 H27 H 0 1 N N N -13.065 24.696 0.667  4.720  0.664  -1.426 H27 5R6 77 
5R6 H29 H29 H 0 1 N N N -15.309 26.346 1.614  4.094  0.548  -3.780 H29 5R6 78 
5R6 H30 H30 H 0 1 N N N -14.876 26.247 -0.127 5.344  0.765  -5.029 H30 5R6 79 
5R6 H31 H31 H 0 1 N N N -16.552 25.880 0.404  5.320  -0.716 -4.042 H31 5R6 80 
5R6 H32 H32 H 0 1 N N N -15.090 22.581 -0.301 6.566  2.919  -2.393 H32 5R6 81 
5R6 H33 H33 H 0 1 N N N -16.427 23.711 -0.702 6.050  2.826  -4.094 H33 5R6 82 
5R6 H34 H34 H 0 1 N N N -14.750 24.078 -1.233 4.842  2.729  -2.791 H34 5R6 83 
5R6 H35 H35 H 0 1 N N N -13.469 26.080 2.514  5.309  -1.535 -2.319 H35 5R6 84 
5R6 H36 H36 H 0 1 N N N -14.501 24.862 3.336  7.037  -1.217 -2.054 H36 5R6 85 
5R6 H37 H37 H 0 1 N N N -12.504 24.900 4.627  6.247  -2.617 -0.220 H37 5R6 86 
5R6 H38 H38 H 0 1 N N N -7.616  28.569 2.599  -0.167 -2.917 -0.348 H38 5R6 87 
5R6 H39 H39 H 0 1 N N N -6.322  30.609 1.991  -2.742 -2.716 -1.658 H39 5R6 88 
5R6 H40 H40 H 0 1 N N N -2.753  27.062 4.001  -0.861 -6.382 -0.201 H40 5R6 89 
5R6 H41 H41 H 0 1 N N N -2.354  28.814 3.981  -2.519 -6.785 0.309  H41 5R6 90 
5R6 H42 H42 H 0 1 N N N -3.610  28.191 5.104  -1.965 -7.202 -1.331 H42 5R6 91 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5R6 OAL CBN SING N N 1  
5R6 CBN CBR SING N N 2  
5R6 CBN CAR SING N N 3  
5R6 OAM CBR SING N N 4  
5R6 CBR CBM SING N N 5  
5R6 CAR CBP SING N N 6  
5R6 CBM CAB SING N N 7  
5R6 CBM OAW SING N N 8  
5R6 CBP OAW SING N N 9  
5R6 CBP OAX SING N N 10 
5R6 OAX CBQ SING N N 11 
5R6 OAK CBB SING N N 12 
5R6 OAI CBH DOUB N N 13 
5R6 OAJ CBA SING N N 14 
5R6 CBQ CAT SING N N 15 
5R6 CBQ CBF SING N N 16 
5R6 CAT CBW SING N N 17 
5R6 CAC NBV SING N N 18 
5R6 CBB CBF DOUB Y N 19 
5R6 CBB CBK SING Y N 20 
5R6 CBH CBK SING N N 21 
5R6 CBH CBJ SING N N 22 
5R6 CBA CBJ DOUB Y N 23 
5R6 CBA CAP SING Y N 24 
5R6 CBF CBC SING Y N 25 
5R6 CBK CBI DOUB Y N 26 
5R6 CBJ CBL SING Y N 27 
5R6 CAP CBD DOUB Y N 28 
5R6 CAD NBV SING N N 29 
5R6 NBV CBT SING N N 30 
5R6 CBW CAE SING N N 31 
5R6 CBW OAO SING N N 32 
5R6 CBW CBU SING N N 33 
5R6 CBC CAQ DOUB Y N 34 
5R6 CBC CBU SING N N 35 
5R6 CBI CAQ SING Y N 36 
5R6 CBI CBG SING N N 37 
5R6 CBT CBS SING N N 38 
5R6 CBT CAS SING N N 39 
5R6 CBL CBG SING N N 40 
5R6 CBL CBE DOUB Y N 41 
5R6 CBS CBX SING N N 42 
5R6 CBS OAN SING N N 43 
5R6 CBD CBE SING Y N 44 
5R6 CBD CBX SING N N 45 
5R6 CBU CAZ SING N N 46 
5R6 CBG OAH DOUB N N 47 
5R6 CBE OAV SING N N 48 
5R6 CBX CAF SING N N 49 
5R6 CBX OAY SING N N 50 
5R6 CAS CBO SING N N 51 
