data_5A6
# 
_chem_comp.id                                    5A6 
_chem_comp.name                                  "(2S)-2-amino-4-[5-(5-aminopentyl)-1,3,4-oxadiazol-2-yl]butanoic acid" 
_chem_comp.type                                  "peptide linking" 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H20 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-08-28 
_chem_comp.pdbx_modified_date                    2016-02-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        256.301 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5A6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5DG6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5A6 O   O1  O 0 1 N N N -4.305 3.700 6.386 -5.920 -1.214 -1.172 O   5A6 1  
5A6 C   C1  C 0 1 N N N -4.210 4.611 7.199 -5.604 -0.315 -0.428 C02 5A6 2  
5A6 N18 N1  N 0 1 N N N -1.312 3.264 1.561 8.213  -1.082 0.483  N18 5A6 3  
5A6 C19 C2  C 0 1 N N N -0.340 4.143 2.162 7.174  -0.706 -0.484 C19 5A6 4  
5A6 C20 C3  C 0 1 N N N 1.066  3.590 1.926 5.858  -0.452 0.254  C20 5A6 5  
5A6 C21 C4  C 0 1 N N N 1.834  3.398 3.224 4.775  -0.060 -0.753 C21 5A6 6  
5A6 C22 C5  C 0 1 N N N 2.623  4.662 3.509 3.460  0.195  -0.015 C22 5A6 7  
5A6 C23 C6  C 0 1 N N N 3.189  4.593 4.905 2.377  0.587  -1.023 C23 5A6 8  
5A6 CA  C7  C 0 1 N N S -3.057 4.652 8.158 -4.510 -0.526 0.586  C28 5A6 9  
5A6 C29 C8  C 0 1 N N N -1.829 5.184 7.438 -3.206 0.082  0.065  C29 5A6 10 
5A6 C30 C9  C 0 1 N N N -0.563 5.041 8.262 -2.127 -0.021 1.144  C30 5A6 11 
5A6 C31 C10 C 0 1 Y N N 0.554  5.380 7.318 -0.844 0.578  0.630  C31 5A6 12 
5A6 N32 N2  N 0 1 Y N N 0.977  6.625 7.028 -0.473 1.821  0.744  N32 5A6 13 
5A6 N33 N3  N 0 1 Y N N 2.014  6.505 6.100 0.678  1.977  0.191  N33 5A6 14 
5A6 C34 C11 C 0 1 Y N N 2.186  5.190 5.851 1.081  0.837  -0.295 C34 5A6 15 
5A6 O35 O2  O 0 1 Y N N 1.289  4.483 6.592 0.132  -0.074 -0.024 O35 5A6 16 
5A6 N   N4  N 0 1 N N N -2.838 3.331 8.700 -4.323 -1.966 0.812  N36 5A6 17 
5A6 H2  H2  H 0 1 N N N -2.231 3.627 1.716 9.092  -1.256 0.020  H2  5A6 18 
5A6 H3  H3  H 0 1 N N N -1.140 3.200 0.578 8.314  -0.378 1.198  H3  5A6 19 
5A6 H5  H5  H 0 1 N N N -0.421 5.142 1.710 7.477  0.200  -1.010 H5  5A6 20 
5A6 H6  H6  H 0 1 N N N -0.529 4.213 3.243 7.036  -1.514 -1.203 H6  5A6 21 
5A6 H7  H7  H 0 1 N N N 0.984  2.619 1.416 5.555  -1.357 0.779  H7  5A6 22 
5A6 H8  H8  H 0 1 N N N 1.620  4.293 1.287 5.995  0.356  0.973  H8  5A6 23 
5A6 H9  H9  H 0 1 N N N 1.130  3.207 4.047 5.078  0.846  -1.279 H9  5A6 24 
5A6 H10 H10 H 0 1 N N N 2.522  2.546 3.125 4.638  -0.868 -1.472 H10 5A6 25 
5A6 H11 H11 H 0 1 N N N 3.445  4.753 2.784 3.157  -0.711 0.510  H11 5A6 26 
5A6 H12 H12 H 0 1 N N N 1.960  5.536 3.424 3.597  1.003  0.704  H12 5A6 27 
5A6 H13 H13 H 0 1 N N N 3.379  3.544 5.178 2.680  1.492  -1.548 H13 5A6 28 
5A6 H14 H14 H 0 1 N N N 4.130  5.161 4.953 2.240  -0.221 -1.741 H14 5A6 29 
5A6 H15 H15 H 0 1 N N N -3.306 5.344 8.976 -4.786 -0.044 1.524  H15 5A6 30 
5A6 H16 H16 H 0 1 N N N -1.703 4.627 6.498 -2.883 -0.459 -0.825 H16 5A6 31 
