data_5D6
# 
_chem_comp.id                                    5D6 
_chem_comp.name                                  orthoformimycin 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H37 N3 O10" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-09-08 
_chem_comp.pdbx_modified_date                    2016-09-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        539.575 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5D6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5DM8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5D6 O3  O1  O 0 1 N N N 64.091 116.208 116.604 -3.269 -1.286 -0.999 O3  5D6 1  
5D6 O5  O2  O 0 1 N N N 61.558 120.004 111.898 2.421  -2.880 0.432  O5  5D6 2  
5D6 C9  C1  C 0 1 N N N 60.865 119.162 112.462 2.235  -1.684 0.304  C9  5D6 3  
5D6 C10 C2  C 0 1 N N N 59.377 119.341 112.433 3.369  -0.787 0.088  C10 5D6 4  
5D6 C20 C3  C 0 1 N N N 58.936 120.498 111.579 3.139  0.694  -0.071 C20 5D6 5  
5D6 C11 C4  C 0 1 N N N 58.609 118.467 113.005 4.623  -1.286 0.030  C11 5D6 6  
5D6 C12 C5  C 0 1 Y N N 57.205 118.165 112.860 5.774  -0.375 -0.021 C12 5D6 7  
5D6 C17 C6  C 0 1 Y N N 56.803 116.859 112.464 6.863  -0.664 -0.853 C17 5D6 8  
5D6 C16 C7  C 0 1 Y N N 55.577 116.480 112.335 7.935  0.189  -0.898 C16 5D6 9  
5D6 C15 C8  C 0 1 Y N N 54.465 117.338 112.603 7.943  1.342  -0.116 C15 5D6 10 
5D6 N2  N1  N 0 1 N N N 53.202 116.907 112.596 9.034  2.204  -0.164 N2  5D6 11 
5D6 C19 C9  C 0 1 N N N 52.770 115.979 111.566 9.045  3.417  0.657  C19 5D6 12 
5D6 C18 C10 C 0 1 N N N 52.171 117.798 113.101 10.171 1.900  -1.036 C18 5D6 13 
5D6 C14 C11 C 0 1 Y N N 54.860 118.651 112.979 6.863  1.633  0.713  C14 5D6 14 
5D6 C13 C12 C 0 1 Y N N 56.096 119.048 113.087 5.784  0.789  0.759  C13 5D6 15 
5D6 N1  N2  N 0 1 N N N 61.364 118.097 113.107 0.984  -1.186 0.362  N1  5D6 16 
5D6 C8  C13 C 0 1 N N S 62.764 117.933 113.474 -0.153 -2.085 0.579  C8  5D6 17 
5D6 C21 C14 C 0 1 N N S 63.063 116.466 113.783 -0.608 -2.672 -0.761 C21 5D6 18 
5D6 O6  O3  O 0 1 N N N 62.772 115.646 112.660 0.436  -3.475 -1.316 O6  5D6 19 
5D6 C22 C15 C 0 1 N N R 62.261 116.008 114.990 -0.925 -1.514 -1.707 C22 5D6 20 
5D6 O7  O4  O 0 1 N N N 62.260 114.584 115.077 -1.362 -2.042 -2.961 O7  5D6 21 
5D6 C3  C16 C 0 1 N N R 62.783 116.686 116.249 -2.004 -0.619 -1.147 C3  5D6 22 
5D6 C5  C17 C 0 1 N N R 63.294 118.768 114.748 -1.315 -1.304 1.187  C5  5D6 23 
5D6 N   N3  N 0 1 N N N 63.145 120.237 114.769 -0.914 -0.785 2.501  N   5D6 24 
5D6 C7  C18 C 0 1 N N N 61.793 120.701 114.926 -2.006 -0.025 3.123  C7  5D6 25 
5D6 C6  C19 C 0 1 N N N 64.037 120.937 115.692 -0.462 -1.872 3.380  C6  5D6 26 