5R6 CAZ OAU SING N N 52 
5R6 CAZ OAG DOUB N N 53 
5R6 OAV CBO SING N N 54 
5R6 OAU CAA SING N N 55 
5R6 OAY CBO SING N N 56 
5R6 CAR H1  SING N N 57 
5R6 CAR H2  SING N N 58 
5R6 CBN H3  SING N N 59 
5R6 OAL H4  SING N N 60 
5R6 CBR H5  SING N N 61 
5R6 OAM H6  SING N N 62 
5R6 CBM H7  SING N N 63 
5R6 CAB H8  SING N N 64 
5R6 CAB H9  SING N N 65 
5R6 CAB H10 SING N N 66 
5R6 CBP H11 SING N N 67 
5R6 CBQ H12 SING N N 68 
5R6 CAT H13 SING N N 69 
5R6 CAT H14 SING N N 70 
5R6 CAE H15 SING N N 71 
5R6 CAE H16 SING N N 72 
5R6 CAE H17 SING N N 73 
5R6 OAO H18 SING N N 74 
5R6 OAK H19 SING N N 75 
5R6 OAJ H20 SING N N 76 
5R6 CAP H21 SING N N 77 
5R6 CAF H22 SING N N 78 
5R6 CAF H23 SING N N 79 
5R6 CAF H24 SING N N 80 
5R6 CBS H25 SING N N 81 
5R6 OAN H26 SING N N 82 
5R6 CBT H27 SING N N 83 
5R6 CAD H29 SING N N 84 
5R6 CAD H30 SING N N 85 
5R6 CAD H31 SING N N 86 
5R6 CAC H32 SING N N 87 
5R6 CAC H33 SING N N 88 
5R6 CAC H34 SING N N 89 
5R6 CAS H35 SING N N 90 
5R6 CAS H36 SING N N 91 
5R6 CBO H37 SING N N 92 
5R6 CAQ H38 SING N N 93 
5R6 CBU H39 SING N N 94 
5R6 CAA H40 SING N N 95 
5R6 CAA H41 SING N N 96 
5R6 CAA H42 SING N N 97 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5R6 InChI            InChI                1.03  
;InChI=1S/C35H41NO14/c1-12-27(39)18(38)10-20(47-12)48-19-11-34(2,45)26(33(44)46-6)13-7-14-23(29(41)22(13)19)30(42)24-17(37)8-15-31(25(24)28(14)40)49-21-9-16(36(4)5)32(43)35(15,3)50-21/h7-8,12,16,18-21,26-27,32,37-39,41,43,45H,9-11H2,1-6H3/t12-,16-,18-,19-,20-,21+,26-,27-,32-,34-,35+/m0/s1
;
5R6 InChIKey         InChI                1.03  CRWWSIJFHVGVFW-PDUKGOLSSA-N 
5R6 SMILES_CANONICAL CACTVS               3.385 "COC(=O)[C@@H]1c2cc3C(=O)c4c5O[C@H]6C[C@@H]([C@H](O)[C@](C)(O6)c5cc(O)c4C(=O)c3c(O)c2[C@H](C[C@]1(C)O)O[C@H]7C[C@H](O)[C@@H](O)[C@H](C)O7)N(C)C" 
5R6 SMILES           CACTVS               3.385 "COC(=O)[CH]1c2cc3C(=O)c4c5O[CH]6C[CH]([CH](O)[C](C)(O6)c5cc(O)c4C(=O)c3c(O)c2[CH](C[C]1(C)O)O[CH]7C[CH](O)[CH](O)[CH](C)O7)N(C)C" 
5R6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C[C@H]1[C@@H]([C@H](C[C@@H](O1)O[C@H]2C[C@]([C@@H](c3c2c(c4c(c3)C(=O)c5c(c(cc6c5O[C@H]7C[C@@H]([C@@H]([C@@]6(O7)C)O)N(C)C)O)C4=O)O)C(=O)OC)(C)O)O)O" 
5R6 SMILES           "OpenEye OEToolkits" 2.0.4 "CC1C(C(CC(O1)OC2CC(C(c3c2c(c4c(c3)C(=O)c5c(c(cc6c5OC7CC(C(C6(O7)C)O)N(C)C)O)C4=O)O)C(=O)OC)(C)O)O)O" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5R6 "Create component" 2015-11-13 EBI  
5R6 "Initial release"  2016-05-11 RCSB 
# 