5A6 H17 H17 H 0 1 N N N -1.986 6.250 7.214 -3.370 1.130  -0.187 H17 5A6 32 
5A6 H18 H18 H 0 1 N N N -0.457 4.011 8.633 -2.450 0.520  2.034  H18 5A6 33 
5A6 H19 H19 H 0 1 N N N -0.575 5.738 9.113 -1.964 -1.069 1.396  H19 5A6 34 
5A6 H20 H20 H 0 1 N N N -2.070 3.356 9.340 -5.149 -2.379 1.218  H20 5A6 35 
5A6 H21 H21 H 0 1 N N N -3.661 3.027 9.179 -4.066 -2.436 -0.043 H21 5A6 36 
5A6 OXT OXT O 0 1 N N N -5.076 5.606 7.274 -6.224 0.873  -0.509 OXT 5A6 37 
5A6 H1  H1  H 0 1 N N N -5.750 5.490 6.615 -6.917 0.961  -1.178 H1  5A6 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5A6 N18 C19 SING N N 1  
5A6 C20 C19 SING N N 2  
5A6 C20 C21 SING N N 3  
5A6 C21 C22 SING N N 4  
5A6 C22 C23 SING N N 5  
5A6 C23 C34 SING N N 6  
5A6 C34 N33 DOUB Y N 7  
5A6 C34 O35 SING Y N 8  
5A6 N33 N32 SING Y N 9  
5A6 O   C   DOUB N N 10 
5A6 O35 C31 SING Y N 11 
5A6 N32 C31 DOUB Y N 12 
5A6 C   CA  SING N N 13 
5A6 C31 C30 SING N N 14 
5A6 C29 CA  SING N N 15 
5A6 C29 C30 SING N N 16 
5A6 CA  N   SING N N 17 
5A6 N18 H2  SING N N 18 
5A6 N18 H3  SING N N 19 
5A6 C19 H5  SING N N 20 
5A6 C19 H6  SING N N 21 
5A6 C20 H7  SING N N 22 
5A6 C20 H8  SING N N 23 
5A6 C21 H9  SING N N 24 
5A6 C21 H10 SING N N 25 
5A6 C22 H11 SING N N 26 
5A6 C22 H12 SING N N 27 
5A6 C23 H13 SING N N 28 
5A6 C23 H14 SING N N 29 
5A6 CA  H15 SING N N 30 
5A6 C29 H16 SING N N 31 
5A6 C29 H17 SING N N 32 
5A6 C30 H18 SING N N 33 
5A6 C30 H19 SING N N 34 
5A6 N   H20 SING N N 35 
5A6 N   H21 SING N N 36 
5A6 C   OXT SING N N 37 
5A6 OXT H1  SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5A6 SMILES           ACDLabs              12.01 "O=C(C(N)CCc1nnc(CCCCCN)o1)O"                                                                             
5A6 InChI            InChI                1.03  "InChI=1S/C11H20N4O3/c12-7-3-1-2-4-9-14-15-10(18-9)6-5-8(13)11(16)17/h8H,1-7,12-13H2,(H,16,17)/t8-/m0/s1" 
5A6 InChIKey         InChI                1.03  XXNJPPZYKMFZTO-QMMMGPOBSA-N                                                                               
5A6 SMILES_CANONICAL CACTVS               3.385 "NCCCCCc1oc(CC[C@H](N)C(O)=O)nn1"                                                                         
5A6 SMILES           CACTVS               3.385 "NCCCCCc1oc(CC[CH](N)C(O)=O)nn1"                                                                          
5A6 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C(CCc1nnc(o1)CC[C@@H](C(=O)O)N)CCN"                                                                      
5A6 SMILES           "OpenEye OEToolkits" 1.9.2 "C(CCc1nnc(o1)CCC(C(=O)O)N)CCN"                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5A6 "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-2-amino-4-[5-(5-aminopentyl)-1,3,4-oxadiazol-2-yl]butanoic acid"   
5A6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-2-azanyl-4-[5-(5-azanylpentyl)-1,3,4-oxadiazol-2-yl]butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5A6 "Create component" 2015-08-28 RCSB 
5A6 "Initial release"  2016-02-10 RCSB 
# 