5D6 C4  C20 C 0 1 N N S 62.952 118.199 116.122 -1.716 -0.133 0.286  C4  5D6 27 
5D6 O4  O5  O 0 1 N N N 64.115 118.465 116.908 -3.039 0.281  0.723  O4  5D6 28 
5D6 C2  C21 C 0 1 N N R 64.917 117.363 116.673 -3.987 -0.461 -0.059 C2  5D6 29 
5D6 O2  O6  O 0 1 N N N 65.598 117.267 117.863 -4.838 0.444  -0.766 O2  5D6 30 
5D6 C1  C22 C 0 1 N N S 66.913 117.785 117.837 -5.883 1.003  0.032  C1  5D6 31 
5D6 C   C23 C 0 1 N N N 67.771 116.722 117.156 -7.068 0.073  0.032  C   5D6 32 
5D6 O1  O7  O 0 1 N N N 68.863 117.018 116.689 -7.023 -0.962 -0.589 O1  5D6 33 
5D6 O   O8  O 0 1 N N N 67.222 115.502 117.086 -8.174 0.396  0.720  O   5D6 34 
5D6 C23 C24 C 0 1 N N S 67.140 117.904 119.339 -6.297 2.358  -0.546 C23 5D6 35 
5D6 O8  O9  O 0 1 N N N 68.258 117.113 119.758 -7.341 2.918  0.252  O8  5D6 36 
5D6 C24 C25 C 0 1 N N N 67.301 119.364 119.799 -5.093 3.302  -0.546 C24 5D6 37 
5D6 O9  O10 O 0 1 N N N 67.402 119.449 121.223 -5.448 4.527  -1.192 O9  5D6 38 
5D6 H1  H1  H 0 1 N N N 57.839 120.573 111.601 3.236  1.182  0.899  H1  5D6 39 
5D6 H2  H2  H 0 1 N N N 59.375 121.429 111.968 3.878  1.105  -0.759 H2  5D6 40 
5D6 H3  H3  H 0 1 N N N 59.272 120.338 110.544 2.138  0.866  -0.466 H3  5D6 41 
5D6 H4  H4  H 0 1 N N N 59.117 117.846 113.728 4.779  -2.354 0.021  H4  5D6 42 
5D6 H5  H5  H 0 1 N N N 57.578 116.135 112.257 6.857  -1.558 -1.459 H5  5D6 43 
5D6 H6  H6  H 0 1 N N N 55.381 115.469 112.010 8.775  -0.034 -1.539 H6  5D6 44 
5D6 H7  H7  H 0 1 N N N 51.708 115.734 111.715 9.493  3.197  1.625  H7  5D6 45 
5D6 H8  H8  H 0 1 N N N 52.905 116.441 110.577 9.626  4.191  0.155  H8  5D6 46 
5D6 H9  H9  H 0 1 N N N 53.370 115.059 111.626 8.022  3.767  0.802  H9  5D6 47 
5D6 H10 H10 H 0 1 N N N 52.599 118.456 113.872 9.832  1.846  -2.070 H10 5D6 48 
5D6 H11 H11 H 0 1 N N N 51.778 118.409 112.275 10.922 2.683  -0.940 H11 5D6 49 
5D6 H12 H12 H 0 1 N N N 51.355 117.204 113.538 10.605 0.943  -0.746 H12 5D6 50 
5D6 H13 H13 H 0 1 N N N 54.081 119.369 113.190 6.873  2.528  1.317  H13 5D6 51 
5D6 H14 H14 H 0 1 N N N 56.293 120.075 113.356 4.945  1.018  1.399  H14 5D6 52 
5D6 H15 H15 H 0 1 N N N 60.730 117.364 113.353 0.836  -0.233 0.260  H15 5D6 53 
5D6 H16 H16 H 0 1 N N N 63.389 118.229 112.618 0.141  -2.891 1.251  H16 5D6 54 
5D6 H17 H17 H 0 1 N N N 64.131 116.382 114.030 -1.501 -3.280 -0.612 H17 5D6 55 
5D6 H18 H18 H 0 1 N N N 62.964 114.740 112.871 0.213  -3.877 -2.166 H18 5D6 56 
5D6 H19 H19 H 0 1 N N N 61.225 116.348 114.842 -0.021 -0.925 -1.865 H19 5D6 57 
5D6 H20 H20 H 0 1 N N N 61.756 114.313 115.835 -0.708 -2.603 -3.401 H20 5D6 58 
5D6 H21 H21 H 0 1 N N N 62.080 116.483 117.071 -2.127 0.248  -1.795 H21 5D6 59 
5D6 H22 H22 H 0 1 N N N 64.383 118.623 114.685 -2.169 -1.970 1.309  H22 5D6 60 
5D6 H24 H24 H 0 1 N N N 61.780 121.801 114.930 -2.873 -0.674 3.253  H24 5D6 61 
5D6 H25 H25 H 0 1 N N N 61.179 120.331 114.092 -1.683 0.347  4.095  H25 5D6 62 
5D6 H26 H26 H 0 1 N N N 61.385 120.326 115.876 -2.274 0.815  2.483  H26 5D6 63 
5D6 H27 H27 H 0 1 N N N 63.850 122.019 115.634 0.393  -2.375 2.927  H27 5D6 64 
5D6 H28 H28 H 0 1 N N N 63.850 120.587 116.718 -0.171 -1.461 4.347  H28 5D6 65 
5D6 H29 H29 H 0 1 N N N 65.082 120.731 115.419 -1.273 -2.588 3.519  H29 5D6 66 
5D6 H30 H30 H 0 1 N N N 62.068 118.710 116.530 -0.985 0.675  0.310  H30 5D6 67 
5D6 H31 H31 H 0 1 N N N 65.572 117.474 115.796 -4.589 -1.090 0.596  H31 5D6 68 
5D6 H32 H32 H 0 1 N N N 66.993 118.759 117.333 -5.527 1.138  1.054  H32 5D6 69 
5D6 H33 H33 H 0 1 N N N 67.809 114.916 116.623 -8.909 -0.232 0.690  H33 5D6 70 
5D6 H34 H34 H 0 1 N N N 66.239 117.512 119.833 -6.652 2.223  -1.568 H34 5D6 71 
5D6 H35 H35 H 0 1 N N N 68.378 117.205 120.696 -7.095 3.065  1.175  H35 5D6 72 
5D6 H36 H36 H 0 1 N N N 68.213 119.784 119.349 -4.792 3.507  0.481  H36 5D6 73 
5D6 H37 H37 H 0 1 N N N 66.427 119.944 119.466 -4.265 2.836  -1.081 H37 5D6 74 
5D6 H38 H38 H 0 1 N N N 67.500 120.358 121.480 -4.731 5.174  -1.228 H38 5D6 75 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5D6 C19 N2  SING N N 1  
5D6 C20 C10 SING N N 2  
5D6 O5  C9  DOUB N N 3  
5D6 C16 C17 DOUB Y N 4  
5D6 C16 C15 SING Y N 5  
5D6 C10 C9  SING N N 6  
5D6 C10 C11 DOUB N E 7  
5D6 C9  N1  SING N N 8  
5D6 C17 C12 SING Y N 9  
5D6 N2  C15 SING N N 10 
5D6 N2  C18 SING N N 11 
5D6 C15 C14 DOUB Y N 12 
5D6 O6  C21 SING N N 13 
5D6 C12 C11 SING N N 14 
5D6 C12 C13 DOUB Y N 15 
5D6 C14 C13 SING Y N 16 
5D6 N1  C8  SING N N 17 
5D6 C8  C21 SING N N 18 
5D6 C8  C5  SING N N 19 
5D6 C21 C22 SING N N 20 
5D6 C5  N   SING N N 21 
5D6 C5  C4  SING N N 22 
5D6 N   C7  SING N N 23 
5D6 N   C6  SING N N 24 
5D6 C22 O7  SING N N 25 
5D6 C22 C3  SING N N 26 
5D6 C4  C3  SING N N 27 
5D6 C4  O4  SING N N 28 
5D6 C3  O3  SING N N 29 
5D6 O3  C2  SING N N 30 
5D6 C2  O4  SING N N 31 
5D6 C2  O2  SING N N 32 
5D6 O1  C   DOUB N N 33 
5D6 O   C   SING N N 34 
5D6 C   C1  SING N N 35 
5D6 C1  O2  SING N N 36 
5D6 C1  C23 SING N N 37 
5D6 C23 O8  SING N N 38 
5D6 C23 C24 SING N N 39 
5D6 C24 O9  SING N N 40 
5D6 C20 H1  SING N N 41 
5D6 C20 H2  SING N N 42 
5D6 C20 H3  SING N N 43 
5D6 C11 H4  SING N N 44 
5D6 C17 H5  SING N N 45 
5D6 C16 H6  SING N N 46 
5D6 C19 H7  SING N N 47 
5D6 C19 H8  SING N N 48 
5D6 C19 H9  SING N N 49 
5D6 C18 H10 SING N N 50 
5D6 C18 H11 SING N N 51 
5D6 C18 H12 SING N N 52 
5D6 C14 H13 SING N N 53 
5D6 C13 H14 SING N N 54 
5D6 N1  H15 SING N N 55 
5D6 C8  H16 SING N N 56 
5D6 C21 H17 SING N N 57 
5D6 O6  H18 SING N N 58 
5D6 C22 H19 SING N N 59 
5D6 O7  H20 SING N N 60 
5D6 C3  H21 SING N N 61 
5D6 C5  H22 SING N N 62 
5D6 C7  H24 SING N N 63 
5D6 C7  H25 SING N N 64 
5D6 C7  H26 SING N N 65 
5D6 C6  H27 SING N N 66 
5D6 C6  H28 SING N N 67 
5D6 C6  H29 SING N N 68 
5D6 C4  H30 SING N N 69 
5D6 C2  H31 SING N N 70 
5D6 C1  H32 SING N N 71 
5D6 O   H33 SING N N 72 
5D6 C23 H34 SING N N 73 
5D6 O8  H35 SING N N 74 
5D6 C24 H36 SING N N 75 
5D6 C24 H37 SING N N 76 
5D6 O9  H38 SING N N 77 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5D6 SMILES           ACDLabs              12.01 "O1C(OC3C1C(C(C(NC(=O)C(=[C@H]c2ccc(cc2)N(C)C)C)C3N(C)C)O)O)OC(C(O)CO)C(=O)O" 
5D6 InChI            InChI                1.03  
"InChI=1S/C25H37N3O10/c1-12(10-13-6-8-14(9-7-13)27(2)3)23(33)26-16-17(28(4)5)21-22(19(32)18(16)31)38-25(37-21)36-20(24(34)35)15(30)11-29/h6-10,15-22,25,29-32H,11H2,1-5H3,(H,26,33)(H,34,35)/b12-10+/t15-,16-,17+,18-,19+,20-,21-,22+,25+/m0/s1" 
5D6 InChIKey         InChI                1.03  LPVLOXICDYAAJH-LWTHLLSHSA-N 
5D6 SMILES_CANONICAL CACTVS               3.385 "CN(C)[C@@H]1[C@H](NC(=O)\C(C)=C\c2ccc(cc2)N(C)C)[C@H](O)[C@@H](O)[C@H]3O[C@@H](O[C@@H]13)O[C@@H]([C@@H](O)CO)C(O)=O" 
5D6 SMILES           CACTVS               3.385 "CN(C)[CH]1[CH](NC(=O)C(C)=Cc2ccc(cc2)N(C)C)[CH](O)[CH](O)[CH]3O[CH](O[CH]13)O[CH]([CH](O)CO)C(O)=O" 
5D6 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C/C(=C\c1ccc(cc1)N(C)C)/C(=O)N[C@H]2[C@H]([C@H]3[C@@H]([C@@H]([C@H]2O)O)O[C@@H](O3)O[C@@H]([C@H](CO)O)C(=O)O)N(C)C" 
5D6 SMILES           "OpenEye OEToolkits" 1.9.2 "CC(=Cc1ccc(cc1)N(C)C)C(=O)NC2C(C3C(C(C2O)O)OC(O3)OC(C(CO)O)C(=O)O)N(C)C" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5D6 "SYSTEMATIC NAME" ACDLabs              12.01 "(2S,3S)-2-{[(2R,3aS,4R,5S,6S,7R,7aR)-4-(dimethylamino)-5-({(2E)-3-[4-(dimethylamino)phenyl]-2-methylprop-2-enoyl}amino)-6,7-dihydroxyhexahydro-1,3-benzodioxol-2-yl]oxy}-3,4-dihydroxybutanoic acid" 
5D6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 
"(2S,3S)-2-[[(2R,3aS,4R,5S,6S,7R,7aR)-4-(dimethylamino)-5-[[(E)-3-[4-(dimethylamino)phenyl]-2-methyl-prop-2-enoyl]amino]-6,7-bis(oxidanyl)-3a,4,5,6,7,7a-hexahydro-1,3-benzodioxol-2-yl]oxy]-3,4-bis(oxidanyl)butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5D6 "Create component" 2015-09-08 EBI  
5D6 "Initial release"  2016-10-05 RCSB 
# 
